mRNA_Ecto-sp6_S_contig92.18435.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI) HSP 1 Score: 844 bits (2180), Expect = 2.170e-301 Identity = 442/477 (92.66%), Postives = 450/477 (94.34%), Query Frame = 2
Query: 44 METCNPPGFYVDPPAFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVSEASPAQKALTADARLLLLDGHGDRPSEAKHQRADLAGHFILKLACCGGKGGEEQPGTEANKRDGSSGRCEEVDRRSSRREWFVRAERDLFKARLHWHLQQNEGGGSKEGITGRCSGGTSSTDLGARASIADRLEALRLFYNLEWLQPVGPAAPDCSRKEKRRESGHEGSHAREGVCTSSYGGKGCGXXXXXXXXXXXXGRRRRDGDDPFREHSRLSTPGACSSSDASHVTLERQLPPSSKRKKLPESVAVKGGSDIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQ 1474
METC PPG YVDPP FDIELEEFGTLPMRRLEAVRLLREGQTTPAQV EASPAQKALTADARLLLL GHGDRPSEAK+QRADLA HFILKLACCG GG QPGTEA+KRD SSGRCEEVDRRSSRREWFVRAERDLF+ARLHWHLQQNEGGGSKEGI GRC+GG SS DLGARASIADRLEALR+FYNLEWLQPVGPAAPDCSR EK+RESGHEGSHAREGVCTSSYGGKGC XXXXXXXXXXXX DGDDPFREHSR +PGACS DASHVTLERQLPPSS+RKKLPESVA KGGSDIGYLSCPFEKVLPLVRSRRVLL DGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQ
Sbjct: 1 METCKPPGLYVDPPDFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVPEASPAQKALTADARLLLLHGHGDRPSEAKNQRADLASHFILKLACCGATGGGVQPGTEASKRDDSSGRCEEVDRRSSRREWFVRAERDLFEARLHWHLQQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSHAREGVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIGYLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQ 477
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A7S2DU63_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DU63_9STRA) HSP 1 Score: 144 bits (363), Expect = 7.250e-34 Identity = 97/230 (42.17%), Postives = 130/230 (56.52%), Query Frame = 2
Query: 962 LSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLA--IAERGLPGVEADVRVAEV------LRQVRSAVDSLVSGGGRR--GLDADNRSMAI----ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
L PF++ L LV R V++ G AL+ DQ+P V+ F L + L + R L AD E L ++ AV SLV RR G D D A ++ +N+D LA +HFPLC R T + LR++H LKY+AR+QL+ FL+ G+ VDE+L LWR EF + M DEY +K+ YEYS+RHL GLEGKRK Y P SC +I G + + YG CP+
Sbjct: 66 LVVPFKQALRLVGQRCVVVRGGYALVPFDQIPALAVERFSNVLGQSLQSKLIIRLLAKERADTGQREADTCFSPLNELVDAVGSLV----RRMTGTDDDETGAASSSEEVSLRNLDLLAPRHFPLCARVTFKKLRQQHRLKYEARMQLVLFLKGVGLPVDEVLQLWRSEFRRVMTPDEYHKKK--YEYSIRHLYGLEGKRKDYSPYSCQQIIQKGPPRNSDHDYG--CPW 287
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A165H454_9APHY (DNA primase large subunit n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165H454_9APHY) HSP 1 Score: 142 bits (359), Expect = 2.140e-32 Identity = 111/317 (35.02%), Postives = 153/317 (48.26%), Query Frame = 2
Query: 959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY-HSRPKQAGXXXXXXXXXXXXXSNNTSLRGMLVAQSLPAADIEDIIAPLESCGGAGAVGACRRHFSATHRWAAAGGGVWSTEGEGAQEA--SPNGWLAAS 1900
Y + +V LV RRVLL G A + + V Q F+ RL + L + + LP ++ D R+ +L + ++G A + S IT ID LA KHFPLCMR LRREHHLK+ RLQ FL+ G+ +DE + WR F M D++ + +Y Y++RH GLEGKR Y +SC +I + G+ + HGCPY H P T+L M AQ L AAD+ +I++ +++ G V AC R F TH A GV EG G E+ PN + A S
Sbjct: 189 YYKVKWTRVPDLVEKRRVLLKGGMAYVPSREQSSIVFQEFQTRLTKALEMTAKALPRLDEDTRIVPILDNLSQG---FLAGVSSEWSTATSSSAGEITADMIDDLARKHFPLCMRNLHETLRREHHLKHFGRLQYGLFLKVLGLSIDEAITFWRRSF-SNMQDDKFNK---EYRYNIRHSYGLEGKRANYPAKSCQQILTADQPGAADS---HGCPYRHFSPDNL----------------QTALLSMYSAQGLTAADLPEIMSTVKA--GHYHV-ACTRVFEITH----ASVGVKKGEGIGGGESVTHPNQYAAKS 472
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A2L2YIM2_PARTP (DNA primase large subunit n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YIM2_PARTP) HSP 1 Score: 133 bits (335), Expect = 3.500e-29 Identity = 80/220 (36.36%), Postives = 114/220 (51.82%), Query Frame = 2
