mRNA_Ecto-sp6_S_contig92.18435.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18435.1
Unique NamemRNA_Ecto-sp6_S_contig92.18435.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI)

HSP 1 Score: 844 bits (2180), Expect = 2.170e-301
Identity = 442/477 (92.66%), Postives = 450/477 (94.34%), Query Frame = 2
Query:   44 METCNPPGFYVDPPAFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVSEASPAQKALTADARLLLLDGHGDRPSEAKHQRADLAGHFILKLACCGGKGGEEQPGTEANKRDGSSGRCEEVDRRSSRREWFVRAERDLFKARLHWHLQQNEGGGSKEGITGRCSGGTSSTDLGARASIADRLEALRLFYNLEWLQPVGPAAPDCSRKEKRRESGHEGSHAREGVCTSSYGGKGCGXXXXXXXXXXXXGRRRRDGDDPFREHSRLSTPGACSSSDASHVTLERQLPPSSKRKKLPESVAVKGGSDIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQ 1474
            METC PPG YVDPP FDIELEEFGTLPMRRLEAVRLLREGQTTPAQV EASPAQKALTADARLLLL GHGDRPSEAK+QRADLA HFILKLACCG  GG  QPGTEA+KRD SSGRCEEVDRRSSRREWFVRAERDLF+ARLHWHLQQNEGGGSKEGI GRC+GG SS DLGARASIADRLEALR+FYNLEWLQPVGPAAPDCSR EK+RESGHEGSHAREGVCTSSYGGKGC XXXXXXXXXXXX     DGDDPFREHSR  +PGACS  DASHVTLERQLPPSS+RKKLPESVA KGGSDIGYLSCPFEKVLPLVRSRRVLL DGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQ
Sbjct:    1 METCKPPGLYVDPPDFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVPEASPAQKALTADARLLLLHGHGDRPSEAKNQRADLASHFILKLACCGATGGGVQPGTEASKRDDSSGRCEEVDRRSSRREWFVRAERDLFEARLHWHLQQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSHAREGVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIGYLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQ 477          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A7S2DU63_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DU63_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.250e-34
Identity = 97/230 (42.17%), Postives = 130/230 (56.52%), Query Frame = 2
Query:  962 LSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLA--IAERGLPGVEADVRVAEV------LRQVRSAVDSLVSGGGRR--GLDADNRSMAI----ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            L  PF++ L LV  R V++  G AL+  DQ+P   V+ F   L + L   +  R L    AD    E       L ++  AV SLV    RR  G D D    A     ++ +N+D LA +HFPLC R T + LR++H LKY+AR+QL+ FL+  G+ VDE+L LWR EF + M  DEY +K+  YEYS+RHL GLEGKRK Y P SC +I   G   + +  YG  CP+
Sbjct:   66 LVVPFKQALRLVGQRCVVVRGGYALVPFDQIPALAVERFSNVLGQSLQSKLIIRLLAKERADTGQREADTCFSPLNELVDAVGSLV----RRMTGTDDDETGAASSSEEVSLRNLDLLAPRHFPLCARVTFKKLRQQHRLKYEARMQLVLFLKGVGLPVDEVLQLWRSEFRRVMTPDEYHKKK--YEYSIRHLYGLEGKRKDYSPYSCQQIIQKGPPRNSDHDYG--CPW 287          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A165H454_9APHY (DNA primase large subunit n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165H454_9APHY)

