mRNA_Ecto-sp6_S_contig93.18497.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig93.18497.1
Unique NamemRNA_Ecto-sp6_S_contig93.18497.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18497.1 vs. uniprot
Match: A0A6H5L9A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9A3_9PHAE)

HSP 1 Score: 792 bits (2046), Expect = 1.520e-278
Identity = 441/577 (76.43%), Postives = 460/577 (79.72%), Query Frame = 1 
Query:    1 MKHLENTSRLSLTSLHNAARRGDSASLQRLIATIDPLAAEKIAAVLRDGDSRGACISSPRT-AAAPKNKVKGKGAGRTTSKLVHAQGKSGGKKKKTPSRLKRLLQKQDSKRRTALYVACASGNTEIADALLTVGASLDGHGAWQRTPXXXXXXXXXXSAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAAIMRREVSTGTEGLIGMTFVHDDGQVGTVVDAVERWAFTLEVELDGWKMVNGSGAKLYLPVSGERLNTRAPPSSAGAADTTNDDGTTSGSRLNPASLAEPILWLADTVQRMRLESEDLVRVTADSLVGARVSRRTPLGGGRVTAVRNVKIGCDLRTAALSARAGMTTVPATGRKRERCADVTFSDARSEEPELSDLEESLGMPMQEARSCRSCSTASSDHDVGLKVPEVGLAAGLGAVGHHGDRERYQGEDGSKATIICARPMGPENADHGHRQVGPSGECSTRRCLSARLVQVVSKRGVSRRHREQRASSEDSWAKDCDTDDESGAPDDWSVGTESAAEFDACVATTVNERTREGFGSQRAGIESRSTNRRRAPSE 1728
            MK LENTSRLSLTSLHNAARR DSASLQRLIATIDPLAA+KI AVL+DGDSRGACISSPRT AAAPKNK          ++ +  +       +K PSRLKRLLQ+QDSKRRT L+VACASGNTEIADALLTVGASLDGHGAWQRTP          SAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAAIMRREVSTGTEGLIG TFVHDDGQVGTVVDA ERW FTLEV+LDGWKM NGSG KLYLPVS                            R NP S AEPI  LADTVQRMRLESEDLV VTADSL+GARVSRRTPLGGGRVTAVRNVKI CDLRTAA S RAG+TT  ATG KRER A+ T S+ RSEEP+LSD  ESLGMPMQEA+ CRS ST SS H VGLKV EVGL AGLGAVGHHGDRER+QGEDG KAT  CA P GPENA HGHRQV PSGECSTRRCLS RLVQV S  GVSRR  EQ   SE SWA D DTDDESGAPDDWSVGTESAAE DACVATTVNERTREGFGSQRAG +SRSTN R APS+
Sbjct:    1 MKCLENTSRLSLTSLHNAARREDSASLQRLIATIDPLAADKIGAVLQDGDSRGACISSPRTPAAAPKNKEH--------TRCLSTRWPE----EKAPSRLKRLLQQQDSKRRTVLFVACASGNTEIADALLTVGASLDGHGAWQRTPLHIAAFEGHTSAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAAIMRREVSTGTEGLIGTTFVHDDGQVGTVVDAAERWTFTLEVDLDGWKMGNGSGVKLYLPVS----------------------------RSNPTSFAEPIPRLADTVQRMRLESEDLVNVTADSLIGARVSRRTPLGGGRVTAVRNVKIRCDLRTAASSTRAGLTTATATGSKRERRANATLSETRSEEPDLSDRGESLGMPMQEAQPCRSFSTTSSGHYVGLKVLEVGLTAGLGAVGHHGDRERHQGEDGPKATNSCATPRGPENAVHGHRQVAPSGECSTRRCLSTRLVQVASNHGVSRRQLEQWPPSEGSWANDGDTDDESGAPDDWSVGTESAAELDACVATTVNERTREGFGSQRAGTQSRSTNGRGAPSQ 537
