mRNA_Ecto-sp6_S_contig93.18494.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig93.18494.1
Unique NamemRNA_Ecto-sp6_S_contig93.18494.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:585288..586251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size964
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_000180.1
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350571.9990077-UTR-Ecto-sp6_S_contig93:585287..5854421682350571.9990077-UTR-Ecto-sp6_S_contig93:585287..585442Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig93 585288..585442 +
1682350572.022786-UTR-Ecto-sp6_S_contig93:585637..5862511682350572.022786-UTR-Ecto-sp6_S_contig93:585637..586251Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig93 585638..586251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350572.0110996-CDS-Ecto-sp6_S_contig93:585442..5856371682350572.0110996-CDS-Ecto-sp6_S_contig93:585442..585637Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 585443..585637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18494.1prot_Ecto-sp6_S_contig93.18494.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig93 585443..585637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig93.18494.1

>prot_Ecto-sp6_S_contig93.18494.1 ID=prot_Ecto-sp6_S_contig93.18494.1|Name=mRNA_Ecto-sp6_S_contig93.18494.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=65bp
MVCLSLSRYVRSVRRHAIGGSELFVVLACFRCNTLWLYSSLVLRASSLPL
RWCRVERRPQEVER*
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mRNA from alignment at Ecto-sp6_S_contig93:585288..586251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig93.18494.1 ID=mRNA_Ecto-sp6_S_contig93.18494.1|Name=mRNA_Ecto-sp6_S_contig93.18494.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=964bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:585288..586251+ (Ectocarpus species6 EcLAC_371)
GCCGGCACGGCGTGATAGCCAAGGGGGTTGCGGAAGCAACGAACGGCATG
TTCAGCATCACTGCTTGGCCTTGACCCTTTCTCTTGAACGTTTGGTGTTT
GTTTGTCTACCTCTTGGGAAGGTACTGTAGCACGGTAGGATAGCGATTCA
ACACGATGGTGTGCCTCTCTCTCTCGCGGTACGTTCGGTCAGTACGCAGA
CACGCCATCGGCGGATCGGAATTATTTGTCGTTCTCGCTTGCTTTCGTTG
TAATACGTTGTGGTTGTACAGTAGTCTCGTGCTGCGCGCGTCGTCATTGC
CTTTGCGTTGGTGCCGCGTTGAGAGACGACCACAAGAGGTTGAAAGATGA
GCGTGATTTGTTCTCTGCTGTTTGTCGGCTGGTGGTGGAGTGTACCCTCG
AATTTTCCGGGACTGGCGGTTGGGCTCGATCGAGCGCGATGTTGTTGTGT
TTGTATTGAGTGCTATTATAATGTTTGTCGATTTGAAATGGCGGGCATTG
ATTTGTGTTATTTTGCAAAGTGTGGCGTCCGGTGTGCGACTTTGAAGCTT
GGTCGGCGGAGGGGAAGGGCCGATAGCTGATTGCACAAGAGGCTGTGTGA
GTGAATTACTCTTACAAGATAGACTTGCGAATGGCCGTTTGGGTGAAGCA
TGTTCGTACGCATCCGTGTGCATGCGTCCGTTCCCGCACTCATCAAATAG
TTCTGGAAAGGTAAACGTTCTTGTGAGGGTACCGGAAGCACTGGCCTTCA
TTGTGGCAACAATCGCCTGTCCCCGCGAGGGGTATCTCTCGAGTTTTGTC
ATAGGGGGAAGGGTTTTGTTTCGCATTTGAGATACCATATGATGTTGTAT
TGCAGAGAAGCGGAGCGACAGAGGAGCACCATACATCGGGTCGAATTGCG
AGCTATGGAAAACCCGTGCTATCTACTTCACGGAAAATATGATCCCTCCG
AGGGTGTTTGTGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:585288..586251+

>mRNA_Ecto-sp6_S_contig93.18494.1 ID=mRNA_Ecto-sp6_S_contig93.18494.1|Name=mRNA_Ecto-sp6_S_contig93.18494.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:585288..586251+ (Ectocarpus species6 EcLAC_371)
ATGGTGTGCCTCTCTCTCTCGCGGTACGTTCGGTCAGTACGCAGACACGC
CATCGGCGGATCGGAATTATTTGTCGTTCTCGCTTGCTTTCGTTGTAATA
CGTTGTGGTTGTACAGTAGTCTCGTGCTGCGCGCGTCGTCATTGCCTTTG
CGTTGGTGCCGCGTTGAGAGACGACCACAAGAGGTTGAAAGATGA
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