HSP 1 Score: 142 bits (359), Expect = 2.140e-32
Identity = 111/317 (35.02%), Postives = 153/317 (48.26%), Query Frame = 2
Query:  959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY-HSRPKQAGXXXXXXXXXXXXXSNNTSLRGMLVAQSLPAADIEDIIAPLESCGGAGAVGACRRHFSATHRWAAAGGGVWSTEGEGAQEA--SPNGWLAAS 1900
            Y    + +V  LV  RRVLL  G A +   +    V Q F+ RL + L +  + LP ++ D R+  +L  +       ++G       A + S   IT   ID LA KHFPLCMR     LRREHHLK+  RLQ   FL+  G+ +DE +  WR  F   M  D++ +   +Y Y++RH  GLEGKR  Y  +SC +I +    G+ +    HGCPY H  P                    T+L  M  AQ L AAD+ +I++ +++  G   V AC R F  TH    A  GV   EG G  E+   PN + A S
Sbjct:  189 YYKVKWTRVPDLVEKRRVLLKGGMAYVPSREQSSIVFQEFQTRLTKALEMTAKALPRLDEDTRIVPILDNLSQG---FLAGVSSEWSTATSSSAGEITADMIDDLARKHFPLCMRNLHETLRREHHLKHFGRLQYGLFLKVLGLSIDEAITFWRRSF-SNMQDDKFNK---EYRYNIRHSYGLEGKRANYPAKSCQQILTADQPGAADS---HGCPYRHFSPDNL----------------QTALLSMYSAQGLTAADLPEIMSTVKA--GHYHV-ACTRVFEITH----ASVGVKKGEGIGGGESVTHPNQYAAKS 472          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A2L2YIM2_PARTP (DNA primase large subunit n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YIM2_PARTP)

HSP 1 Score: 133 bits (335), Expect = 3.500e-29
Identity = 80/220 (36.36%), Postives = 114/220 (51.82%), Query Frame = 2
Query:  959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAI---ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            +   PF +VL L+++R+V L  G A +  + L   VV  +   L   LA+  R LP +E D R+  +L  +              G D  N+  +    IT   ID L++  FPLCMR     LR+ HHLKY  RLQ   FL+  G+ +D+ L  WREEF K M +D++ +   QY Y++R+  G EGKR  + P SC +I +    G GE    HGCP+
Sbjct:  191 FYKVPFTEVLDLIKNRKVYLERGLAYIPEEDLVVTVVSAYRAHLSHALAVTSRALPQLEEDTRLISMLSTLHQRYI---------GTDYSNKKASFTGEITPDQIDNLSKVAFPLCMRNLHETLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDSDKFDK---QYTYNIRYNYGKEGKRANFSPYSCVKIITSNAPGPGEH---HGCPF 395          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A8K1FD44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD44_PYTOL)

HSP 1 Score: 132 bits (331), Expect = 3.570e-29
Identity = 89/227 (39.21%), Postives = 119/227 (52.42%), Query Frame = 2
Query:  932 AVKGGSDIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADV-RVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            AV  GS   Y   PF +   LV  R VLL +G A ++ + L E  V HF+  LR  L    R LP  +AD+ R++  L ++ +   SL     R  L   N+    +T +NIDQ+AEKHFPLCM+   R  R  HHLKY  R+Q   FL+  G  V E +  +R+EF K +P   + R   +Y Y +RH  GLEG RK Y P  C +I     G +   G  HGCP+
