mRNA_Ecto-sp6_S_contig92.18439.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18439.1
Unique NamemRNA_Ecto-sp6_S_contig92.18439.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.380e-47
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 TGTLGELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            TGTLGELNRLVAMAEDLGDMVSRHVM EDIQRRELAL PGPKAYYTAIRTGLCNAYLAASVVCS LVCTSKTGRMGTAGKTLEFLSSAVPV
Sbjct:  455 TGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPV 545
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.590e-45
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 TGTLGELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            TGTLGE+NRLVAMAEDLG MVSRHVM EDIQRRELAL PGPKAYYTAIRTGLCNAYLAASVVCS LVCTSKTGRMG AGKTLEFLSSAVPV
Sbjct:  667 TGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPV 757
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.090e-45
Identity = 86/91 (94.51%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 TGTLGELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            TGTLGELNRLVAMAEDLGDMVSRHV  EDIQRRELAL PGPKAYYTAIRTGLCNAYLAASVV S LVCTSKTGRMGTAGKTLEFLSSAVPV
Sbjct:  482 TGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPV 572
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.890e-33
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   64 SRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            SRHV+ E IQRRELAL PGPKAYY AIRTGLCNAYLAASVVCS LVCTSKTGRMGTAGKTL+FLSSAVPV
Sbjct:    8 SRHVVNEAIQRRELALPPGPKAYYMAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLKFLSSAVPV 77
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.080e-20
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   16 ELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            +L  L+ MA+ LG++   H   +D+QR+ELAL P  KAYYTA+R+GLCNAYLAASV+ S  V TSKTG MG  G  L  LSSAVPV
Sbjct:  527 KLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPV 612
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.130e-20
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:   16 ELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            +L  LV MA+ LG++   H    D+QR+ELAL P  KAYYTA+R+GLCNAYLAASV+ S  V T KTG MG  G  L  LSSAVPV
Sbjct:  487 KLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPV 572
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.360e-20
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:   16 ELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            +L  LV M+  LG++V +H    D++R EL L P  KAYYTA+RTG+CNAYLAASV+ S  V TSKTG MG AG  L+ +S A+PV
Sbjct:  372 KLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPV 457
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BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.280e-19
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   19 LNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            L  LV M+  LG++  RH    ++QR+ELAL P  KAYYTAIRTGLC AYLAAS + S  V TSKTG MG  G  L+ +SSAVP+
Sbjct:  411 LGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPL 495
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.450e-19
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   10 LGELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            L +LNRL  MA  LG++ S H+  + +Q RE  L    KAY+ A+R G+CNA+LA+SVV S LV TSKTG +GTAGK L  LS+AVP+
Sbjct:  798 LRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPM 885
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.570e-18
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   10 LGELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRTGLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV 273
            L +LNRL  MA  L ++ S H+  + +Q RE  L    KAY+ A+R G+CNA+LA+SVV S LV TSKTG +GTAGK L+ LS+AVP+
Sbjct:  771 LRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPM 858
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FUA2_ECTSI1.380e-4796.70Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA0_ECTSI1.590e-4593.41Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI2.090e-4594.51Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5JSF6_9PHAE1.890e-3390.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI1.080e-2059.30Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KZF6_9PHAE5.130e-2059.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHA2_ECTSI9.360e-2055.81Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI3.280e-1957.65Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE8.450e-1954.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI1.570e-1853.41Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:600684..601335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.3
Seed ortholog evalue5.1e-41
Seed eggNOG ortholog2880.D7FUA2
Model size273
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350564.845559-CDS-Ecto-sp6_S_contig92:600683..6007251682350564.845559-CDS-Ecto-sp6_S_contig92:600683..600725Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 600684..600725 -
1682350564.8550835-CDS-Ecto-sp6_S_contig92:600861..6010291682350564.8550835-CDS-Ecto-sp6_S_contig92:600861..601029Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 600862..601029 -
1682350564.865514-CDS-Ecto-sp6_S_contig92:601272..6013351682350564.865514-CDS-Ecto-sp6_S_contig92:601272..601335Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 601273..601335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18439.1prot_Ecto-sp6_S_contig92.18439.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 600684..601335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18439.1

>prot_Ecto-sp6_S_contig92.18439.1 ID=prot_Ecto-sp6_S_contig92.18439.1|Name=mRNA_Ecto-sp6_S_contig92.18439.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=91bp
TGTLGELNRLVAMAEDLGDMVSRHVMKEDIQRRELALRPGPKAYYTAIRT
GLCNAYLAASVVCSRLVCTSKTGRMGTAGKTLEFLSSAVPV
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mRNA from alignment at Ecto-sp6_S_contig92:600684..601335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18439.1 ID=mRNA_Ecto-sp6_S_contig92.18439.1|Name=mRNA_Ecto-sp6_S_contig92.18439.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=652bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:600684..601335- (Ectocarpus species6 EcLAC_371)
ACGGGCACGCTCGGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCT
AGGCGACATGGTGGTGAGCGTTGCACTGTAGTCTAGGGATCCCTCGGCCC
ACACCAAGAACGGGTAAGGGCCTGACGGACGCATTTTTGCCGAATTTTTT
TACGGTACACCTTTTGTACTAACCTGGAAGGCCTTCCAATTGCAGGTTTC
CTTGTGCCGGTGGCCCTTCACACACGCACATGGATTGCATTCCTCCTGCT
TCCCTAACGATGTTTTGGCCCAACGTTACTGCAAACTACGATGTATTTGT
GCGCAGTCGAGACACGTGATGAAGGAAGACATACAACGGCGGGAGCTGGC
GTTGCGCCCGGGTCCCAAGGCATACTACACGGCAATCCGAACTGGTCTGT
GTAACGCGTACCTCGCAGCCAGCGTCGTCTGCAGTCGCTTGGTTTGCACA
AGCAAGACCGGTCGCATGGGTACGGTGAGTGCTGCCGCCGCTTAGGCCTC
CGCATGTTGCTGCATTTGGGCTTGTAGTGTTTCGTGTCTGTGTCGCACTA
CTCGCCCTGTTACTTCGCATGAGTGTCAATCGGATGTCGTTGTTCCATTT
CCTCTTGCAGGCAGGGAAGACCTTGGAGTTTCTGTCGAGCGCGGTGCCTG
TG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:600684..601335-

>mRNA_Ecto-sp6_S_contig92.18439.1 ID=mRNA_Ecto-sp6_S_contig92.18439.1|Name=mRNA_Ecto-sp6_S_contig92.18439.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:600684..601335- (Ectocarpus species6 EcLAC_371)
ACGGGCACGCTCGGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCT
AGGCGACATGGTGTCGAGACACGTGATGAAGGAAGACATACAACGGCGGG
AGCTGGCGTTGCGCCCGGGTCCCAAGGCATACTACACGGCAATCCGAACT
GGTCTGTGTAACGCGTACCTCGCAGCCAGCGTCGTCTGCAGTCGCTTGGT
TTGCACAAGCAAGACCGGTCGCATGGGTACGGCAGGGAAGACCTTGGAGT
TTCTGTCGAGCGCGGTGCCTGTG
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