mRNA_Ecto-sp6_S_contig92.18432.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18432.1 vs. uniprot
Match: D7FU95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU95_ECTSI) HSP 1 Score: 1879 bits (4868), Expect = 0.000e+0 Identity = 1211/1349 (89.77%), Postives = 1227/1349 (90.96%), Query Frame = 1
Query: 346 MVVLPTRVAYEVLLQPPVFETHRGEPPPPLVSLAVSSATRATASTAGSASRTLVKEGAGEGXXXXXXXXXXXXXXXXXXXXXSDGLILSKKAGWRGRRVLQTDDSGSFTYTSRTQFDLCAAPGSELEEDALRAGIMDVFEVEQEQTEGTTGTVEKREVMEFCDEGSEEWTIAIGNEPSDTQSAAVISAEQMELVRSSEFTTLLAASLEDSNLSVDPAGLTYSSLGYIVLYNEDQAVTAANSDSLDSDFVAFRGPDQWWPPGHAGPPSPSGAGGGPGMFGGSTRGGTGKEIGKGGGEGNADWIAQQYDKGGSGGGYGDKDFNDAATGISVYSPRDEVATSGSGVDSATVVQAAESPELASGEWPEAMESGVGMTGVAYTSNSRGGASTVASQQGDEATAVQSAEADRAAGVDPSRREHDTSTSAISMNPLVTSDSFNPAASGSGDGRVPGGYIGDSAASLESSRKSSEASWGASRKTVTPGDSGPLETTEEAEEGESPAPLISGPSGRTLGSAAAALGGEDSQDEDGRIGSGSAFGXXXXXRAPSAVSYRTEDGSASVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--IDGPAAVVXXXXXXTAVPGLPPSGRSSSNSSSRIQSVDYPASRVARSRAASNSSSADELSQREFTEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAVEGLEASRAPDSGTGAAEPVDLGSPADVPAEAVAXXXXXXXXXXXXXXXXXXXSPSPAATGFMGKVVAGIGMSRFFAPRSPANTPSAAXXXXXXXXXADGAEPTAELEATAAGDSEAVPAQNVAAAGAVAGVPPXXXXXXXDASADAAXXXXXXXXXXXXXXAGASSREEGRPEQVLPSPSEAGAAXXX------AAPLGPEEARAYSENVDRTLEGLPTDDGGVSMPMSELLARAELEASAEHPTPAAALALLQQSVAGSQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVGAARGGPGAPRGRGLLQRNSASGSYISSRSTSITEDMMSNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAARNRFLAGGAXXXXXXXXXXXXXXXXSLASGXXXXXXXXXNPPPGGGNLSSLAERLARAEETVGREHEKGLLYRQGPEGVAAAVAGEELPLPPGAAASLPMVIRGGAGRSSMSGGGSSTGEKVESLADLLARADDGPGNLKETFRLLDDNEARRLEELNAAASAEDADDDTKTRWRGSLAELMLKVDRSGNLRDILDIGSDTSESASASDGKXXXXXXXXXGGALSSETDSTSGSVPQTGQAAAPQARPE 4368
MVVLPTRVAYEVLLQPPVFE+HRGEPPPPLVSLAV SAT + ASTAGSASRTLVKEG GEG SDGLILSKKAGWRGRRVLQTDDSGSFTYT+RTQFDLCAAPGSELEEDALRAGIMDVFEVEQEQTEGT GTVEKREVMEFCD+GSEEWTIAIGNEPSDTQSAAVISA QMELVRSSEFTTLLAASLEDSNL+VDPAGLTYSSLGYIVLY+E+QAVTAANSDSLDSDFVAFRGPDQWWP GHAGPPSPSGAGGGPGMFGGSTRGGTGKE+GKGGG GNADWIAQQY+KG GYGDKDFNDAATGISVYSPRDEVATSGSGVDSATVVQAAESPELASGEWPEAMESGVGMTGV YTSNSRGGASTVASQQGDEATAVQSAEADRAAGVDPSRREHDTSTSAISMNPLVTSDSFNPAASGSGDGRVPGGYIGDSAASLESSRKSSEASWGASRKTVTPGDSG LETTEEAEEGESPAPLISGPSGRTLGSAAAALGGEDSQDEDGRIGSGSA GXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IDGPAAVVXXXXXXTAVPGLPPSGRSSSNSSSRIQSVDYPASRVARSRAASNSSSADELSQR+ TEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAV+GLEASRAPDSGTGAAEPVDLGSPAD+PAE VA SPSPAATGFMGKVVAG+GMSRFFAPRSPANTPSAAXXXXXXXXX DGAEPTAE+EATAAGDSEAVPAQ V XXXXXXX XXXXXXX X AGASSREEGRPEQ LPSPSEAG XXX AAPLGPEEARAYSENVDRTLEGLP DDGGVSMPMSELLARAELEASAEHP PAAALALLQQSVAGSQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVGAARGGPGAPRGRGLLQRNSASGSYISSRSTSITEDMMSNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAARNRFLAGGAXXXXXXXXXXXXXX + XXXXXXXXXNPPPGGGNLSSLAERLARAEETVGREHEKGLLYRQGPEGVAAAVAGEELPLPPGAAASLP VIRGGAGRSSMSGGGSSTGEKVESLADLLARADDGPGNLKETFRLLDDNEA+RLEELNAAASAEDADDDTKTRWRGSLAELMLKVDRSGNLRDILDIGSDTSESASASDGKXXXXXXXXXGGALSSETDSTSGSVPQTGQAAAPQARPE
Sbjct: 1 MVVLPTRVAYEVLLQPPVFESHRGEPPPPLVSLAVPSATGSAASTAGSASRTLVKEGTGEGGGRRRLSDFSRDGGGSDG---SDGLILSKKAGWRGRRVLQTDDSGSFTYTTRTQFDLCAAPGSELEEDALRAGIMDVFEVEQEQTEGTAGTVEKREVMEFCDDGSEEWTIAIGNEPSDTQSAAVISAGQMELVRSSEFTTLLAASLEDSNLTVDPAGLTYSSLGYIVLYDEEQAVTAANSDSLDSDFVAFRGPDQWWP-GHAGPPSPSGAGGGPGMFGGSTRGGTGKEVGKGGGGGNADWIAQQYEKGXXXXGYGDKDFNDAATGISVYSPRDEVATSGSGVDSATVVQAAESPELASGEWPEAMESGVGMTGVTYTSNSRGGASTVASQQGDEATAVQSAEADRAAGVDPSRREHDTSTSAISMNPLVTSDSFNPAASGSGDGRVPGGYIGDSAASLESSRKSSEASWGASRKTVTPGDSGLLETTEEAEEGESPAPLISGPSGRTLGSAAAALGGEDSQDEDGRIGSGSAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDGPAAVVXXXXXXTAVPGLPPSGRSSSNSSSRIQSVDYPASRVARSRAASNSSSADELSQRDLTEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAVQGLEASRAPDSGTGAAEPVDLGSPADLPAEVVAAAITAAAAGDAEKEGEAAASPSPAATGFMGKVVAGMGMSRFFAPRSPANTPSAAXXXXXXXXX-DGAEPTAEVEATAAGDSEAVPAQYVXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXEXANAHKAGASSREEGRPEQKLPSPSEAGXXXXXXXXXXPAAPLGPEEARAYSENVDRTLEGLPIDDGGVSMPMSELLARAELEASAEHPAPAAALALLQQSVAGSQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVGAARGGPGAPRGRGLLQRNSASGSYISSRSTSITEDMMSNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAARNRFLAGGAXXXXXXXXXXXXXXSVASGXXXXXXXXXXXNPPPGGGNLSSLAERLARAEETVGREHEKGLLYRQGPEGVAAAVAGEELPLPPGAAASLPRVIRGGAGRSSMSGGGSSTGEKVESLADLLARADDGPGNLKETFRLLDDNEAQRLEELNAAASAEDADDDTKTRWRGSLAELMLKVDRSGNLRDILDIGSDTSESASASDGKXXXXXXXXXGGALSSETDSTSGSVPQTGQAAAPQARPE 1342