Sbjct:  138 AVDQGSS-RYFRVPFHEAARLVARRHVLLVNGFAWINENALKEIAVHHFKQILRAQLTALRRSLPAKKADMERLSPTLDKLLAESQSLHPA--RSILQPKNQLR--VTPENIDQVAEKHFPLCMKHLHRKFRANHHLKYDGRVQYRMFLKGLGFSVHESMMFFRDEFTKVLPQVRFDR---EYAYHIRHSYGLEGSRKDYAPLDCQQIIQ---GSAPRHGQHHGCPF 353          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A4Y2B4J4_ARAVE (DNA primase large subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B4J4_ARAVE)

HSP 1 Score: 132 bits (331), Expect = 1.070e-28
Identity = 81/220 (36.82%), Postives = 113/220 (51.36%), Query Frame = 2
Query:  959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRS---MAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            +   PF +VL LV++R+V L  G A +  D L   V+  +   L   LAI  R LP +E D R+  +L  +              G D  N+    +  +T   ID L++  FPLCMR     LR+ HHLKY  RLQ   FL+  G+ +D+ L  WREEF K M  D++ +   QY Y++R+  G EGKR  + P SC +I +    G GE    HGCP+
Sbjct:  190 FYKVPFIEVLDLVKNRKVFLEKGYAYIPEDDLVITVLSAYRAHLSHALAITSRALPQLEEDTRLISMLSTLHQRYI---------GTDYTNKKPNFIGDVTPDQIDSLSKTSFPLCMRNLHDTLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDVDKFDK---QYTYNIRYNYGKEGKRANFSPYSCMKIITSNAPGPGEH---HGCPF 394          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A2I0AQK8_9ASPA (DNA primase large subunit n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AQK8_9ASPA)

HSP 1 Score: 130 bits (326), Expect = 2.780e-28
Identity = 82/223 (36.77%), Postives = 112/223 (50.22%), Query Frame = 2
Query:  950 DIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADN---RSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            D  +   PFE+V  LV SRRV L  G A ++ +Q    VV HF   L + L +  R           + +  Q +  +  +V       L  D       A IT K+IDQLA   FPLCMR     LR +HHLK++ R+QL  FL+  G+++D+ L  WR EF + +  D + +   +Y YS+RH  G EGKR  Y P SC +I S     +   G  HGCPY
Sbjct:  166 DTTFFKVPFEEVPELVGSRRVFLLKGNAYVAMNQAVSIVVSHFRSNLSKALVLTNRKW--------TSTIREQEKDRLTPIVEALSSSYLGPDYSLPNEFAAITLKDIDQLANSSFPLCMRHLFYKLREDHHLKHRGRMQLGLFLKGVGLKLDDALAFWRTEFSQKVGNDRFDK---EYAYSIRHNYGKEGKRTDYTPYSCQKIISS----TASVGDHHGCPY 373          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: J4GP97_9APHY (DNA primase large subunit n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4GP97_9APHY)

HSP 1 Score: 129 bits (324), Expect = 6.320e-28
Identity = 103/318 (32.39%), Postives = 150/318 (47.17%), Query Frame = 2
Query:  959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPYHSRPKQAGXXXXXXXXXXXXXSNN--TSLRGMLVAQSLPAADIEDIIAPLESCGGAGAVGACRRHFSATHRWAAAGGGVWSTEGEGAQEA--SPNGWLAAS 1900
