mRNA_Ecto-sp6_S_contig93.18503.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig93.18503.1
Unique NamemRNA_Ecto-sp6_S_contig93.18503.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: D7FIH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH2_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.100e-29
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK
Sbjct:    1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 57
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: H3HEF9_PHYRM (Uncharacterized protein n=18 Tax=Oomycota TaxID=4762 RepID=H3HEF9_PHYRM)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-17
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MAK KA  + IK+LS AGTGFFYT +KN R  T KL+LRKYDP+VRQHV+F E KIK
Sbjct:    1 MAKGKAKNVVIKMLSAAGTGFFYTTTKNPRNVTRKLSLRKYDPIVRQHVIFNEAKIK 57
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A836CCP4_9STRA (Ribosomal protein L33-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.530e-17
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETK 205
            MA KKA  IAIKLLSTAGTGFFYT  KN R  T KL+ RKYDP+VR+HV+FTETK
Sbjct:    1 MAGKKATAIAIKLLSTAGTGFFYTTKKNPRTITRKLSFRKYDPIVRRHVMFTETK 55
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A7S1ZHZ1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHZ1_TRICV)

HSP 1 Score: 83.2 bits (204), Expect = 1.510e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MA+ K   IAIKLLSTAGTGFFYT  KN+ K  +K+ALRK+DPVVR+HV+FTE KIK
Sbjct:   51 MARGKGRTIAIKLLSTAGTGFFYTTRKNITKTPHKVALRKFDPVVRRHVMFTEQKIK 107
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A833W4D1_PHYIN (Ribosomal protein L33 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A833W4D1_PHYIN)

HSP 1 Score: 82.0 bits (201), Expect = 2.330e-16
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:   53 KAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            KA  + IK+LS AGTGFFYT +KN R  T KL+LRKYDP+VRQHV+F ETKIK
Sbjct:   32 KAKNVVIKMLSAAGTGFFYTTTKNPRNVTRKLSLRKYDPIVRQHVIFNETKIK 84
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: F0WEM4_9STRA (Uncharacterized protein AlNc14C179G8192 n=2 Tax=Albugo TaxID=65356 RepID=F0WEM4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.350e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MAK KA  I IK++S+A TGFFYT +KN R    KL+LRKYDP+VRQHV+F ETK+K
Sbjct:    1 MAKGKAKNIIIKMISSANTGFFYTTTKNPRNVQRKLSLRKYDPIVRQHVIFNETKMK 57
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A8J5Y2T4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y2T4_DIALT)

HSP 1 Score: 81.3 bits (199), Expect = 5.640e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MAKKK  R+ +KL+S AGTGFFYT +KN +   +KL L KYDP+VRQHV+FTE KIK
Sbjct:    1 MAKKKLARLVVKLVSDAGTGFFYTTTKNQKNTPDKLVLSKYDPIVRQHVLFTEGKIK 57
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BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A067CF23_SAPPC (50S ribosomal protein L33 n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CF23_SAPPC)