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18497.1 vs. uniprot
Match: D7FIG7_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG7_ECTSI)

HSP 1 Score: 677 bits (1746), Expect = 3.620e-235
Identity = 399/576 (69.27%), Postives = 400/576 (69.44%), Query Frame = 1 
Query:    1 MKHLENTSRLSLTSLHNAARRGDSASLQRLIATIDPLAAEKIAAVLRDGDSRGACISSPRTAAAPKNKVKGKGAGRTTSKLVHAQGKSGGKKKKTPSRLKRLLQKQDSKRRTALYVACASGNTEIADALLTVGASLDGHGAWQRTPXXXXXXXXXXSAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAAIMRREVSTGTEGLIGMTFVHDDGQVGTVVDAVERWAFTLEVELDGWKMVNGSGAKLYLPVSGERLNTRAPPSSAGAADTTNDDGTTSGSRLNPASLAEPILWLADTVQRMRLESEDLVRVTADSLVGARVSRRTPLGGGRVTAVRNVKIGCDLRTAALSARAGMTTVPATGRKRERCADVTFSDARSEEPELSDLEESLGMPMQEARSCRSCSTASSDHDVGLKVPEVGLAAGLGAVGHHGDRERYQGEDGSKATIICARPMGPENADHGHRQVGPSGECSTRRCLSARLVQVVSKRGVSRRHREQRASSEDSWAKDCDTDDESGAPDDWSVGTESAAEFDACVATTVNERTREGFGSQRAGIESRSTNRRRAPSE 1728
            MKHL NTSRLSLTSLHNAARRGDS SLQRLIATIDPLAAEKIAAVLRDGDSRGACISSPRTAAAPKNKVKGKGAGRTTSKLVHAQGKSGGKKKKTPSRLKRLLQKQDSKRRTALYVACASGNTEIADALLTVGASLDGHGAWQRTPXXXXXXXXXXSAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAAIMRREVSTGTEGLIG TFVHDDGQVGTVVDAVERWAFTLEVELDGWKMVNGSGAKLYLP                                                                                                                                                                     VPEVGLAAGLGAVGHHGDRERYQGEDGSKATI CA P GPENA HGHRQVGPSGECSTRRCLSARLVQV SKRGVSRRHREQRASSEDSWAKD DTDDESGAPDDWSVGTESAAEFDACVAT VNERTREGFGSQRAGIESRSTNRR APS+
Sbjct:    1 MKHLANTSRLSLTSLHNAARRGDSTSLQRLIATIDPLAAEKIAAVLRDGDSRGACISSPRTAAAPKNKVKGKGAGRTTSKLVHAQGKSGGKKKKTPSRLKRLLQKQDSKRRTALYVACASGNTEIADALLTVGASLDGHGAWQRTPXXXXXXXXXXSAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAAIMRREVSTGTEGLIGTTFVHDDGQVGTVVDAVERWAFTLEVELDGWKMVNGSGAKLYLP---------------------------------------------------------------------------------------------------------------------------------------------------------------------VPEVGLAAGLGAVGHHGDRERYQGEDGSKATISCATPRGPENAGHGHRQVGPSGECSTRRCLSARLVQVASKRGVSRRHREQRASSEDSWAKDGDTDDESGAPDDWSVGTESAAEFDACVATPVNERTREGFGSQRAGIESRSTNRREAPSQ 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9A3_9PHAE1.520e-27876.