mRNA_Ecto-sp6_S_contig93.18461.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig93.18461.1
Unique NamemRNA_Ecto-sp6_S_contig93.18461.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: A0A7S1UGK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGK4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.900e-14
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   13 LSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSM--PPRDLSTINLAHELHKYGVNMRHIGLLRAYV 240
            L+PDALTAF   D +    NRDV EAT FL   ++PA A  LC+       +  +N++ E+HK GVNMRH+GLLRA++
Sbjct:   30 LNPDALTAFGRHDEDVFEHNRDVKEATLFLFRDVIPALATSLCAKYKTASAVRKMNVSLEMHKCGVNMRHLGLLRAHI 107
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BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: D3BCU8_POLPP (Clu domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BCU8_POLPP)

HSP 1 Score: 70.1 bits (170), Expect = 9.080e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLSTINLAHELHKYGVNMRHIGLLRAYV 240
            PLS DA + +S  DP  K+ N+DVT+AT  L  V++   A  L S    DL  ++LA E+HK+G+N+RH+G LR+ V
Sbjct:  466 PLSSDAFSGWSAADPNYKSYNQDVTDATNHLYDVIIREAATELESRKDSDLKKLDLAVEVHKFGINLRHLGRLRSQV 542
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BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: D7G5H0_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H0_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.040e-10
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLSTINLAHELHKYGVNMRHIGLLR 231
            PLSPDALT F+ G  +   RN+++ +AT  +L   VP     L S+P     T++L  ELH++GVN+RH+G +R
Sbjct:  171 PLSPDALTFFTKGSTDRAERNQEIHDATAAMLEAAVPNVVEKLTSLPQDVQKTLHLDVELHRHGVNVRHLGRVR 244
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BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: A0A1V9YQ23_9STRA (Clu domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ23_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.210e-10
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    4 PPPLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLST-INLAHELHKYGVNMRHIGLLRA 234
            P PLS DAL+  SN  P+ +     VT AT  LL  ++PA AR L + P    +   NL HELH++G+N+RH+GLLRA
Sbjct: 1457 PAPLSSDALSFLSNQTPDWETHVDRVTAATTQLLDDIIPAFARKLVTRPNYVTAPHFNLVHELHRHGINVRHLGLLRA 1534
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BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: A0A2D4BZ70_PYTIN (Clu domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZ70_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 5.630e-8
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLS-TINLAHELHKYGVNMRHIGLLRA 234
            PLS DAL+  +   P+ +A+   V  ATQ L+ V++PA A  L   P    + T  L  E+H++G+NMRH+GLLRA
Sbjct: 1651 PLSSDALSCMTYATPDWQAQALGVEAATQHLVDVVIPAFAAKLSRKPHYFTAPTFRLTLEMHRHGINMRHLGLLRA 1726
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BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: T0PZQ0_SAPDV (Clu domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PZQ0_SAPDV)

HSP 1 Score: 58.9 bits (141), Expect = 7.680e-8
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPR-DLSTINLAHELHKYGVNMRHIGLLRA 234
            PLS DAL+  +N  P+ +     VT AT  LL  ++PA AR L + P   D    +L  ELH++G+N+RH+G LRA
Sbjct: 1467 PLSSDALSFLTNQTPDWETHVERVTAATAHLLDDVIPAFARKLATRPMYVDAPGFDLVAELHRHGINVRHLGYLRA 1542
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: D3BAC8_POLPP (Clu domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAC8_POLPP)

HSP 1 Score: 58.2 bits (139), Expect = 1.410e-7
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLSTINLAHELHKYGVNMRHIGLLRAYV 240
            PL+ DA T +S+ DP+ +  N+DV +AT+ L  V++   A L       D  + ++A E+HK G+N+RH+G LR+ +
Sbjct:  562 PLNSDAFTGWSSCDPDQEQHNQDVADATKHLFDVVIRQAA-LELEARTEDEESFDVAVEVHKLGINLRHLGRLRSQI 637
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: A0A7S0DIC4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIC4_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.600e-7
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLSTINLAHELHKYGVNMRHIGLLR 231
            PLS DALT +     +    N  + EAT+ L   ++PA A      P   L  I+++ ELH+ G+N+RH+GLLR
Sbjct:  419 PLSCDALTRWGQTYTDRHKHNERLREATRILCNEVIPAFAEEFAKRPVERLKAIHVSEELHRKGINVRHMGLLR 492
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: A0A2P6MUG9_9EUKA (Clu domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MUG9_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.580e-7
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEA-------------KARNRDVTEATQFLLTVLVPATARLLCSMPPRDLST--INLAHELHKYGVNMRHIGLLRAYVAPP 249
            PLSPDAL   ++  PE              KA  RD+ EAT++L   +VPA A  L     R  +T  + + HELHK G+N+RHIG LR +   P
Sbjct:  275 PLSPDALCKMTS--PEVLLREVGVGEEFSPKAHARDIMEATEYLYKGIVPAFAEFLDEHYGRPSTTTKLRIIHELHKRGINVRHIGRLRYFCQNP 367
[Close]
BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Match: Q54YP3_DICDI (Clu domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54YP3_DICDI)