HSP 1 Score: 79.7 bits (195), Expect = 8.480e-16
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MAK KA  + IKLLS A TGFFYT  KN R    KLALRKYDPVVRQHV+F E KIK
Sbjct:    1 MAKGKAKSVIIKLLSAANTGFFYTTRKNPRNMQKKLALRKYDPVVRQHVLFNEAKIK 57
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A8J5J0H2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5J0H2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.720e-16
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:   53 KAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            KA  + IK+LS AGTGFFYT +KN R  T KL+LRKYDP+VRQHV+F E KIK
Sbjct:   19 KAKNVVIKMLSAAGTGFFYTTTKNPRNVTRKLSLRKYDPIVRQHVIFNEAKIK 71
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Match: A0A6N2E0Y6_9PROT (50S ribosomal protein L33 n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6N2E0Y6_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 1.570e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:   41 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 211
            MAK K   I I+L+S+AGTG+FY A KN R ATNKL  RKYDPVVR+HV F E KIK
Sbjct:    1 MAKAKQNTILIRLVSSAGTGYFYVAKKNPRTATNKLEFRKYDPVVRKHVAFKEAKIK 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH2_ECTSI9.100e-29100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3HEF9_PHYRM1.100e-1768.42Uncharacterized protein n=18 Tax=Oomycota TaxID=47... [more]
A0A836CCP4_9STRA1.530e-1774.55Ribosomal protein L33-domain-containing protein n=... [more]
A0A7S1ZHZ1_TRICV1.510e-1670.18Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A833W4D1_PHYIN2.330e-1669.81Ribosomal protein L33 n=3 Tax=Phytophthora TaxID=4... [more]
F0WEM4_9STRA4.350e-1664.91Uncharacterized protein AlNc14C179G8192 n=2 Tax=Al... [more]
A0A8J5Y2T4_DIALT5.640e-1664.91Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A067CF23_SAPPC8.480e-1670.1850S ribosomal protein L33 n=8 Tax=Saprolegniaceae ... [more]
A0A8J5J0H2_9STRA8.720e-1667.92Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6N2E0Y6_9PROT1.570e-1566.6750S ribosomal protein L33 n=1 Tax=Rhodospirillales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:647571..650160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score113.2
Seed ortholog evalue4e-23
Seed eggNOG ortholog2880.D7FIH2
Preferred nameMRPL33
Model size850
KEGG koko:K02913
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons3
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0267@1,KOG3505@2759
Ec32 ortholog descriptionRibosomal protein L33
Ec32 orthologEc-28_000260.1
Cds size174
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350572.9375596-UTR-Ecto-sp6_S_contig93:647570..6476101682350572.9375596-UTR-Ecto-sp6_S_contig93:647570..647610Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig93 647571..647610 +
1682350572.9720502-UTR-Ecto-sp6_S_contig93:649524..6501601682350572.9720502-UTR-Ecto-sp6_S_contig93:649524..650160Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig93 649525..650160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350572.9476552-CDS-Ecto-sp6_S_contig93:647610..6476191682350572.9476552-CDS-Ecto-sp6_S_contig93:647610..647619Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 647611..647619 +
1682350572.9562194-CDS-Ecto-sp6_S_contig93:648435..6485461682350572.9562194-CDS-Ecto-sp6_S_contig93:648435..648546Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 648436..648546 +
1682350572.9642086-CDS-Ecto-sp6_S_contig93:649470..6495241682350572.9642086-CDS-Ecto-sp6_S_contig93:649470..649524Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 649471..649524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18503.1prot_Ecto-sp6_S_contig93.18503.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig93 647611..649524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig93.18503.1