Query: 959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAI---ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
+ PF +VL L+++R+V L G A + + L VV + L LA+ R LP +E D R+ +L + G D N+ + IT ID L++ FPLCMR LR+ HHLKY RLQ FL+ G+ +D+ L WREEF K M +D++ + QY Y++R+ G EGKR + P SC +I + G GE HGCP+
Sbjct: 191 FYKVPFTEVLDLIKNRKVYLERGLAYIPEEDLVVTVVSAYRAHLSHALAVTSRALPQLEEDTRLISMLSTLHQRYI---------GTDYSNKKASFTGEITPDQIDNLSKVAFPLCMRNLHETLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDSDKFDK---QYTYNIRYNYGKEGKRANFSPYSCVKIITSNAPGPGEH---HGCPF 395
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A8K1FD44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD44_PYTOL) HSP 1 Score: 132 bits (331), Expect = 3.570e-29 Identity = 89/227 (39.21%), Postives = 119/227 (52.42%), Query Frame = 2
Query: 932 AVKGGSDIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADV-RVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
AV GS Y PF + LV R VLL +G A ++ + L E V HF+ LR L R LP +AD+ R++ L ++ + SL R L N+ +T +NIDQ+AEKHFPLCM+ R R HHLKY R+Q FL+ G V E + +R+EF K +P + R +Y Y +RH GLEG RK Y P C +I G + G HGCP+
Sbjct: 138 AVDQGSS-RYFRVPFHEAARLVARRHVLLVNGFAWINENALKEIAVHHFKQILRAQLTALRRSLPAKKADMERLSPTLDKLLAESQSLHPA--RSILQPKNQLR--VTPENIDQVAEKHFPLCMKHLHRKFRANHHLKYDGRVQYRMFLKGLGFSVHESMMFFRDEFTKVLPQVRFDR---EYAYHIRHSYGLEGSRKDYAPLDCQQIIQ---GSAPRHGQHHGCPF 353
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A4Y2B4J4_ARAVE (DNA primase large subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B4J4_ARAVE) HSP 1 Score: 132 bits (331), Expect = 1.070e-28 Identity = 81/220 (36.82%), Postives = 113/220 (51.36%), Query Frame = 2
Query: 959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRS---MAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
+ PF +VL LV++R+V L G A + D L V+ + L LAI R LP +E D R+ +L + G D N+ + +T ID L++ FPLCMR LR+ HHLKY RLQ FL+ G+ +D+ L WREEF K M D++ + QY Y++R+ G EGKR + P SC +I + G GE HGCP+
Sbjct: 190 FYKVPFIEVLDLVKNRKVFLEKGYAYIPEDDLVITVLSAYRAHLSHALAITSRALPQLEEDTRLISMLSTLHQRYI---------GTDYTNKKPNFIGDVTPDQIDSLSKTSFPLCMRNLHDTLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDVDKFDK---QYTYNIRYNYGKEGKRANFSPYSCMKIITSNAPGPGEH---HGCPF 394
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A2I0AQK8_9ASPA (DNA primase large subunit n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AQK8_9ASPA) HSP 1 Score: 130 bits (326), Expect = 2.780e-28 Identity = 82/223 (36.77%), Postives = 112/223 (50.22%), Query Frame = 2
Query: 950 DIGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADN---RSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
D + PFE+V LV SRRV L G A ++ +Q VV HF L + L + R + + Q + + +V L D A IT K+IDQLA FPLCMR LR +HHLK++ R+QL FL+ G+++D+ L WR EF + + D + + +Y YS+RH G EGKR Y P SC +I S + G HGCPY
Sbjct: 166 DTTFFKVPFEEVPELVGSRRVFLLKGNAYVAMNQAVSIVVSHFRSNLSKALVLTNRKW--------TSTIREQEKDRLTPIVEALSSSYLGPDYSLPNEFAAITLKDIDQLANSSFPLCMRHLFYKLREDHHLKHRGRMQLGLFLKGVGLKLDDALAFWRTEFSQKVGNDRFDK---EYAYSIRHNYGKEGKRTDYTPYSCQKIISS----TASVGDHHGCPY 373
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: J4GP97_9APHY (DNA primase large subunit n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4GP97_9APHY) HSP 1 Score: 129 bits (324), Expect = 6.320e-28 Identity = 103/318 (32.39%), Postives = 150/318 (47.17%), Query Frame = 2