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIG7_ECTSI3.620e-23569.27Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:612049..617776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score682.6
Seed ortholog evalue2.6e-193
Seed eggNOG ortholog2880.D7FIG7
Model size2784
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-28_000210.1
Cds size2784
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18497.1prot_Ecto-sp6_S_contig93.18497.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig93 612049..617776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350572.4311068-CDS-Ecto-sp6_S_contig93:612048..6122521682350572.4311068-CDS-Ecto-sp6_S_contig93:612048..612252Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 612049..612252 +
1682350572.4453976-CDS-Ecto-sp6_S_contig93:612849..6130061682350572.4453976-CDS-Ecto-sp6_S_contig93:612849..613006Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 612850..613006 +
1682350572.4563286-CDS-Ecto-sp6_S_contig93:613543..6138071682350572.4563286-CDS-Ecto-sp6_S_contig93:613543..613807Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 613544..613807 +
1682350572.464641-CDS-Ecto-sp6_S_contig93:614085..6142421682350572.464641-CDS-Ecto-sp6_S_contig93:614085..614242Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 614086..614242 +
1682350572.4731445-CDS-Ecto-sp6_S_contig93:614389..6153361682350572.4731445-CDS-Ecto-sp6_S_contig93:614389..615336Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 614390..615336 +
1682350572.4812043-CDS-Ecto-sp6_S_contig93:615843..6159291682350572.4812043-CDS-Ecto-sp6_S_contig93:615843..615929Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 615844..615929 +
1682350572.4894419-CDS-Ecto-sp6_S_contig93:616504..6169271682350572.4894419-CDS-Ecto-sp6_S_contig93:616504..616927Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 616505..616927 +
