mRNA_Ecto-sp6_S_contig92.18438.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18438.1
Unique NamemRNA_Ecto-sp6_S_contig92.18438.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.780e-74
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 1 
Query:    1 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            DIAPDSTDCCLLARTLALQLSDGYVDGTLPT DTAEERG+H TAGMGGVEG CGW+QDIGASPDSATEEAVMDWFVEEVA+YEPNN+DARKTTAAVQAGR+LGKRHLQTLLKAVGR CLRGTNTPDEKV
Sbjct:  574 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKV 702
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 6.690e-74
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 1 
Query:    1 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            D+APDSTDCCLLAR LALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEG CGW+QDIGASPDSATEEAVMDWFVEEVA+YEPN LDARKTTAAVQAGR+LG RHLQTLLKAVGR CLRGTNTPDEKV
Sbjct:  601 DMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKV 729
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 9.860e-74
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 1 
Query:    1 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            DIAPDSTDCCLLARTLALQLSDGYVDGTLPT DTAEERGTHTTAGMGGVEG CGW+QDIGASPDSATEEAVMDWFVEEVA+YEPNNLDARKTT AVQAGR+LG RHLQTLLKAVGR CLRGTNTPDEKV
Sbjct:  786 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKV 914
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.610e-47
Identity = 81/97 (83.51%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQ 291
            DIAPDS  CC LARTLALQLSDGYVDG LPT DTAEERGTHTTAG GG      W+QDIGASPD ATEEAVMDWFVEEVA+YEPNNLDARKTT AVQ
Sbjct:  106 DIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAGGGG------WSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAVQ 196
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.500e-37
Identity = 74/102 (72.55%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   82 TLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            TL +   A  RG   T G G       W+QDIGASPDSATEEAVMDWFVEEVA+YEPNNLD RKTT AVQAGR+LGKRHLQ +LKAVGR CLRGTNT DEKV
Sbjct:   25 TLRSCARAGYRGLFATGGGG-------WSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDTRKTTPAVQAGRKLGKRHLQIILKAVGRDCLRGTNTADEKV 119
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.300e-27
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:    1 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            D+A D+ + C LAR LAL++++G   GT+ T D +          +GG     GWN D+GA PD  +EEAVM+WF EEVA +E N   +R T A  QAGRRLGK+HL+ LL AVG+G L GTNT +EKV
Sbjct:  208 DLAADAVERCSLARRLALRMTEGLAAGTISTTDNS----------VGGR----GWNLDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAE-QAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKV 321
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: D8LGB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB9_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 8.910e-27
Identity = 62/129 (48.06%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:    1 DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            D+APD+ +CC LART+AL+L+DG  DG + T   AEE+ T   AG+G   G        G   D  +EEAVM+WF+EEV  YEP+  D R+T     AG RLGKRHL+ +L AVG+ C +G N    KV
Sbjct:  160 DLAPDAVECCKLARTVALRLTDGLPDGPIATSHDAEEKRTPNAAGVGWAAG----GSKFGVLTDGVSEEAVMEWFIEEVTNYEPS--DRRET-----AGSRLGKRHLRKILTAVGQDCPQGANDTGAKV 277
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: A0A6H5JH23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH23_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.710e-20
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   64 DGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQ 291
            D Y +  L +   A  RG   TA  G       W+QDIGASPD+ATEEAVMDWFVEEVA+YEPNNLDARKTT AVQ
Sbjct:   18 DEYSNTKLRSCARAGYRGLFATAWGG-------WSQDIGASPDAATEEAVMDWFVEEVADYEPNNLDARKTTPAVQ 86
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.290e-19
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:    4 IAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            +A D+ +CC LAR LALQL+DG  D T    D A++  TH TAGM G  G     +D   SPD   E+ V ++ +EEVA YE ++            G+RLGK+HL+ LLKA+ RGCL G++   +K+
Sbjct:  602 MAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSGS---GRDADISPDDMIEDDVFEYLLEEVARYERSD----------HGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKM 716
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BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 5.070e-18
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:    4 IAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGRRLGKRHLQTLLKAVGRGCLRGTNTPDEKV 387