>prot_Ecto-sp6_S_contig93.18503.1 ID=prot_Ecto-sp6_S_contig93.18503.1|Name=mRNA_Ecto-sp6_S_contig93.18503.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=58bp
MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVV
FTETKIK*
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mRNA from alignment at Ecto-sp6_S_contig93:647571..650160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig93.18503.1 ID=mRNA_Ecto-sp6_S_contig93.18503.1|Name=mRNA_Ecto-sp6_S_contig93.18503.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2590bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:647571..650160+ (Ectocarpus species6 EcLAC_371)
GTGGGCTTGCCTCACTGGGTGTACATTACGTTAAACCATCATGGCGAAGG
TGAGGGTTGGGTGTCCACACAAGATGTATTCCTGTGACTTCTTGTGTTGC
TGTGCACGAGCTTGCGGAAGATCTCGCTCTCTGATGTACTTCAGGTTCCT
TTTCCTGCCCGCACGCAATCGCAGCCGCCCGTGCAAAGCTGACAGTCCCG
CCGACAATCATCAGGCCAGCAGATCTGAGGGCGACAGAGAGGGAGTGCGC
GTTGCTGCTGTTGCTCTAAGCATCCAGCAGGCGTGTCGTAATACAGAATG
TTCAAATCTTGCGCGCATGTTCTCGGCAGTCGGCCCCGCTGCCCTTGCCC
CTTGCCGCTTAGTCCAAGGTTCCTTCGTAATAGGGGACCGCCATTTGCAC
ACCTCTGTTACGGAAACCGTAGACACAGGTACTTTCTGACGCTATGAATT
CATTGCTAATCTGTCTCAGACTCTTTTCTACGATAAAGATGGATTCGTTG
TTTCATATTAAGAAAATAAACAAAAAAAGCTATGATCGCTTGTCGATTTG
CAAAGCACCGCAGAGGAGTTGTTTTGTGTAACCCCAGATCGGAGCGCTTC
GATTAGGGAAGCAAGATCGTAGGTTTTTTAAATACTGTGGTCATCGGGAA
AAGTTGGCTGTCTCCTGTTGGGATACATCGTGTGCGTGTTCTGCAGTTAC
AACATCATCCCGTGTACCTCAAGCTCGAGCGGGATCAGTTCTAACCTTGT
TGATGGTGTGCGTATGCAGGGCCACCCCTAGTTTAACGAAGCAGTCTTGC
CTGTTGAGTTTACTACTGACGGCCGCTGCTGCCTCTGTGTCTGTGTTTAT
TCTCCGTCTAAACAGAAGAAGGCTGGGCGTATCGCCATCAAACTGCTGAG
CACGGCAGGGACCGGCTTCTTCTATACCGCCTCGAAAAACGTGCGAAAGG
CCACCAACAAGCTGGCCCTGCGAAAGGTATGCAATACAAGTACAGGCCTT
GGAAGGGAATTCTCGTTCAAAGCCCTTTGTGCTGAGGTATCCGAAGGGTT
GGACAGGGAAAAGACAAGTATTTTAGCAAGCCGGTGCTGGGCTAGATATT
TTTTTTGGGTGTGTTTGAGATCATCTCCATTACCTCATCAGTCCTTGGTT
CTCCCCCTTCTCGATGTCCCAGCCTGCGATACGGCTGCTACTTCGTACTA
TATTATTCGTTTGGGGTTTTCGCTTCTACCCAAGCTAAAGCGCACATGAC
ATGTTGGTGATGGGAAAGAGACTGACACTGTACTACTCCGTCCGCCTCTG
GCTGGTGTGCTGCCCTCCTCAACGCGGTAGCTGTACGATCTCTGGCTTGC
CCCGGCGGTTTGACTATGTAGTGGAAATAACGCATCCGATAACATCCGCC
GTTGTGATGGCATACATAGCTCGCCTGCCTCCGATCTTGAAGAGACGTTT
ACCCATGCCATTCGCACGCGTTCGCCCAACCTCATGACCGGTCTCTTTCG
ATAGAAATCCTGAAGCATGTTCATGTGCCTACAGTTTTGGTCAGCTGTGG
CTCCCATGCTAGTTTCACGATGGTCGAATGCGTGGCCCTTGTTACCCCGC
TGAAATACTAGCTCCTTCAGCGATAAACAGCGGCGCGAATGCGACAACAT
TAGACATGTGACCTTCAGCAACACAGGATGGCGCGCGTGGCTGGCGAAAG
TGCGCGCGGCGCAACTGTTTTTGGCACTGCTGTATTTTCGAATTCTCACC
CGTCAAGTGTCAATGAAGGCCGCCTGCAGGTGGCCTTCACGCTATTCGCG
CACGAGACACGCCTCGACCGCTTCCCCCTCCCGTTGTCCGCTTGCCTGTT
CCCGCCTTGCCGGCGAACGGCGTGTTCGCGCGTGTGTCGAATTCTTGCAG
TACGACCCTGTAGTACGACAACATGTCGTCTTCACCGAAACGAAGATCAA
GTGAGCCGCCCCGGCCCGTCCGAGCATTTCGCGCGAGGCCAACCCGTTCT
TCTCCACATGAAGCGGCATCAAATCGAGAACTACGACGGAGGGAGGTCAC
CTCTCACCAAGCCGTGATACGTCGGTTTGTCATCGATGGCATCGCGGTCG
TCTAGCATCGGCTTTTTTTGCGCTTCGACCTGGCGTTTCATAGACTGAAG
TCGACGCGGTGCGCATGTATGTAAGGTATCGGGCGCAAAACGCTTTTTTT
TTTCCTTGGTGGTTCAGGTTGGGACGGTGTGCTCACACGTTGTGCTGTTG
GTAGGAACTGGCGATGTGGCAGGCTGACATGCAGAGATATCAAGGTAGAC
AAGTCTGATGTACCGGCGTTACGGGGCAGAGTAGCAAGTGGTGGCCGAGC
AATCACGACTCTCTCGTGAGAAGTCATTATCGGTAGGTTGGCATTTTCCG
TACCACGTGAAGTTGTGCCTTGCCGTCGAATTGGAGATGGCGTCGTTCTG
CTGTTCGTGATATCCCGAGCGTGAATTGTCAGTGCTGAGAGGTGCATCGC
TTCGCTCGTTTCTAGTGTTCCCTGATGCTCAGTAGGCTCGATAGAGCCTG
TGTGGACCCAATCGGCTGTGCAAATGGTCTATTCCACGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:647571..650160+

>mRNA_Ecto-sp6_S_contig93.18503.1 ID=mRNA_Ecto-sp6_S_contig93.18503.1|Name=mRNA_Ecto-sp6_S_contig93.18503.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:647571..650160+ (Ectocarpus species6 EcLAC_371)
ATGGCGAAGAAGAAGGCTGGGCGTATCGCCATCAAACTGCTGAGCACGGC
AGGGACCGGCTTCTTCTATACCGCCTCGAAAAACGTGCGAAAGGCCACCA
ACAAGCTGGCCCTGCGAAAGTACGACCCTGTAGTACGACAACATGTCGTC
TTCACCGAAACGAAGATCAAGTGA
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