1682350572.5007145-CDS-Ecto-sp6_S_contig93:617230..6177761682350572.5007145-CDS-Ecto-sp6_S_contig93:617230..617776Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 617231..617776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig93.18497.1

>prot_Ecto-sp6_S_contig93.18497.1 ID=prot_Ecto-sp6_S_contig93.18497.1|Name=mRNA_Ecto-sp6_S_contig93.18497.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=928bp
MKHLENTSRLSLTSLHNAARRGDSASLQRLIATIDPLAAEKIAAVLRDGD
SRGACISSPRTAAAPKNKVKGKGAGRTTSKLVHAQGKSGGKKKKTPSRLK
RLLQKQDSKRRTALYVACASGNTEIADALLTVGASLDGHGAWQRTPLHIA
AFEGHTSAMRRLLGAGADPWALNDRGQTPSEVSQMFNANREALGLLEEAA
IMRREVSTGTEGLIGMTFVHDDGQVGTVVDAVERWAFTLEVELDGWKMVN
GSGAKLYLPVSGERLNTRAPPSSAGAADTTNDDGTTSGSRLNPASLAEPI
LWLADTVQRMRLESEDLVRVTADSLVGARVSRRTPLGGGRVTAVRNVKIG
CDLRTAALSARAGMTTVPATGRKRERCADVTFSDARSEEPELSDLEESLG
MPMQEARSCRSCSTASSDHDVGLKVPEVGLAAGLGAVGHHGDRERYQGED
GSKATIICARPMGPENADHGHRQVGPSGECSTRRCLSARLVQVVSKRGVS
RRHREQRASSEDSWAKDCDTDDESGAPDDWSVGTESAAEFDACVATTVNE
RTREGFGSQRAGIESRSTNRRRAPSEDIGLRTRRFSFLDDLVPLAALEGV
LDCNHLPPSAVAPQCRARRRQLLSHWNTRMSVSMAAGGGASAAPTSYQRR
RAHQHDILQHSSGGYSVSPSPASTQSMLEVDDLSERGARDGEGDDELLGI
VGLAEKIEREERSAERMDGRRIGVEATRKAVREALVLWSGKADILQGRLV
VLRTVSASVASTVASSHTRNATRSMSLEELLASPSPRCCACDMRDGYYER
DDYDRQTPIPPASDSILRGSDISTASNNGTIDTAQKHTSGPVAHACCSCA
AKGTNVGSEPYGNLHVDGASSDDYRNTCADVDDFGDTVKDTSTSREKGLV
VDLEECLVHMTHLRDWLRLLDQEIGQL*
back to top

mRNA from alignment at Ecto-sp6_S_contig93:612049..617776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig93.18497.1 ID=mRNA_Ecto-sp6_S_contig93.18497.1|Name=mRNA_Ecto-sp6_S_contig93.18497.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5728bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:612049..617776+ (Ectocarpus species6 EcLAC_371)
ATGAAACATCTCGAAAACACGTCGAGGCTCTCTCTCACCAGCCTGCACAA
TGCCGCCAGGCGAGGGGATTCAGCTTCCCTGCAACGCCTCATTGCTACCA
TTGACCCGCTCGCGGCGGAGAAGATTGCTGCGGTTCTACGAGACGGCGAC
AGCAGGGGGGCGTGCATCTCGAGTCCTCGCACTGCTGCCGCTCCTAAGAA
TAAGGTACAAAGGAACATGTGTGTGTGCGAGCCGTTGCCTGCCTGTATGC
ATCATGTACTTGTCCAGCAAATGTTTTGCCGAACTTTCTTCACATCTCCT
TCGAGTTCTACAATTTCCAGCAACATTGGCAGGTAACTCTGAAGCATCCA
GCTTTTCCAACGGTCGTGTACGTCCAAGACACATCTTCATAGCTGCATAA
AGCTTGATAGATTCCCCTGATACCACGACCGACCGCAGTCAGAAGACCGT
ACAAAGGTCCTACGTACAAGGTGACCTTGCTCGACTGGTGATTTGCATTC
