mRNA_Ecto-sp6_S_contig92.18433.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18433.1
Unique NamemRNA_Ecto-sp6_S_contig92.18433.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18433.1 vs. uniprot
Match: D7FU96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU96_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.140e-19
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MRKKPHPNNGSSSSVLERLVVFLVTHSPLQLTPPSRCFLGSMNARCLGVL 150
            MRKKPHPNNGSSSSVLERLVVFLVT+SP      S CFLGSMNARCLGVL
Sbjct:    1 MRKKPHPNNGSSSSVLERLVVFLVTYSP------SLCFLGSMNARCLGVL 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU96_ECTSI1.140e-1984.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:534362..534514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_001380.1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350564.008365-CDS-Ecto-sp6_S_contig92:534361..5345141682350564.008365-CDS-Ecto-sp6_S_contig92:534361..534514Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 534362..534514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18433.1prot_Ecto-sp6_S_contig92.18433.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 534362..534514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18433.1

>prot_Ecto-sp6_S_contig92.18433.1 ID=prot_Ecto-sp6_S_contig92.18433.1|Name=mRNA_Ecto-sp6_S_contig92.18433.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=51bp
MRKKPHPNNGSSSSVLERLVVFLVTHSPLQLTPPSRCFLGSMNARCLGVL
*
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mRNA from alignment at Ecto-sp6_S_contig92:534362..534514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18433.1 ID=mRNA_Ecto-sp6_S_contig92.18433.1|Name=mRNA_Ecto-sp6_S_contig92.18433.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:534362..534514+ (Ectocarpus species6 EcLAC_371)
ATGCGTAAGAAACCCCACCCCAACAACGGCAGCAGCAGCAGCGTGTTGGA
GCGGTTGGTCGTTTTTCTGGTCACTCACTCGCCGCTGCAGCTGACGCCGC
CGTCACGTTGTTTTCTTGGGTCGATGAACGCACGCTGTTTAGGAGTACTA
TAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:534362..534514+

>mRNA_Ecto-sp6_S_contig92.18433.1 ID=mRNA_Ecto-sp6_S_contig92.18433.1|Name=mRNA_Ecto-sp6_S_contig92.18433.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:534362..534514+ (Ectocarpus species6 EcLAC_371)
ATGCGTAAGAAACCCCACCCCAACAACGGCAGCAGCAGCAGCGTGTTGGA
GCGGTTGGTCGTTTTTCTGGTCACTCACTCGCCGCTGCAGCTGACGCCGC
CGTCACGTTGTTTTCTTGGGTCGATGAACGCACGCTGTTTAGGAGTACTA
TAG
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