mRNA_Ecto-sp6_S_contig93.18507.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 752 bits (1941), Expect = 3.060e-270 Identity = 401/494 (81.17%), Postives = 415/494 (84.01%), Query Frame = 1
Query: 1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFPFPPNRMSTSAPSFNVQRGVPLLRLVTLRLYPSASAPWPRTSSHLFTSKGATP*LSSRLWLCSQLG---------------FIVQSTRRRTTEGRSQAS--SHRMGGTNDTSSDHEMDDSSERA 1431
MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISR+GGGAGERC+KLFIGKQPGTTAGVEGAFTPDGVMYANVFQI AESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANF P + P N G L R SA+A TSS SK ++L Q G ++ ++ + +G + GGTNDTSSDHEMDDS + A
Sbjct: 1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLP------AQPHVNF--GALLQRSAR-----SATAEVGDTSS---LSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSHQSA 478
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE) HSP 1 Score: 290 bits (743), Expect = 3.610e-91 Identity = 157/275 (57.09%), Postives = 191/275 (69.45%), Query Frame = 1
Query: 43 DLARFVPLVPPVTCPL----------AGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAG-VEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 834
D +P+ P +T P+ SRSI DHNF +K+ Y+AFEAL Q P+ F S+ GR+ EI IDGCAKI TD+ QF IAR ER VD D +++LK+S+ISKM F R+R+VLEAAP FG NR+SN+M+RTARG+MA GSP+ GD GEL++ALGD AITDLS K +DL+NIY LCF KGIS + K+ LVQC Q+LW S G GERC+KLFIGK G+TAG VEG FT D VM A+VFQITAES ADAVD+ H LV
Sbjct: 31 DAQNLLPVYPSLTLPIDSLLPRLPRVPSSRSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADLHNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLV 304
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE) HSP 1 Score: 258 bits (660), Expect = 2.280e-79 Identity = 140/241 (58.09%), Postives = 163/241 (67.63%), Query Frame = 1
Query: 103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAH 825
SI DH F +KE Y+AFEAL QHP+ F S+ GR+PEI IDGCAKI TD+ QF IAR ER VD + +++LK+SMISKMVF +R+VLEAAP FG GSP+ GD GEL++ALGD AITDLS KSF DLKNIY LCF KGIS + K+ L QC Q+LW +G GERC KLFIGK G+TAGVEG FT DGVM A+VFQITAES ADAVD+ H
Sbjct: 14 SIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFG----------------PTPVGSPEDGDAGELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELADG--EGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVH 236
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE) HSP 1 Score: 249 bits (636), Expect = 1.750e-76 Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 1
Query: 46 LARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGV 759
+A L P + PL SI DHNFI +++ Y+AFE LTQHP++F SY +G PE+++IDGCAK+ +D+ + F AR ER VD D HQLLK+SMISKMVF R+R+V EA PTFG NRISN+M RTARGK GS +TGD GEL++AL + DL+ K+ DLKNIY LCF G +GIS + K+ + CFQ+LW G +RC+K+FI + G TAGVEG FTPDGV
Sbjct: 1 MATTAVLSPAASVPL----SIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSAETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGV 234
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 204 bits (519), Expect = 8.910e-57 Identity = 128/279 (45.88%), Postives = 165/279 (59.14%), Query Frame = 1
Query: 340 MISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAG---------------RKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLA-PIAERLH-----PWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPS-SATDV----VVDNIYAVYA 1098
MISKMVF +R+R+V+EAAPT NRISN+M RTARGK+A G+P+ GD G+L++ALGD AITDLS+K+ DL+NIY LC+ R + RF + L+QC W S G G ERC+++FIGK G T GVEG F DGV+YA VFQ+ ESAAD VD+ +H T +P P+ + H P G LPR+A+ V L LQH+GA A+EFPD + V+ P FPSP + SA+D V +YA YA
Sbjct: 1 MISKMVFDRRLRWVVEAAPTVSPHNRISNVMHRTARGKLAPEGAPERGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESA-GIGDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISH-----RQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYA 273
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE) HSP 1 Score: 193 bits (491), Expect = 5.510e-56 Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 1
Query: 103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNI 567
SI DHNF +K+ Y+AFEAL QHP+ F S+ GR+PEI IDGCAKI TD+ QF AR ER VD D +++LK+SMISKMVF R+R+VLEAAP G NR+SN+M RTARG+MA GSP+ GD GEL++ALGD AITDLS KS +DLKNI
Sbjct: 14 SIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKSVSDLKNI 168
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE) HSP 1 Score: 181 bits (459), Expect = 6.600e-51 Identity = 91/167 (54.49%), Postives = 116/167 (69.46%), Query Frame = 1
Query: 334 ISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 834
+SMISKMVF R+R+V EA PTFG NRISN+M RTARGK GSP+TGD GEL++AL + DL+ K+ DLKNIY LCF G +GIS + K+ + CFQ+LW G +RC+K+FI + G TAGVEG FTPDGV+ +++ Q+T+ES AD VD H V
Sbjct: 1 MSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSPETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHLAV 167
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 188 bits (477), Expect = 3.690e-49 Identity = 117/341 (34.31%), Postives = 164/341 (48.09%), Query Frame = 1
Query: 97 SRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTE--SFPSPPPSSAT---DVVVDNIYAVYADA 1104
++ I DHNFI +++ Y+AFE LTQHP++F SY +G PE+++IDGCAK+ +D+ + F AR ER VD D HQLLK+SMISKM + + CFQ+LW G +RC+K+FI + G TAGVEG FTPDGV+ +++ Q+ + + PS+++TDIPCM+AP AE+ P LL+N G LPR+A G VSLP LQH+GA +++PD H V+ P +F S SS D + N+Y +A A
Sbjct: 4 AKLIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKM----------------------------------------------------------------------------------------EDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATA 256
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE) HSP 1 Score: 175 bits (443), Expect = 2.480e-48 Identity = 96/167 (57.49%), Postives = 113/167 (67.66%), Query Frame = 1
Query: 334 ISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 834
+SMI KM+F R+R+VLEAAPTFG NR+SN+M RTARG+MA GSP+ GD GEL++ALGD A+TDLS KS + LVQC Q+LW S G ERC+KLFIGK G+TAGVEG FT DGVM A+VFQITAES ADAVD+ H LV
Sbjct: 1 MSMIYKMIFNARLRWVLEAAPTFGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAVTDLSDKS------------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLV 143
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.110e-41 Identity = 81/124 (65.32%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 670 GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPS 1041
G GERC+KLF+GK GTTAGVEG FT DGV FQ+T ESAAD VD+ AH LV P L+ITDIPC + PIAERL P LL++ G LPRDA+G V L LQH+GAHA+EFPDEH VK P FP+
Sbjct: 5 GEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPT 128 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig93.18507.1 >prot_Ecto-sp6_S_contig93.18507.1 ID=prot_Ecto-sp6_S_contig93.18507.1|Name=mRNA_Ecto-sp6_S_contig93.18507.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=424bp MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYback to top mRNA from alignment at Ecto-sp6_S_contig93:699843..702316+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig93.18507.1 ID=mRNA_Ecto-sp6_S_contig93.18507.1|Name=mRNA_Ecto-sp6_S_contig93.18507.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2474bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:699843..702316+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:699843..702316+ >mRNA_Ecto-sp6_S_contig93.18507.1 ID=mRNA_Ecto-sp6_S_contig93.18507.1|Name=mRNA_Ecto-sp6_S_contig93.18507.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:699843..702316+ (Ectocarpus species6 EcLAC_371)back to top |