CAAGTACTCCGTAGTACACTGCTGCATGTTGTGTTCTTTCGCACGTAAGT
CCGATTTCTGGAATCCTGGTTTGCAGACAAGGTATGTACAGGAGAACGCT
GCCCAAACAACTTGCAGTCAGCCACAGAGAGAGGTACACAACGAGGGGCC
AACATGGAAGGAATGAAACACTGCCGTCGATGCACCGGCTGAGGCTCTTG
CCCTGCAGTACAGCACAATCACGCTAGACTACCATGAACCGTCTGCATTT
TGTGTGACTTGCCGCCCGCACTGTGCGCGGTCCTCCTTTATTGTTGAGCA
GGTCAAGGGCAAAGGAGCTGGCAGAACCACATCAAAACTCGTGCACGCGC
AAGGAAAGTCAGGTGGCAAGAAGAAAAAAACTCCTAGCCGCTTGAAGCGA
TTGTTACAAAAACAGGACTCAAAGCGGCGCACGGCACTCTATGTGGCATG
TGCTTCCGGTGAGCAACAAGTATAAAAACCACGAGTTAAAGGTATCTTGA
GGTTGCACTGGATGCCCCACTGTGTTGCAGAGTCTAAGTGAGTGAAACCT
CATAGCCGATACTCTGCCTGTAAAACCTAAAACCTATCGTCACAAATCGT
TCTTCATACGACGGCTCTGTGCTACAACAGGGTCCGTTCGTCATGTAGTA
TGCCCGTTCGTCATGTAGTATGTCGTTCTTTCCGTCTCGAAGAACACATC
GGCCGTTTGTGGGCTTTCCTGCCCCCGAGGAGGAATTGAGACTCTCCCGC
CAACAATGAGCACCATCTTACAGCAGTCAAAGCCGATGCTATTCTAGGTA
AACAAAGTATTCGACGGATTGCATTCGAAGGACAACTGGCTGTTTTTTTC
GTGAGCAACGAGGAAGGTGTGCTACAATCGACCCCGAAGTACCCGCGTGT
TCCAGACCAAAAAAAAATGTTCTCGTCAGCAACGCAAGAACCCTGTTACA
GTGGTATTGCGCGTGCTGTTTTTGGCCTATCGCTGCCCTCCGCAGGAAAC
ACCGAAATAGCAGACGCTTTGCTGACGGTCGGTGCTAGCCTAGATGGCCA
CGGTGCCTGGCAAAGGACCCCGCTACACATCGCTGCCTTCGAGGGTCACA
CTTCGGCAATGCGCCGGCTGCTAGGTGCAGGAGCAGACCCCTGGGCCTTG
AACGATCGTGGACAGACCCCATCGGAAGTGAGCCAAATGTTCAACGCCAA
CCGTGAGGCCCTGGGGCTGCTTGAGGAGGCGGCCATTATGCGGCGAGAAG
TGTCCACAGGTACGTGTTTAGCCTCTGTACAACTAGAGCAGAACCACCCC
CGTGTCGAAACATCCAACCCTTCACACCCTTGGGCGGCCTAAGATCAATT
CACGAGTGCACAATTAGAATTTCTCGGCGCCCGCGCGAGGTCAACTCACA
CACCATATTCACACCGTATTTTCAGCACGAGGCTAACAATTGTTCGGCAC
GAGGGGAGTAGATCGCTGTTGTTGGCGATCCGTTTGGTGTGCGTGCTCAC
GGCGATCGGTCCTGCCGACACCCATCTCGTACCGCAGGAACGGAGGGGCT
GATAGGGATGACTTTCGTCCACGATGACGGCCAGGTCGGAACCGTTGTTG
ACGCGGTCGAGCGATGGGCGTTCACTCTGGAGGTCGAGCTGGACGGCTGG
AAGATGGTGAACGGCTCGGGAGCCAAGCTTTATCTTCCTGTGAGGTGCAC
GACCGCAAAACATTGCTTGATTATGAGCGCGTCACACGCCTTTTGTCGCC
GTTTCTGTCTGAAAGTGCCCGCAGCCCTGACCTAAACACACACCTCAGCG
TTGTCCCCGCGTGTCTCATTCCACGCGCGATAAATGAGCAGCGGTGAACG
GCTCAACACACGGGCACCGCCATCCTCGGCTGGGGCTGCTGATACAACGA
ATGATGACGGCACAACAAGCGGCAGCCGATTAAACCCAGCAAGTCTTGCT
GAGCCTATCCTGTGGCTGGCGGACACGGTGCAGAGGATGAGACTCGAGAG
CGAAGATCTGGTGAGGGTCACGGCAGACAGTCTCGTCGGAGCTAGGGTGT
CGAGGAGGACACCGCTCGGCGGCGGCAGGGTGACCGCGGTGCGAAACGTA