HSP 1 Score: 57.0 bits (136), Expect = 3.590e-7
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   10 PLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMPPRDLSTINLAHELHKYGVNMRHIGLLRAYV 240
            PLS DALT +   D  A   N  V EA+  L   ++P  A  L ++  R+   I+L  ELH+ GVN RH+GL+R YV
Sbjct:  629 PLSSDALTGWGKFDSLALEHNNQVKEASFRLFLKVIPELAHYLNNLDKRE---IHLTQELHRVGVNCRHMGLVRRYV 702
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UGK4_9STRA8.900e-1448.72Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D3BCU8_POLPP9.080e-1245.45Clu domain-containing protein n=1 Tax=Polysphondyl... [more]
D7G5H0_ECTSI1.040e-1043.24eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A1V9YQ23_9STRA7.210e-1047.44Clu domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A2D4BZ70_PYTIN5.630e-843.42Clu domain-containing protein n=1 Tax=Pythium insi... [more]
T0PZQ0_SAPDV7.680e-843.42Clu domain-containing protein n=2 Tax=Saprolegnia ... [more]
D3BAC8_POLPP1.410e-737.66Clu domain-containing protein n=1 Tax=Polysphondyl... [more]
A0A7S0DIC4_9EUKA2.600e-739.19Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A2P6MUG9_9EUKA3.580e-740.00Clu domain-containing protein n=1 Tax=Planoprotost... [more]
Q54YP3_DICDI3.590e-742.86Clu domain-containing protein n=1 Tax=Dictyosteliu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:159903..161662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.9
Seed ortholog evalue5e-11
Seed eggNOG ortholog227086.JGI_V11_135819
Model size323
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
Cds size321
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350567.2203016-CDS-Ecto-sp6_S_contig93:159904..1600571682350567.2203016-CDS-Ecto-sp6_S_contig93:159904..160057Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 159905..160057 -
1682350567.2325628-CDS-Ecto-sp6_S_contig93:160565..1606591682350567.2325628-CDS-Ecto-sp6_S_contig93:160565..160659Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 160566..160659 -
1682350567.2422986-CDS-Ecto-sp6_S_contig93:161588..1616621682350567.2422986-CDS-Ecto-sp6_S_contig93:161588..161662Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 161589..161662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18461.1prot_Ecto-sp6_S_contig93.18461.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig93 159905..161662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig93.18461.1