BLAST of mRNA_Ecto-sp6_S_contig92.18432.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE) HSP 1 Score: 1698 bits (4397), Expect = 0.000e+0 Identity = 1154/1608 (71.77%), Postives = 1212/1608 (75.37%), Query Frame = 1
Query: 40 MEQQEDGGGGDVEMPRRGVGVRXXXXXXSLRKQQVASLLSSCEDGFGEGSSRGGRNNSSNEDGRFWRRDGGQARGXXXXXXXAGGRRPALVFVAQVVLSFVGMVVLPTRVAYEVLLQPPVFETHRGEPPPPLVSLAVSSATRATASTAGSASRTLVKEGAGEGXXXXXXXXXXXXXXXXXXXXXSDGLILSKKAGWRGRRVLQTDDSGSFTYTSRTQFDLCAAPGSELEEDALRAGIMDVFEVEQEQTEGTTGTVEKREVMEFCDEGSEEWTIAIGNEPSDTQSAAVISAEQMELVRSSEFTTLLAASLEDSNLSVDPAGLTYSSLGYIVLYNEDQAVTAANSDSLDSDFVAFRGPDQWWP--------------------------PGHAGPPSPSGAGGGPGMFGGSTRGGTGKEIGKGGGEGNADWIAQQYDKGGSGGGYGDKDFNDAATGISVYSPRDEVATSGSGVDSATVVQAAESPELASGEWPEAMESGVGMTGVAYTSNSRGGASTVASQQGDEATAVQSAEADRAAGVDPSRREHDTSTSAISMNPLVTSDSFNPAASGSGDGRVPGGYIGDSAASLESSRKSSEASWGASRKTVTPGDSGPLETTEEAEEGESPAPLISGPSGRTLGSAAAALGGEDSQDEDGRIGSGSAFGXXXXXRAPSAVSYRTEDGSASVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDGPAAVVXXXXXXTAVPGLPPSGRSSSNSSSRIQSVDYPASRVARSRAASNSSSADELSQREFTEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAVEGLEASRAPDSGTGAAEPVDLGSPADVPAEAVAXXXXXXXXXXXXXXXXXXXSPSPAATGFMGKVVAGIGM--SRFFAPRSPANTPSAAXXXXXXXXXADGAEPTAELEATAAGDSEAVPAQNVAAAGAVAGVPPXXXXXXXDASADA---------------------------------------------------------------------------AXXXXXXXXXXXXXXAGASSREEGRPEQVLPSPSEAGAAXXX------AAPLGPEEARAYSENVDRTLEGLPTDDGGVSMPMSELLARAELEASAEHPTPAAA----------------------------------------------------LALLQQSVAGSQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVGAARGGPGAPRGRGLLQRNSASGSYISSRSTSITEDMMSNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAARNRFLAGGAXXXXXXXXXXXXXXXXSLASGXXXXXXXXXNPPPGGGNLSSLAERLARAEETVGR-EHEKGLLYRQGPEGVAAAVAGEELPLPPGAAASLPMVIRGGAG---RSSMSGGGSSTGEKVESLADLLARADDGPGNLKETFRLLDDNEARRLEELNAAASAEDADDDTKTRWRGSLAELMLKVDRSGNLRDILDIGSDTSESASASDGKXXXXXXXXXGGALSSETDSTSGSVPQTGQAAAPQARPE 4368
MEQQEDGGGGDVEMPRR VGVR SL+++QVAS S CED FGEGS RGGRN SSNEDG+FWR G Q RG GGRRPALVFVAQ VLSFVGMVVLPTRVAY+VLLQP VFE+HRGEP XXXXXXXXXXXXXXXXXXXXXSDGL+ SKKAGWR RRVLQTDD SFTYTSRTQFDLCAAPGSELEEDALRAGIMDVFEVEQEQTEGTTGTVEKREV EFCD+GSEEWTIAIGNEPSDTQSAAVISA QMELVRSSEFTTLLA+SLEDSNLSV+PAGLTYSSLGYIVLY+EDQAVT ANSDSLDSDFVAFRGPDQWWP PG AGPPSPSGAGGGPGMFGGSTRGGT KEIG+G NADWI QQY+ GYGDKDFNDAATGISVYSP++EVATS SG DSATVVQAAESP++ASGEWPEA+ESGVG TGV YTS