AAGATTGGTTGCGACCTCCGAACCGCCGCTTTGAGCGCGAGAGCCGGAAT
GACCACGGTCCCGGCGACCGGCAGAAAAAGAGAACGATGTGCCGATGTAA
CCTTCAGCGACGCACGCAGCGAAGAACCAGAATTGTCTGACCTGGAGGAG
TCGCTTGGAATGCCAATGCAAGAGGCCCGGTCGTGCCGTAGCTGCTCTAC
CGCCTCGAGCGATCACGATGTCGGTCTAAAGGTGCCGGAGGTGGGCCTTG
CTGCAGGGCTCGGGGCCGTTGGGCACCACGGGGATCGGGAAAGGTACCAA
GGCGAAGACGGCTCGAAAGCGACCATTATCTGTGCCAGGCCAATGGGTCC
GGAAAATGCAGACCATGGGCATCGACAAGTTGGGCCGTCGGGGGAGTGCT
CAACACGGCGTTGTCTCTCAGCGAGGCTTGTCCAAGTGGTGAGCAAGCGC
GGGGTATCGAGACGCCACCGGGAACAAAGGGCGTCCTCAGAAGATTCGTG
GGCAAAAGATTGCGACACCGACGACGAAAGCGGGGCTCCGGATGATTGGT
CGGTCGGAACGGAAAGTGCGGCGGAATTTGACGCATGCGTGGCAACCACC
GTGAACGAACGCACGCGTGAAGGCTTCGGGTCACAGCGGGCGGGAATAGA
GAGCCGTAGTACAAACCGCAGGAGAGCTCCGTCCGAAGGTGCTTATTCAG
CGGAACCGACTGCTGGGATGCACCTCTAGTTCTGGTTACCCTCCAAGTAT
TCACAGGAGTCAACGCTTAGATTCGTTTTCTTCTGGCATTGGGCTGTGCT
GGAGAGAGCGCAATCTCGGTGCATTGGAACGTCCCAAATCGGCTGCTGCT
ACTTGTATCAAGCGGTACTGGTGCAACGTAAATCGGAGAGCGTGGCTTGG
GCTGTCCGCGAGAACCTTCACCGAACGTGTTGAATGATTGGGTAGAGACA
TGTCAACGGTTAGGGCTAGATATTGGTTTCTTTGGGAACGTCGTGCTACA
GGTTGGACGAACTGTGTTCTGCGCGAGACAGGTGTGTCGCCTATTTACCA
GTTTTTCTTGTTAGAGTTAAGTCCATCGCGGTCGCTCGATTTCCCGCCAC
GAGCCCCCCTCCTCTAGCTTACTGCGAAACCTTGCCCAAGCTGACACTTG
CTCTGACCCAACCTCGTGCCCCCCCCCGCCGTTTTGAGGCCACAGACATT
GGGCTCCGTACCCGCCGCTTTTCTTTCCTGGATGACCTCGTGCCTCTGGC
TGCGTTGGAAGGCGTTCTTGACTGCAATCACGTGAGAGAGACCCCCTCCT
TCCAACCGTAGTCGCATTGCACTTAGTATTGAATTGTTTGTTCACGTGCC
CATCCATAAAACGCTTGGATGCTCTCCGTGCCTGCTGTCCCATTTGTTCT
GGACGCCAATCGTTCGCGCCTTTCGGTAAATATTTGTGGATGCATCAGCT
GGGGTCACATAGGAGGGATGGCCACACCTGAGTTGTTATTTTCTCCATCT
CCCTTCCGCTGCGGTTCTAGCCTTGAGGTTTATGGCGAATGACACAGCCG
CTCCTGCACTCGTTGACTTTGAAGTCGAACGCGTACCCGATTTCCACGTT
GTTTGGGCACTTTGGGAGAATAAGTCCGAATACGTGTGATTGCGCGGAGA
TTCGAACTCAAGTCCCCAACCAGACTGCGAGGTTACCAACTGAACCACTC
CGCCATTCTGTTATGTAACCAAGCTCTGGACACTCAAACTTCCGGCTCAG
TAGCTTCGTTGGTCTCTATTACAGGAGCACCGCACCATCCCCCTGACACA
CACTACTTGTGCGCGTACTGACACGGACACTTGACTCACTCCTCGCCCTC
GACTAGTTACCTCCATCGGCCGTGGCACCCCAATGTCGCGCTCGAAGACG
CCAGCTGCTGTCGCACTGGAACACACGAATGTCGGTATCGATGGCGGCGG
GAGGAGGAGCATCAGCAGCACCAACGTCCTACCAGCGACGTCGGGCTCAC
CAGCACGACATCCTCCAGCATTCGTCCGGAGGGTATTCCGTGTCGCCATC
TCCTGCTTCCACCCAATCGATGCTCGAGGTTGACGACTTGTCAGAGCGCG
