mRNA_Ecto-sp6_S_contig94.18514.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18514.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 1007 bits (2603), Expect = 0.000e+0 Identity = 555/605 (91.74%), Postives = 572/605 (94.55%), Query Frame = 1
Query: 1 MSITPEDTSPAAHVHASLHSLTAGSAIARSQDELMDAIGAVPPDVVVVRNILSSMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEDKEYMVNAKTNGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTAPPQERLPSAGSGREGSTPTEPPPTAGERLATVTEGGGPVEGQASDDVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRPQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTSMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDETGNGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRARRTAAMYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDDDIASQRNFPSKPPPYRSFVNTNPRTTGTHTMDANQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDAGVV 1815
MSITPEDTSPAAHV ASLHSL AGS IARSQDELMDAI VPPD+V VRNILS+MREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGE KE MVNA+ GMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVI+AT XXXXXXXXXXXXXXXXXXXXXXXXXX QTAPP+ERLPSAG+GR GST TEPPPTAGE LATVTEGGGP EG AS++VPFVLDPRLPVIQA LEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGR QIFE +FNAFRRD+HDEKIDLLLDPGVETSHAQTSLRRA NSQEGT MAQLV+EKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDE+G+GPLYLLLVLCFIAPFWSWG AMSVKRDPE TNTRAR+TAA YFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLM KGK TRA +RSNQLYGQDDDIASQRNF SKPPPYRSFVNT+PRTTGTHTMDA+QTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDAGVV
Sbjct: 1 MSITPEDTSPAAHVRASLHSLAAGSEIARSQDELMDAIAVVPPDLVAVRNILSTMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEVKENMVNARMKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATDXXXXXXXXXXXXXXXXXXXXXXXXXXDPLQTAPPKERLPSAGAGRGGSTQTEPPPTAGESLATVTEGGGPAEGLASEEVPFVLDPRLPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMSRTKGKITRATDRSNQLYGQDDDIASQRNFHSKPPPYRSFVNTDPRTTGTHTMDADQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDAGVV 605
BLAST of mRNA_Ecto-sp6_S_contig94.18514.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 823 bits (2126), Expect = 5.930e-297 Identity = 437/487 (89.73%), Postives = 444/487 (91.17%), Query Frame = 1
Query: 355 MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTAPPQERLPSAGSGREGSTPTEPPPTAGERLATVTEGGGPVEGQASDDVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRPQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTSMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDETGNGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRARRTAAMYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDDDIASQRNFPSKPPPYRSFVNTNPRTTGTHTMDANQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDAGVV 1815
MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFR+VI+AT XXXXX TAPPQERLPSAG+GREGSTPTEPP TAGERLATVTEGGGPVEGQ S+DVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGR QIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGT MAQLVREKTTSLKSDV+KRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDE+G+GPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRA PAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDDDI SQRNFPSKPPPYRSFVNTNPRT GTHTMDANQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDAGVV
Sbjct: 1 MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFRDVIRATDAHGMTILHHAVNGNGNEQATTRSSXXXXXXTAPPQERLPSAGAGREGSTPTEPPSTAGERLATVTEGGGPVEGQESEDVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRAS----------PAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDDDIVSQRNFPSKPPPYRSFVNTNPRTAGTHTMDANQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGDAGVV 477
BLAST of mRNA_Ecto-sp6_S_contig94.18514.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 167 bits (423), Expect = 4.470e-41 Identity = 144/495 (29.09%), Postives = 211/495 (42.63%), Query Frame = 1
Query: 187 VLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFM-----EGEDKEYMVNAKTNGMQK---------------------------QLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPS-----QFREVIKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTAPPQERLPSAGSGREGSTPTEPPPTAGERLATVTEGGGP---------VEGQASDDVPFVLDPRL------------------PVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRPQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTSMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDETGNGPLYLLLVLCFIAPFWSWGAAMSVK-RDPETTNTRARRTAAMYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARA 1476
VL PS +HK+RTPLMAAAATG + L A + E E + + N GM L++ D + MTLLMHA S + +FQ + ++ + RE++ PP + P + ++G P E + G T GGG V G A+ D ++ + PV + A+ LW E + L+A D W RS++ HA++SG +FEA + A R + DE + +++ E T + A+ ++ T M +L + LK DV R ST+ AKI+ FIPG L+V+FQLLLP+ E L LL ++C +AP SV D + T +AR L PAMFFWGVGTS + + W+ S SA ++A AT+ IPA+D++F+ R A A
Sbjct: 91 VLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGDEDLREMM-------VERDSDGLNLLMHAASCCAPASALVPAETPPVD--PDSSHKKDGG-PAESSRSKGTASKTALTGGGTSPADASSGAVAGDAAKDKKTAVEKTVEADTKEEKGVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETN-EGEREDTPMIDAL-ARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQ--LILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASA 571
BLAST of mRNA_Ecto-sp6_S_contig94.18514.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.170e-38 Identity = 100/252 (39.68%), Postives = 148/252 (58.73%), Query Frame = 1
Query: 712 EGQASDDVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRPQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTSMAQLVREKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDETGNGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRARRTAAMYFLAIPAMFFWGVGTSKIA-PNSFNWAESASAAALAVATIVIPALDTYFSGR 1464
EG D+ +VLDP + V+++AL E R+ L+A D W R+I HA+++ RP++F+AVF A R + D++I L+ G+ ++ +MA V + LK ++ + ST+ +KIQ+FIPG LIVIFQLLLPE + L LL+++ IAP SW A + + P +T R R+ FL+ PAMFFWG+GTS + + W +SA+AAALAVATI+IPA+D +F+ R
Sbjct: 356 EGAPRDE--WVLDPGMAVLKSALALVE------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALM--GINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSDK--LTLLIIMSAIAPGLSWAAGLVAREKPGSTEKR--RSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSR 593
BLAST of mRNA_Ecto-sp6_S_contig94.18514.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 3.910e-5 Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 82 ARSQDELMDAIGAVPP-DVVVVRNILSSMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEDKEYMVNAKTNGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQ 462
AR + +GAV D +R LS + VL PS S H++RTPLMAAAATG + + VL A GE + M + + +KQL+ VD GMTLLM A + S + +A+ + V+
Sbjct: 20 AREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLA-PSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAI--GEQR--METNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVR 142 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18514.1 >prot_Ecto-sp6_S_contig94.18514.1 ID=prot_Ecto-sp6_S_contig94.18514.1|Name=mRNA_Ecto-sp6_S_contig94.18514.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=606bp MSITPEDTSPAAHVHASLHSLTAGSAIARSQDELMDAIGAVPPDVVVVRNback to top mRNA from alignment at Ecto-sp6_S_contig94:176180..186907- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18514.1 ID=mRNA_Ecto-sp6_S_contig94.18514.1|Name=mRNA_Ecto-sp6_S_contig94.18514.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10728bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:176180..186907- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:176180..186907- >mRNA_Ecto-sp6_S_contig94.18514.1 ID=mRNA_Ecto-sp6_S_contig94.18514.1|Name=mRNA_Ecto-sp6_S_contig94.18514.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1818bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:176180..186907- (Ectocarpus species6 EcLAC_371)back to top |