            Y    + +V  LV  RRV+L  G A +   +    V Q F+  L + L +  + LP ++ D R+  +L  +     + VS         +      IT + +D+LA KHFP+CMR     LRR+ HLK+  RLQ   FL+  G+ +DE +  WR  F   +  D++ +   +Y Y++RH  GLEGKR  Y  +SC +I +     +G+    HGCPY                     S+N  T+L  M  +Q L AAD+  I+  ++S  G   V AC R F  TH       GV   EG GA E+   PN + A S
Sbjct:  186 YYKVKWTRVPDLVEKRRVILKRGFAYVPSRETSSIVFQEFQSSLTQALEMTAKALPQLDEDTRIVPILNHLSQGFLAGVSSEWSTATSGNGNE---ITAEMVDELAHKHFPMCMRNLHDNLRRDRHLKHFGRLQYGLFLKVLGLSIDEAIAFWRRSF-SNIQDDKFNK---EYRYNIRHSYGLEGKRANYAAKSCQQILTADQPSTGDS---HGCPYRH-----------------FSSDNLQTALLSMYSSQGLSAADLPGILQNVKS--GHYHV-ACTRVFEITH----GSKGVKKGEGVGAGESVTHPNQYAARS 469          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A087SZT7_STEMI (DNA primase large subunit (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087SZT7_STEMI)

HSP 1 Score: 129 bits (323), Expect = 7.390e-28
Identity = 79/222 (35.59%), Postives = 114/222 (51.35%), Query Frame = 2
Query:  953 IGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAI---ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            I +   PF +VL L+++R+V L  G A +  D +   +   +   L   LAI  R LP +E D R+  +L  +              G D  NR +     IT + ID L++  FPLCM+     LRR HHLKY  RLQ   FL+  G+ +++ L  WR+EF K M  D++ +   QY Y++R+  G EGKR  + P SC +I +    G GE    HGCP+
Sbjct:  187 IDFYKVPFVEVLDLIKNRKVFLKKGFAYIPEDDMVITIASAYRAHLSHSLAITSRALPQLEEDTRLISMLSTLHQRYI---------GTDYSNRKVDYAGDITPEFIDGLSKTSFPLCMQNLHETLRRNHHLKYNGRLQYGLFLKGIGLTLEDALRFWRQEFTKIMDNDKFDK---QYAYNIRYNYGKEGKRANFSPYSCVKIITTNAPGPGEF---HGCPF 393          
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A662YH99_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH99_9STRA)

HSP 1 Score: 127 bits (318), Expect = 8.540e-28
Identity = 81/215 (37.67%), Postives = 113/215 (52.56%), Query Frame = 2
Query:  971 PFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLP--GVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
            PF +V  LVR RRV++  G  L+   ++  A + HF+  L++ L   +  +P  G E D R+  VL    +   SLV   G R        +A      IDQ+AEKHFPLCM++    LR  HHLKY  R+Q   FL+  G  V E L  +R EF K +P  ++ +   +Y Y +RH  GLEG R+ Y P SC +I +   G +   G  HGCP+
Sbjct:   95 PFHEVSALVRQRRVVVRKGCCLIPSHEMDYAALHHFKRSLKQQLGDLQCAIPALGPELD-RLTPVLDGFLAKAHSLVGSSGSRSRTRPRLEVA-----GIDQVAEKHFPLCMKQLHHKLRENHHLKYDGRVQYRLFLKGVGFSVYETLQFFRTEFTKKIPPAKFEK---EYAYHIRHSYGLEGSRRDYAPLSCEQIIN---GSAPSHGQYHGCPF 297          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU99_ECTSI2.170e-30192.66Similar to DNA primase large subunit, partial n=2 ... [more]