GAGCCCGTGATGGAGAGGGAGACGACGAATTGCTTGGCATTGTGGGGTTG
GCAGAGAAAATCGAACGGGAGGAGCGCAGCGCCGAGCGGATGGACGGCAG
GCGGATTGGGGTGGAGGCCACGAGGAAAGCTGTTCGCGAGGCCCTAGTCT
TGTGGAGCGGAAAAGCAGACATCCTCCAGGTAAACCACGCACGGAAAGCA
GGCGTGGGAGCGCGATGACGATCTGATGCCCGAATTCCTGTTCTTGTCGA
GTGGTAAATGGCAGTATGACCTCCCGCAGTACAGACTCTAGTCAAGCAGA
GATGCACCTTCATAATTTTTGGCGACCGAACACAGGTTGAAAATAATCCT
CGCATCATGTAGACTAATCGGGTGCCGCCGTCGTTACAACCTGAATTTTC
ATGAAATCCTTCGCGGCGCCATTATATTTCTGCCTCACACACTCTCCCCC
GTTCCGGAACCCGCTGTCTAAAATACGGACAGGGGAGACTCGTGGTACTC
AGAACCGTGTCGGCGTCTGTAGCTTCTACGGTTGCAAGCAGCCATACCCG
AAATGCCACCCGCTCTATGTCCTTGGAAGAGTTGTTGGCCAGCCCATCAC
CACGGTGCTGCGCGTGTGACATGCGGGATGGTTACTACGAGCGGGATGAC
TACGACCGGCAGACGCCGATCCCGCCCGCTTCTGACAGTATCCTTCGAGG
CAGCGACATCTCCACAGCTTCGAACAACGGCACGATCGACACGGCACAGA
AGCATACCAGCGGGCCTGTCGCACACGCTTGTTGCTCCTGTGCCGCCAAG
GGTACCAACGTTGGCTCTGAGCCATATGGCAATCTCCATGTCGATGGTGC
AAGCAGCGACGACTATCGAAATACTTGTGCTGATGTTGACGATTTTGGCG
ATACGGTTAAGGACACCTCCACTTCGAGGGAGAAGGGGCTGGTTGTCGAC
CTAGAAGAGTGCCTGGTTCACATGACGCATCTAAGAGATTGGCTTCGTCT
GCTGGACCAAGAAATTGGTCAGCTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:612049..617776+

>mRNA_Ecto-sp6_S_contig93.18497.1 ID=mRNA_Ecto-sp6_S_contig93.18497.1|Name=mRNA_Ecto-sp6_S_contig93.18497.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2784bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:612049..617776+ (Ectocarpus species6 EcLAC_371)
ATGAAACATCTCGAAAACACGTCGAGGCTCTCTCTCACCAGCCTGCACAA
TGCCGCCAGGCGAGGGGATTCAGCTTCCCTGCAACGCCTCATTGCTACCA
TTGACCCGCTCGCGGCGGAGAAGATTGCTGCGGTTCTACGAGACGGCGAC
AGCAGGGGGGCGTGCATCTCGAGTCCTCGCACTGCTGCCGCTCCTAAGAA
TAAGGTCAAGGGCAAAGGAGCTGGCAGAACCACATCAAAACTCGTGCACG
CGCAAGGAAAGTCAGGTGGCAAGAAGAAAAAAACTCCTAGCCGCTTGAAG
CGATTGTTACAAAAACAGGACTCAAAGCGGCGCACGGCACTCTATGTGGC
ATGTGCTTCCGGAAACACCGAAATAGCAGACGCTTTGCTGACGGTCGGTG
CTAGCCTAGATGGCCACGGTGCCTGGCAAAGGACCCCGCTACACATCGCT
GCCTTCGAGGGTCACACTTCGGCAATGCGCCGGCTGCTAGGTGCAGGAGC
AGACCCCTGGGCCTTGAACGATCGTGGACAGACCCCATCGGAAGTGAGCC
AAATGTTCAACGCCAACCGTGAGGCCCTGGGGCTGCTTGAGGAGGCGGCC
ATTATGCGGCGAGAAGTGTCCACAGGAACGGAGGGGCTGATAGGGATGAC
TTTCGTCCACGATGACGGCCAGGTCGGAACCGTTGTTGACGCGGTCGAGC