            +A D+ +CC LAR LALQL+DG  D T    D  ++  THTTAGM G  G     +D    PD   E+ V +  +EEVA YE ++            G+RLGK+HL+ LLKA+ RGCL G++   +K+
Sbjct:  642 MAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMNGGSGS---GRDADILPDIIIEDDVFEHLLEEVARYERSD----------HGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKM 756
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FUA2_ECTSI2.780e-7493.02Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI6.690e-7493.02Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA0_ECTSI9.860e-7493.80Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JSF6_9PHAE2.610e-4783.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC16_9PHAE2.500e-3772.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEA4_9PHAE2.300e-2750.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB9_ECTSI8.910e-2748.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH23_9PHAE8.710e-2063.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZF6_9PHAE2.290e-1942.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI5.070e-1842.19Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:599387..600484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score247.7
Seed ortholog evalue3e-63
Seed eggNOG ortholog2880.D7FUA0
Model size390
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size390
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350564.8039823-CDS-Ecto-sp6_S_contig92:599386..5994851682350564.8039823-CDS-Ecto-sp6_S_contig92:599386..599485Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 599387..599485 -
1682350564.8141127-CDS-Ecto-sp6_S_contig92:599645..5997851682350564.8141127-CDS-Ecto-sp6_S_contig92:599645..599785Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 599646..599785 -
1682350564.822084-CDS-Ecto-sp6_S_contig92:600333..6004841682350564.822084-CDS-Ecto-sp6_S_contig92:600333..600484Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 600334..600484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18438.1prot_Ecto-sp6_S_contig92.18438.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 599387..600484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18438.1

>prot_Ecto-sp6_S_contig92.18438.1 ID=prot_Ecto-sp6_S_contig92.18438.1|Name=mRNA_Ecto-sp6_S_contig92.18438.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=130bp
DIAPDSTDCCLLARTLALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVE
GVCGWNQDIGASPDSATEEAVMDWFVEEVAEYEPNNLDARKTTAAVQAGR
RLGKRHLQTLLKAVGRGCLRGTNTPDEKV*
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mRNA from alignment at Ecto-sp6_S_contig92:599387..600484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18438.1 ID=mRNA_Ecto-sp6_S_contig92.18438.1|Name=mRNA_Ecto-sp6_S_contig92.18438.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1098bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:599387..600484- (Ectocarpus species6 EcLAC_371)
GACATCGCGCCCGACTCGACTGACTGTTGTTTGCTGGCGAGGACGTTGGC
GTTGCAACTCTCGGATGGGTATGTGGACGGGACCCTCCCCACGATTGACA
CGGCTGAGGAGCGTGGCACGCACACCACAGCAGGCATGGGTGGTGTTGAG
GGTGAGGATCCACAGCGCAATCGGCTTGTCCCTCGGCAGCCAACGCCGCT
TAACTGAGGCGGGTTGGTTAGATGGCTGAGCCCGCCGTCCTGCAACATAG
TGCGTGTACGCCCTAATTGTTTGTGGGCAATTGTGTTGATGCAACCGCAA
CAGTGTTGATAGAAACACGTTCATCCTTAGCGCCATGGTGTTTGGCTTAA
CTTCGTGCAATGGGTACGTGGTTTACGAAACCATCCGCTCCACCTTGCCC
TGTTGAAGATAGTAGACGATCCCGAACGCTTTGTTTCCACCACCTTGATT
CTCGGTGCACCCAGCGCGCATTAGGTGTCTGGCCTTCCATTCATCCATGT
GTTTGGCGTATTTGCGGCAGCGAGTGAGATATTTCTTGGGGTGTTGTCGC
GACACCCATCGAACCCACCGTGAGCCCGATTACAAGGGCATTGCCACGGC
CTCACGCAACTGCAACGAGTTTTTATGTGGGATCAGTGTTCCAAGCCAAC
GGTGAGATATTGTGCTCCGACGGGGTACGGTGGGTTGTTTGCATTTCAGG
CGTGTGCGGATGGAACCAAGATATTGGCGCCTCGCCAGACTCTGCGACCG
AGGAAGCCGTCATGGACTGGTTTGTCGAAGAAGTGGCGGAATACGAGCCG
AATAACCTCGATGCAAGGAAAACGACTGCTGCCGTACAGGTATACGAAGG
CCTCTGAGCGTTCTATTGCCGTCGAACTCTTTGCGTCTCCAGTCCTGCGG
GTAGAAAATGATCACATCGACAGCAGCCATCGTGGACGTCGTATTTCTGC
CAGCTACGAGATCCTCACCGTTCTTTCTTTTCGCCGCCGTCCTTTCCAGG
CTGGGAGGAGGCTTGGGAAAAGGCACCTCCAGACTCTTCTAAAGGCGGTT
GGGCGGGGTTGTCTCCGCGGCACAAACACTCCTGACGAGAAGGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:599387..600484-

>mRNA_Ecto-sp6_S_contig92.18438.1 ID=mRNA_Ecto-sp6_S_contig92.18438.1|Name=mRNA_Ecto-sp6_S_contig92.18438.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:599387..600484- (Ectocarpus species6 EcLAC_371)
GACATCGCGCCCGACTCGACTGACTGTTGTTTGCTGGCGAGGACGTTGGC
GTTGCAACTCTCGGATGGGTATGTGGACGGGACCCTCCCCACGATTGACA
CGGCTGAGGAGCGTGGCACGCACACCACAGCAGGCATGGGTGGTGTTGAG
GGCGTGTGCGGATGGAACCAAGATATTGGCGCCTCGCCAGACTCTGCGAC
CGAGGAAGCCGTCATGGACTGGTTTGTCGAAGAAGTGGCGGAATACGAGC
CGAATAACCTCGATGCAAGGAAAACGACTGCTGCCGTACAGGCTGGGAGG
AGGCTTGGGAAAAGGCACCTCCAGACTCTTCTAAAGGCGGTTGGGCGGGG
TTGTCTCCGCGGCACAAACACTCCTGACGAGAAGGTATAG
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