A0A7S2DU63_9STRA7.250e-3442.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A165H454_9APHY2.140e-3235.02DNA primase large subunit n=1 Tax=Laetiporus sulph... [more]
A0A2L2YIM2_PARTP3.500e-2936.36DNA primase large subunit n=2 Tax=Parasteatoda tep... [more]
A0A8K1FD44_PYTOL3.570e-2939.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4Y2B4J4_ARAVE1.070e-2836.82DNA primase large subunit n=1 Tax=Araneus ventrico... [more]
A0A2I0AQK8_9ASPA2.780e-2836.77DNA primase large subunit n=1 Tax=Apostasia shenzh... [more]
J4GP97_9APHY6.320e-2832.39DNA primase large subunit n=1 Tax=Fibroporia radic... [more]
A0A087SZT7_STEMI7.390e-2835.59DNA primase large subunit (Fragment) n=2 Tax=Stego... [more]
A0A662YH99_9STRA8.540e-2837.67Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:548756..552514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score851.7
Seed ortholog evalue2.3e-244
Seed eggNOG ortholog2880.D7FU99
Model size2510
KEGG rclassRC02795
KEGG koko:K02685
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.DNA primase activity
EggNOG OGsCOG2219@1,KOG2267@2759
Ec32 ortholog descriptionDNA primase large subunit, eukaryotic/archaeal
Ec32 orthologEc-18_001420.1
Cds size1971
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18435.1prot_Ecto-sp6_S_contig92.18435.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 548799..552018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350564.1703272-UTR-Ecto-sp6_S_contig92:548755..5487981682350564.1703272-UTR-Ecto-sp6_S_contig92:548755..548798Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 548756..548798 +
1682350564.2278094-UTR-Ecto-sp6_S_contig92:552018..5525141682350564.2278094-UTR-Ecto-sp6_S_contig92:552018..552514Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 552019..552514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350564.1868052-CDS-Ecto-sp6_S_contig92:548798..5489761682350564.1868052-CDS-Ecto-sp6_S_contig92:548798..548976Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 548799..548976 +
1682350564.198508-CDS-Ecto-sp6_S_contig92:549344..5505161682350564.198508-CDS-Ecto-sp6_S_contig92:549344..550516Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 549345..550516 +
1682350564.20791-CDS-Ecto-sp6_S_contig92:550851..5509311682350564.20791-CDS-Ecto-sp6_S_contig92:550851..550931Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 550852..550931 +
1682350564.2177677-CDS-Ecto-sp6_S_contig92:551477..5520181682350564.2177677-CDS-Ecto-sp6_S_contig92:551477..552018Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 551478..552018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18435.1