SRGGAS+VASQQGDEATAVQSAEADRAAGVDPSRREHDT+TSA+S+ PLVTS SFNPAASGSGDGRVPGGY+GDSAASLESS+KS EASWG SRKTVTPGDSG LE TEEA+EG+SPAPLISGPSGRTLGSAAAALG EDSQDED RIGS XXXXX SAVSYRT DGSASVQS XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX AVPGLPPSGRSSSNSSSRIQSVD+PASR RSRAASNSSSADELSQR+ TEEE QMRVED+EAARAASVLRGSSFKTPL PDLE AIAVE+Q+RRRQAV+ +EAS APDSGTGAAEPVDLGSPAD+PAEAV S SPAATGFMGKVVAG+GM SR F PRSPANTPSAA ADGAEPT E+EATAAGDS+AVP+Q+VAAAGAVAGVPP DA ADA A XXXXXXXX AGASSREEGRPEQVLPSPSEAGAAXXX AA LGPEEARAYSENVDRTLEGLP DDGGVSMPMSELLARAELEAS EHPTP LA++QQSVAGS SPSLDMAR L+ AEEGGMTL+EV+ACLASPIVATPPALLRPGVGA R APR GLLQRNSASGSY+SSRSTSITED++SNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAAR+RFLAGGAXXXXXXXXXXX S+ASG NP G SS+AE LARAEETV R +HEKGLLYRQGPE VAAA+ GE+ PLPPGAAASLP IRGGAG RSSMSGGGSSTGE+VE+LA+LLARA+DGPGNLKE FRLLDDNEARRLE+LNAAASAEDADDDTKTRWRGSLAELMLKVDRSGNLRDILDIGSDTSESASASDGK XXX GGALSSETDSTSGSV QTGQAAAPQARPE
Sbjct: 1 MEQQEDGGGGDVEMPRRAVGVRRRRHDESLKQRQVASSSSWCEDRFGEGSRRGGRNKSSNEDGQFWRCGGDQVRGSGGGKEGTGGRRPALVFVAQAVLSFVGMVVLPTRVAYDVLLQPRVFESHRGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXSDGLVSSKKAGWRSRRVLQTDDGDSFTYTSRTQFDLCAAPGSELEEDALRAGIMDVFEVEQEQTEGTTGTVEKREVTEFCDDGSEEWTIAIGNEPSDTQSAAVISAGQMELVRSSEFTTLLASSLEDSNLSVNPAGLTYSSLGYIVLYDEDQAVTTANSDSLDSDFVAFRGPDQWWPWXXXLLFGLVLLCCICPLAACIYYYRPGLAGPPSPSGAGGGPGMFGGSTRGGTRKEIGRGXXXXNADWITQQYEXXXXXXGYGDKDFNDAATGISVYSPQEEVATSASGGDSATVVQAAESPQVASGEWPEAIESGVGTTGVTYTSTSRGGASSVASQQGDEATAVQSAEADRAAGVDPSRREHDTTTSALSIKPLVTSGSFNPAASGSGDGRVPGGYMGDSAASLESSQKSREASWGVSRKTVTPGDSGLLEATEEADEGDSPAPLISGPSGRTLGSAAAALGEEDSQDEDERIGSXXXXXXXXXXXXQSAVSYRTADGSASVQSTSTLAPLDAKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXAVPGLPPSGRSSSNSSSRIQSVDHPASRAVRSRAASNSSSADELSQRDLTEEEHQMRVEDAEAARAASVLRGSSFKTPLQPDLERAIAVEEQERRRQAVQAVEASLAPDSGTGAAEPVDLGSPADLPAEAVTAAIAASATGDTEKEGGASVSSSPAATGFMGKVVAGMGMGMSRIFGPRSPANTPSAASAAATAA--ADGAEPTVEVEATAAGDSKAVPSQDVAAAGAVAGVPPPEQAQAGDAGADADAAEGEGPAATGVLPPMDEGESEXXXXXXXXXXXXXAPPAAIAAAAAGAXXXXXXXXXXXXXXXXXXXXXXXAGVADSGXXXXXXXXDQKAGASSREEGRPEQVLPSPSEAGAAXXXXXXAVPAAALGPEEARAYSENVDRTLEGLPIDDGGVSMPMSELLARAELEASIEHPTPTPTVPPLSAXXXXXXXXXXAVPPMGASXXXXXXXXXXXXXXXXXXXXXXXPAGPRLAMVQQSVAGSPSPSLDMARFLHTAEEGGMTLDEVDACLASPIVATPPALLRPGVGAPR----APRSGGLLQRNSASGSYMSSRSTSITEDVISNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAARSRFLAGGAXXXXXXXXXXXD----SVASGAAPAAAM--NPXXXXG--SSVAELLARAEETVTRGDHEKGLLYRQGPEAVAAALDGEKPPLPPGAAASLPRGIRGGAGTGGRSSMSGGGSSTGERVETLAELLARANDGPGNLKEAFRLLDDNEARRLEDLNAAASAEDADDDTKTRWRGSLAELMLKVDRSGNLRDILDIGSDTSESASASDGKSAGTXXXNRGGALSSETDSTSGSVSQTGQAAAPQARPE 1587