>prot_Ecto-sp6_S_contig93.18461.1 ID=prot_Ecto-sp6_S_contig93.18461.1|Name=mRNA_Ecto-sp6_S_contig93.18461.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
GPPPLSPDALTAFSNGDPEAKARNRDVTEATQFLLTVLVPATARLLCSMP
PRDLSTINLAHELHKYGVNMRHIGLLRAYVAPPVREGPLAAAAAAGVTVS
ARAATSK
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mRNA from alignment at Ecto-sp6_S_contig93:159903..161662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig93.18461.1 ID=mRNA_Ecto-sp6_S_contig93.18461.1|Name=mRNA_Ecto-sp6_S_contig93.18461.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1760bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:159903..161662- (Ectocarpus species6 EcLAC_371)
GGGCCGCCGCCCCTGAGCCCGGACGCGCTAACCGCCTTTTCGAATGGGGA
CCCTGAGGCGAAGGCGAGGAACAGGTGAGGGTCTTAAGTTCGGGGCGGTG
GTCGGTACGCTGGTTTTATGGTTTTGGTTTTTTTGTTCTTGCGGTGTAGC
GCTTCATGTGATGGCGAGGGTTCGGCGGCGTGGGTTTTGCCCGCCGGCAT
TGAAGTCGAACGACCCACAACCCACAGGAAGCTAGCTAGGGGGAGGTATT
TGTCGTCAGTCCCCCCGTCCCCCCCTTTGTACCTTGATGCGCTTGTTACG
TCGAGTGCGCGTGTACCGATGGTTGCATGAGATGCCATACCCGCTGGGCC
AATTTTCGACGCTCGATTTTTCCACCAAGAAGGGGACGACAGCAAAACAA
CCGCAGTTTTTGGGAGAGAAAGCTTTCCACTAAATTGGCGGTTCCAACGC
CGCCATTTTGGGGCACCGTTGTCGAGCTGCTTGTGCCCCGGAATTCCGGG
CTTTGGAGATTGGTGCGCATGAGGTTGTGGTGTCTTGTGCAGCCCGCAGG
GTGTTTGGCACTCGGACGGTGTGCCCTGCCGTCCTGAGTGGCGGCCTTTT
TCACTATAGGTGTACGCGTGTGGATGGAACGTGAACCCGAGTCACCGGGG
GGCACGCGGCCGGTGTTAAGTAACCGCCAGGGGATACGCTTGTCCTCTCG
CCTGTTCTTTCTTGGTTCTCTTTTGTGCGGACCCCTTCTTGTCCTTGGTG
TTGCGTATCTCACATGAACGACTTCGTCGCCCCCCCTCTCTCGTCGCCTT
GGCCCCACCCACCACTTCTCCTGTTTTTGTTTTTGTTTTTCTCCTTGGCG
GACCTCCCTCCCTCCCTCCCACGGTCGCCCCGACCCCAACTTCTTCTTGG
CGCACGCCTCTTTTTCGAACGATTTTTGGGCGGTTCGGATCGTACCTCGT
GCGTGTTTGGGCTGCGTGTTGGTCGCCGTGTCGCGCGCGCCCCCAAAAAA
AAGAGACGTGACGGAAGCCACGCAGTTCTTGCTGACCGTCCTGGTGCCGG
CCACCGCTCGGCTCCTGTGCTCCATGCCGCCGAGAGACCTATCAACGGTA
AGCCGCCTTCTCCTCCGGTCTTCAAGACGACCGAAGCTTGGCTGCTGCCT
CTGACACTTGCGCGGCAGAATGGCCGTAGAGTCGTTGTTGGACGTAAAGT
TACTTTGGATATGTATGACCGGGGTAAGGTGTACCGTTGGTCTGGGACGT
TGTTCGCTCGGGATCAGCCGGTAGGTTTCGAGCCTCCCGCCTGGTGCTGT
CGCGTGTGTCCAGTCCGTACGCCAATGTTTTTATTTAGCGGTTGTCTTGT
TCAAAAGCGTTGGTTTTACGACGTTGTGGCATGATTTGTGAGTTTACCTC
ATATTTTTTCTGGGGAAAGGGCTACAGGCTATATGTGCTCTTTGTGGCTA
GCACCATCTGACACTTTGTTGGGTCGGTAACCCCTTAGGTACGTCTGTTT
CAGCAGCGGAGAGCGTAGACCCACCTCGAAGCGACCTCCGAGTCTAATTC
ATCATCATGCCCCCCCGCCCCCTGTACATGCTACCACGGCACCCCAATAC
GTCAGATCAACCTGGCCCACGAGCTTCACAAGTACGGCGTGAACATGCGG
CACATCGGCCTCCTCCGAGCCTACGTGGCCCCCCCGGTTCGCGAGGGCCC
CTTGGCAGCCGCCGCCGCCGCCGGTGTTACCGTGTCGGCGAGGGCGGCTA
CCAGCAAGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:159903..161662-

>mRNA_Ecto-sp6_S_contig93.18461.1 ID=mRNA_Ecto-sp6_S_contig93.18461.1|Name=mRNA_Ecto-sp6_S_contig93.18461.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:159903..161662- (Ectocarpus species6 EcLAC_371)
GGGCCGCCGCCCCTGAGCCCGGACGCGCTAACCGCCTTTTCGAATGGGGA
CCCTGAGGCGAAGGCGAGGAACAGAGACGTGACGGAAGCCACGCAGTTCT
TGCTGACCGTCCTGGTGCCGGCCACCGCTCGGCTCCTGTGCTCCATGCCG
CCGAGAGACCTATCAACGATCAACCTGGCCCACGAGCTTCACAAGTACGG
CGTGAACATGCGGCACATCGGCCTCCTCCGAGCCTACGTGGCCCCCCCGG
TTCGCGAGGGCCCCTTGGCAGCCGCCGCCGCCGCCGGTGTTACCGTGTCG
GCGAGGGCGGCTACCAGCAAG
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