>prot_Ecto-sp6_S_contig92.18435.1 ID=prot_Ecto-sp6_S_contig92.18435.1|Name=mRNA_Ecto-sp6_S_contig92.18435.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=657bp
METCNPPGFYVDPPAFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVSEA
SPAQKALTADARLLLLDGHGDRPSEAKHQRADLAGHFILKLACCGGKGGE
EQPGTEANKRDGSSGRCEEVDRRSSRREWFVRAERDLFKARLHWHLQQNE
GGGSKEGITGRCSGGTSSTDLGARASIADRLEALRLFYNLEWLQPVGPAA
PDCSRKEKRRESGHEGSHAREGVCTSSYGGKGCGGGGGSGSGGDDAGRRR
RDGDDPFREHSRLSTPGACSSSDASHVTLERQLPPSSKRKKLPESVAVKG
GSDIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLR
EGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMA
IITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGME
VDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSC
ARIASVGWGGSGEGGYGHGCPYHSRPKQAGGGGSGGGQSTAGGSNNTSLR
GMLVAQSLPAADIEDIIAPLESCGGAGAVGACRRHFSATHRWAAAGGGVW
STEGEGAQEASPNGWLAASTRSNQHQPRQQQQQRQQPQQQQPVGKGEFLT
QEGQGV*
back to top

mRNA from alignment at Ecto-sp6_S_contig92:548756..552514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18435.1 ID=mRNA_Ecto-sp6_S_contig92.18435.1|Name=mRNA_Ecto-sp6_S_contig92.18435.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3759bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:548756..552514+ (Ectocarpus species6 EcLAC_371)
CCTGGCTCTATCCACGCTTCTCGTTTCCGGATCTGCTGTTGTGATGGAGA CGTGCAACCCTCCAGGGTTCTATGTCGATCCGCCTGCTTTCGACATCGAA CTGGAGGAGTTCGGCACGTTGCCAATGCGTAGGCTAGAGGCCGTTCGACT TTTACGTGAGGGACAAACAACGCCGGCGCAGGTGTCGGAGGCGAGCCCGG CGCAAAAAGCGCTAACGGCCGGTGAGTCGTGTCTGGCTACACAAGCTGAA CGACTTTTGCGTTTGTCGAGACAGCTATGCTTATAGGGCATTCGCCTGGG GGTCGTGCTTTTTGTGGCCTCTAGCAACAAGTTGCCAATCTCGGTACATG CTTCATGAACGGAGACTGTGTCCGTGGCTGGCTCTATTGCTGCGACACCG CTGAGGGCGTCGTTGAGACTTAAACTAAGGGTCTTTGCGAAGACCGACTT CATGTTATGAGGTGTGAACGTTGCATTGCAAGCTCGCAAGATCACTTCCT AGTATTACAACATTACGTATTCGTTTAGCACTGTAAAGCGCTATGACTGT CCCAAACTTCGATTTTTTCTCTGTACGAACCCACGCTAGATGCTAGGCTG CTTCTCCTCGACGGGCACGGCGATCGGCCCTCAGAGGCCAAGCATCAACG TGCAGACCTCGCGGGCCACTTCATACTGAAGCTAGCGTGCTGTGGTGGAA AAGGCGGAGAAGAACAGCCGGGAACCGAAGCCAACAAGAGGGACGGCAGC AGTGGTCGGTGCGAGGAAGTTGACCGGAGGAGCAGCAGGCGGGAATGGTT CGTTCGCGCAGAGAGGGACTTGTTTAAAGCTCGTCTCCACTGGCATCTCC AGCAAAACGAGGGGGGGGGCAGCAAGGAAGGAATCACGGGGCGATGTAGC GGAGGAACAAGTAGCACCGATCTGGGGGCACGTGCGAGTATTGCCGACCG TTTGGAGGCCCTGAGATTGTTTTATAACCTGGAATGGCTGCAGCCGGTTG GACCGGCAGCTCCGGATTGCAGCCGCAAGGAGAAGCGGAGAGAAAGTGGG CACGAGGGTTCTCATGCGAGGGAAGGCGTTTGCACCAGCAGTTACGGTGG TAAAGGATGTGGCGGCGGTGGTGGGAGTGGAAGCGGTGGAGATGACGCCG