BLAST of mRNA_Ecto-sp6_S_contig92.18432.1 vs. uniprot
Match: A0A6H5KLU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU0_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.880e-12 Identity = 85/273 (31.14%), Postives = 114/273 (41.76%), Query Frame = 1
Query: 3199 PTPAAALALLQQSVAGSQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVGAARGGPGAPRGRGLLQRNSASGSYISSRSTSITEDMMSNNNLTEDDMSSDAQTTDVSRTSSFVATGSSFEENPAQSQAARNRFLAGGAXXXXXXXXXXXXXXXXSLASGXXXXXXXXXNPPPGGGNLSSLAERLARAEETVGREHEKGLLYRQGPEGVAAAVAGEELPLPPGAAASLPMVIRGGAGRSSMSGGGSSTGEKVESLADLLARA 4017
P AA AL ++S A SQ+P D+A LL NAE GGM L+++EA L S I+ +PP++LRPG +RG GLL+ N R + G++ SL LA+RLA+AEET+G +H KGLL+RQGP+GVA + G E+P P A SLP +S+SGGG EK ES++DL+ RA
Sbjct: 152 PGQAAVRALPKRSAARSQAPVPDIADLLDNAEMGGMALDDLEASLTSLIMNSPPSMLRPGTTVSRG-------LGLLRGN---------------------------------------REGAGAGVGATLP----------------------------------SLG----------------------LADRLAQAEETIGGDHTKGLLFRQGPDGVAVGIDGGEVPRPSAAVTSLPASTT--MPTNSLSGGGELDDEKAESVSDLVMRA 320 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig92.18432.1 >prot_Ecto-sp6_S_contig92.18432.1 ID=prot_Ecto-sp6_S_contig92.18432.1|Name=mRNA_Ecto-sp6_S_contig92.18432.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1444bp MEQQEDGGGGDVEMPRRGVGVRRRRHHDSLRKQQVASLLSSCEDGFGEGSback to top mRNA from alignment at Ecto-sp6_S_contig92:518540..532652+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig92.18432.1 ID=mRNA_Ecto-sp6_S_contig92.18432.1|Name=mRNA_Ecto-sp6_S_contig92.18432.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=14113bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:518540..532652+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:518540..532652+ >mRNA_Ecto-sp6_S_contig92.18432.1 ID=mRNA_Ecto-sp6_S_contig92.18432.1|Name=mRNA_Ecto-sp6_S_contig92.18432.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=4332bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:518540..532652+ (Ectocarpus species6 EcLAC_371)back to top |