GATGGGCGTTCACTCTGGAGGTCGAGCTGGACGGCTGGAAGATGGTGAAC
GGCTCGGGAGCCAAGCTTTATCTTCCTGTGAGCGGTGAACGGCTCAACAC
ACGGGCACCGCCATCCTCGGCTGGGGCTGCTGATACAACGAATGATGACG
GCACAACAAGCGGCAGCCGATTAAACCCAGCAAGTCTTGCTGAGCCTATC
CTGTGGCTGGCGGACACGGTGCAGAGGATGAGACTCGAGAGCGAAGATCT
GGTGAGGGTCACGGCAGACAGTCTCGTCGGAGCTAGGGTGTCGAGGAGGA
CACCGCTCGGCGGCGGCAGGGTGACCGCGGTGCGAAACGTAAAGATTGGT
TGCGACCTCCGAACCGCCGCTTTGAGCGCGAGAGCCGGAATGACCACGGT
CCCGGCGACCGGCAGAAAAAGAGAACGATGTGCCGATGTAACCTTCAGCG
ACGCACGCAGCGAAGAACCAGAATTGTCTGACCTGGAGGAGTCGCTTGGA
ATGCCAATGCAAGAGGCCCGGTCGTGCCGTAGCTGCTCTACCGCCTCGAG
CGATCACGATGTCGGTCTAAAGGTGCCGGAGGTGGGCCTTGCTGCAGGGC
TCGGGGCCGTTGGGCACCACGGGGATCGGGAAAGGTACCAAGGCGAAGAC
GGCTCGAAAGCGACCATTATCTGTGCCAGGCCAATGGGTCCGGAAAATGC
AGACCATGGGCATCGACAAGTTGGGCCGTCGGGGGAGTGCTCAACACGGC
GTTGTCTCTCAGCGAGGCTTGTCCAAGTGGTGAGCAAGCGCGGGGTATCG
AGACGCCACCGGGAACAAAGGGCGTCCTCAGAAGATTCGTGGGCAAAAGA
TTGCGACACCGACGACGAAAGCGGGGCTCCGGATGATTGGTCGGTCGGAA
CGGAAAGTGCGGCGGAATTTGACGCATGCGTGGCAACCACCGTGAACGAA
CGCACGCGTGAAGGCTTCGGGTCACAGCGGGCGGGAATAGAGAGCCGTAG
TACAAACCGCAGGAGAGCTCCGTCCGAAGACATTGGGCTCCGTACCCGCC
GCTTTTCTTTCCTGGATGACCTCGTGCCTCTGGCTGCGTTGGAAGGCGTT
CTTGACTGCAATCACTTACCTCCATCGGCCGTGGCACCCCAATGTCGCGC
TCGAAGACGCCAGCTGCTGTCGCACTGGAACACACGAATGTCGGTATCGA
TGGCGGCGGGAGGAGGAGCATCAGCAGCACCAACGTCCTACCAGCGACGT
CGGGCTCACCAGCACGACATCCTCCAGCATTCGTCCGGAGGGTATTCCGT
GTCGCCATCTCCTGCTTCCACCCAATCGATGCTCGAGGTTGACGACTTGT
CAGAGCGCGGAGCCCGTGATGGAGAGGGAGACGACGAATTGCTTGGCATT
GTGGGGTTGGCAGAGAAAATCGAACGGGAGGAGCGCAGCGCCGAGCGGAT
GGACGGCAGGCGGATTGGGGTGGAGGCCACGAGGAAAGCTGTTCGCGAGG
CCCTAGTCTTGTGGAGCGGAAAAGCAGACATCCTCCAGGGGAGACTCGTG
GTACTCAGAACCGTGTCGGCGTCTGTAGCTTCTACGGTTGCAAGCAGCCA
TACCCGAAATGCCACCCGCTCTATGTCCTTGGAAGAGTTGTTGGCCAGCC
CATCACCACGGTGCTGCGCGTGTGACATGCGGGATGGTTACTACGAGCGG
GATGACTACGACCGGCAGACGCCGATCCCGCCCGCTTCTGACAGTATCCT
TCGAGGCAGCGACATCTCCACAGCTTCGAACAACGGCACGATCGACACGG
CACAGAAGCATACCAGCGGGCCTGTCGCACACGCTTGTTGCTCCTGTGCC
GCCAAGGGTACCAACGTTGGCTCTGAGCCATATGGCAATCTCCATGTCGA
TGGTGCAAGCAGCGACGACTATCGAAATACTTGTGCTGATGTTGACGATT
TTGGCGATACGGTTAAGGACACCTCCACTTCGAGGGAGAAGGGGCTGGTT
GTCGACCTAGAAGAGTGCCTGGTTCACATGACGCATCTAAGAGATTGGCT
TCGTCTGCTGGACCAAGAAATTGGTCAGCTGTAG
back to top