GGAGAAGGCGACGAGACGGGGATGACCCCTTCCGAGAGCACTCCCGCTTA TCTACTCCTGGCGCGTGTTCAAGTAGCGATGCAAGTCACGTGACTCTTGA GCGACAGCTCCCTCCTTCGTCAAAGAGGAAGAAGCTACCCGAATCCGTTG CCGTCAAAGGTGGTAGCGACATCGGTTACCTATCGTGCCCGTTCGAGAAA GTTCTTCCGCTTGTCCGATCCCGCCGGGTATTGCTTGGGGACGGGAAGGC GCTACTCTCGCCAGATCAACTTCCTGAGGCAGTGGTACAGCACTTTGAAG GGCGTCTTAGGGAGGGACTCGCCATCGCGGAGCGCGGCTTGCCCGGGGTC GAGGCGGACGTTAGGGTGGCAGAGGTTTTGAGACAGGTCAGGAGTGCAGT GGATTCCTTGGTTAGCGGCGGCGGGCGGCGTGGCCTTGACGCAGACAACC GATCGATGGCCATAATCACCCGGAAAAACATCGACCAGCTTGCCGAGAAG CACTTCCCGCTCTGCATGCGGAGAACGCTTCGCATCCTTCGACGTGAGCA CCACCTCAAGTATCAGGCGCGCCTGCAGCTCATCAGCTTCCTCAGGAACG CCGGGATGGAGGTGCGGGCCAGCGTCGAAGGCTGCAAGCTTGATTACGAT ACATGTGGCACCGCGCCTTACCCAAGCCACCTTTCTCCCTGCGCTCCGCG CCGTGCGTCGAACCTCGTCGGTGGGACGCATAAGTGCAAGGTCGACGCTT CTTGTGCTAGTGTCTGTCGTACAGTATTCTGTTTGGAAAGAGGAATGATT CCCTGATGGGTCGCTCAGCGCAACCAAAGAACGAATGATCGCGGATGGAA CCTCAGGAACCCATCTTGTTCATTCCTCTAGCTCCTTTTGCAACCTTGCA CGATGTCTACGTTGCTGCTTTGCTTTGTCGTACGTGGCTTCGGCAGGTTG ATGAGATTCTGGGTCTTTGGCGGGAGGAGTTCCCGAAAGGCATGCCGGCG GACGAGTATGCTCGCAAGAGAAACCAGCTAAGCGCACTCTGACTTGGTGT ACTTTTGGGAGAACGGGTAGATTAAGCGGAAACCACGCGTGATTGATATG CAGGTCGTACAGCTTCGTTCTACTGATTCTGGAACCCTTTGGTAGTATGG GCGGCTCAGCAATTCACCCTCACAAATAGCAGGCCGATGTAGCGCTATCA ACGTATATTGTGGGATTGAAGTTGTTTTTCTGTACCTCAGACGTTTGGAA ACAGGAGGTGCTGGACGGAGGCCACCACATTTTTTTTCCACATTCACACG GCAATAACAATGGGAGATATTGAAGAACGTTTCAGCTTGAATGTACTGGC GCCGGGAGCACTTTTGCTCCGCACTCCCAGCACGGGAGACGACGCTTGGC ACTTAATAATTATTCGTTTCTGTTGTCCGGGTGCGTTGATGTATGTCCTG CGGATAACACGTGGTCTAGGAGGACGTAGCACCTATCTCGTGGGTTTGAT TGCATATCGAACGTTTAGTAGGAGGCTAACGCGTTGCCCGCCCTCCCCAA ACTGTTTTCCGTTCCGTTCCAGATACGAATATAGTCTTCGACACCTGTGT GGCCTGGAGGGAAAGCGCAAGGCATACCGCCCTCAGTCCTGCGCCCGAAT CGCCTCCGTGGGATGGGGTGGCTCGGGCGAAGGGGGCTACGGCCACGGCT GCCCGTACCACTCTCGCCCGAAACAGGCAGGTGGCGGCGGCAGCGGTGGC GGGCAATCAACGGCCGGTGGCTCGAACAACACCAGCCTTCGAGGTATGCT AGTGGCTCAAAGTCTTCCTGCAGCAGATATTGAAGACATCATCGCCCCTC TGGAAAGCTGTGGGGGGGCAGGGGCGGTGGGGGCATGTCGAAGACACTTT TCGGCGACACACCGTTGGGCGGCGGCTGGCGGCGGCGTGTGGAGCACGGA GGGCGAAGGGGCTCAGGAGGCAAGTCCAAACGGGTGGCTAGCGGCATCGA CAAGGTCAAACCAACATCAGCCGCGGCAGCAGCAGCAACAACGACAACAA CCACAGCAGCAGCAGCCGGTGGGAAAGGGAGAGTTTCTAACGCAGGAGGG CCAGGGTGTTTAGGCTAATAGATTTACCTCACGTCCTTGTCAACGAGTTA CCAACAATTGGCTGGGAAGGCCGCATGTCTTGTTCGGTCTAAGCCGCAGG CACTTTGTCGGAGGATGTAAAAAAGGACGACTTCCCCCCAGTTGTACAAC AATGGTGGTGCAGCCTCATAAGATTGTGCGACGAGCGGATGCTTCCTGCT GCTACTATCGTTTCGTTGTGGATATATTCCTCCTAACGCGGAATTCCCAG CACATACTCGCCACATTGCCAAATTGTTGGTTGCAGCGGTAGGGGGATGG ACTCCGTTGTTTTTTCAGTTTAAACGCTAGTAGAATGTGAAAACCCTTCG AGAATGAACGGCATGCCCGAATTCTACACGGTCATACGCTCGCACTTGGC TCCGAAGAAGCTACAAAAGGTCCAGCTTGCGTCGGGCTCAAACCTTGGTT GACCACAAATCTCAAGCTCAGGCTTCAGCAGCGGATTTAGCGCAGGATCC ACCGCGAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:548756..552514+