Query: 959 YLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPYHSRPKQAGXXXXXXXXXXXXXSNN--TSLRGMLVAQSLPAADIEDIIAPLESCGGAGAVGACRRHFSATHRWAAAGGGVWSTEGEGAQEA--SPNGWLAAS 1900
Y + +V LV RRV+L G A + + V Q F+ L + L + + LP ++ D R+ +L + + VS + IT + +D+LA KHFP+CMR LRR+ HLK+ RLQ FL+ G+ +DE + WR F + D++ + +Y Y++RH GLEGKR Y +SC +I + +G+ HGCPY S+N T+L M +Q L AAD+ I+ ++S G V AC R F TH GV EG GA E+ PN + A S
Sbjct: 186 YYKVKWTRVPDLVEKRRVILKRGFAYVPSRETSSIVFQEFQSSLTQALEMTAKALPQLDEDTRIVPILNHLSQGFLAGVSSEWSTATSGNGNE---ITAEMVDELAHKHFPMCMRNLHDNLRRDRHLKHFGRLQYGLFLKVLGLSIDEAIAFWRRSF-SNIQDDKFNK---EYRYNIRHSYGLEGKRANYAAKSCQQILTADQPSTGDS---HGCPYRH-----------------FSSDNLQTALLSMYSSQGLSAADLPGILQNVKS--GHYHV-ACTRVFEITH----GSKGVKKGEGVGAGESVTHPNQYAARS 469
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A087SZT7_STEMI (DNA primase large subunit (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087SZT7_STEMI) HSP 1 Score: 129 bits (323), Expect = 7.390e-28 Identity = 79/222 (35.59%), Postives = 114/222 (51.35%), Query Frame = 2
Query: 953 IGYLSCPFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAI---ITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
I + PF +VL L+++R+V L G A + D + + + L LAI R LP +E D R+ +L + G D NR + IT + ID L++ FPLCM+ LRR HHLKY RLQ FL+ G+ +++ L WR+EF K M D++ + QY Y++R+ G EGKR + P SC +I + G GE HGCP+
Sbjct: 187 IDFYKVPFVEVLDLIKNRKVFLKKGFAYIPEDDMVITIASAYRAHLSHSLAITSRALPQLEEDTRLISMLSTLHQRYI---------GTDYSNRKVDYAGDITPEFIDGLSKTSFPLCMQNLHETLRRNHHLKYNGRLQYGLFLKGIGLTLEDALRFWRQEFTKIMDNDKFDK---QYAYNIRYNYGKEGKRANFSPYSCVKIITTNAPGPGEF---HGCPF 393
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Match: A0A662YH99_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH99_9STRA) HSP 1 Score: 127 bits (318), Expect = 8.540e-28 Identity = 81/215 (37.67%), Postives = 113/215 (52.56%), Query Frame = 2
Query: 971 PFEKVLPLVRSRRVLLGDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLP--GVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQYEYSLRHLCGLEGKRKAYRPQSCARIASVGWGGSGEGGYGHGCPY 1609
PF +V LVR RRV++ G L+ ++ A + HF+ L++ L + +P G E D R+ VL + SLV G R +A IDQ+AEKHFPLCM++ LR HHLKY R+Q FL+ G V E L +R EF K +P ++ + +Y Y +RH GLEG R+ Y P SC +I + G + G HGCP+
Sbjct: 95 PFHEVSALVRQRRVVVRKGCCLIPSHEMDYAALHHFKRSLKQQLGDLQCAIPALGPELD-RLTPVLDGFLAKAHSLVGSSGSRSRTRPRLEVA-----GIDQVAEKHFPLCMKQLHHKLRENHHLKYDGRVQYRLFLKGVGFSVYETLQFFRTEFTKKIPPAKFEK---EYAYHIRHSYGLEGSRRDYAPLSCEQIIN---GSAPSHGQYHGCPF 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig92.18435.1 >prot_Ecto-sp6_S_contig92.18435.1 ID=prot_Ecto-sp6_S_contig92.18435.1|Name=mRNA_Ecto-sp6_S_contig92.18435.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=657bp METCNPPGFYVDPPAFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVSEAback to top mRNA from alignment at Ecto-sp6_S_contig92:548756..552514+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig92.18435.1 ID=mRNA_Ecto-sp6_S_contig92.18435.1|Name=mRNA_Ecto-sp6_S_contig92.18435.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3759bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:548756..552514+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:548756..552514+ >mRNA_Ecto-sp6_S_contig92.18435.1 ID=mRNA_Ecto-sp6_S_contig92.18435.1|Name=mRNA_Ecto-sp6_S_contig92.18435.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1971bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:548756..552514+ (Ectocarpus species6 EcLAC_371)back to top |