>mRNA_Ecto-sp6_S_contig92.18435.1 ID=mRNA_Ecto-sp6_S_contig92.18435.1|Name=mRNA_Ecto-sp6_S_contig92.18435.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1971bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:548756..552514+ (Ectocarpus species6 EcLAC_371)
ATGGAGACGTGCAACCCTCCAGGGTTCTATGTCGATCCGCCTGCTTTCGA
CATCGAACTGGAGGAGTTCGGCACGTTGCCAATGCGTAGGCTAGAGGCCG
TTCGACTTTTACGTGAGGGACAAACAACGCCGGCGCAGGTGTCGGAGGCG
AGCCCGGCGCAAAAAGCGCTAACGGCCGATGCTAGGCTGCTTCTCCTCGA
CGGGCACGGCGATCGGCCCTCAGAGGCCAAGCATCAACGTGCAGACCTCG
CGGGCCACTTCATACTGAAGCTAGCGTGCTGTGGTGGAAAAGGCGGAGAA
GAACAGCCGGGAACCGAAGCCAACAAGAGGGACGGCAGCAGTGGTCGGTG
CGAGGAAGTTGACCGGAGGAGCAGCAGGCGGGAATGGTTCGTTCGCGCAG
AGAGGGACTTGTTTAAAGCTCGTCTCCACTGGCATCTCCAGCAAAACGAG
GGGGGGGGCAGCAAGGAAGGAATCACGGGGCGATGTAGCGGAGGAACAAG
TAGCACCGATCTGGGGGCACGTGCGAGTATTGCCGACCGTTTGGAGGCCC
TGAGATTGTTTTATAACCTGGAATGGCTGCAGCCGGTTGGACCGGCAGCT
CCGGATTGCAGCCGCAAGGAGAAGCGGAGAGAAAGTGGGCACGAGGGTTC
TCATGCGAGGGAAGGCGTTTGCACCAGCAGTTACGGTGGTAAAGGATGTG
GCGGCGGTGGTGGGAGTGGAAGCGGTGGAGATGACGCCGGGAGAAGGCGA
CGAGACGGGGATGACCCCTTCCGAGAGCACTCCCGCTTATCTACTCCTGG
CGCGTGTTCAAGTAGCGATGCAAGTCACGTGACTCTTGAGCGACAGCTCC
CTCCTTCGTCAAAGAGGAAGAAGCTACCCGAATCCGTTGCCGTCAAAGGT
GGTAGCGACATCGGTTACCTATCGTGCCCGTTCGAGAAAGTTCTTCCGCT
TGTCCGATCCCGCCGGGTATTGCTTGGGGACGGGAAGGCGCTACTCTCGC
CAGATCAACTTCCTGAGGCAGTGGTACAGCACTTTGAAGGGCGTCTTAGG
GAGGGACTCGCCATCGCGGAGCGCGGCTTGCCCGGGGTCGAGGCGGACGT
TAGGGTGGCAGAGGTTTTGAGACAGGTCAGGAGTGCAGTGGATTCCTTGG
TTAGCGGCGGCGGGCGGCGTGGCCTTGACGCAGACAACCGATCGATGGCC
ATAATCACCCGGAAAAACATCGACCAGCTTGCCGAGAAGCACTTCCCGCT
CTGCATGCGGAGAACGCTTCGCATCCTTCGACGTGAGCACCACCTCAAGT
ATCAGGCGCGCCTGCAGCTCATCAGCTTCCTCAGGAACGCCGGGATGGAG
GTTGATGAGATTCTGGGTCTTTGGCGGGAGGAGTTCCCGAAAGGCATGCC
GGCGGACGAGTATGCTCGCAAGAGAAACCAATACGAATATAGTCTTCGAC
ACCTGTGTGGCCTGGAGGGAAAGCGCAAGGCATACCGCCCTCAGTCCTGC
GCCCGAATCGCCTCCGTGGGATGGGGTGGCTCGGGCGAAGGGGGCTACGG
CCACGGCTGCCCGTACCACTCTCGCCCGAAACAGGCAGGTGGCGGCGGCA
GCGGTGGCGGGCAATCAACGGCCGGTGGCTCGAACAACACCAGCCTTCGA
GGTATGCTAGTGGCTCAAAGTCTTCCTGCAGCAGATATTGAAGACATCAT
CGCCCCTCTGGAAAGCTGTGGGGGGGCAGGGGCGGTGGGGGCATGTCGAA
GACACTTTTCGGCGACACACCGTTGGGCGGCGGCTGGCGGCGGCGTGTGG
AGCACGGAGGGCGAAGGGGCTCAGGAGGCAAGTCCAAACGGGTGGCTAGC
GGCATCGACAAGGTCAAACCAACATCAGCCGCGGCAGCAGCAGCAACAAC
GACAACAACCACAGCAGCAGCAGCCGGTGGGAAAGGGAGAGTTTCTAACG
CAGGAGGGCCAGGGTGTTTAG
back to top