mRNA_Ecto-sp6_S_contig92.18417.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18417.1
Unique NamemRNA_Ecto-sp6_S_contig92.18417.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: D7FPS9_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPS9_ECTSI)

HSP 1 Score: 647 bits (1669), Expect = 4.550e-231
Identity = 339/341 (99.41%), Postives = 340/341 (99.71%), Query Frame = 1 
Query:   85 MSSKPGKKKSKATRWGKAATAKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNSKQQGSGKKRSRWAMGNGSGSNSTDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVQAALAAPKAGEEAAIDVKATRAAWARL 1107
            MSSKPGKKKSKATRWGKAA AKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNSKQQGSGKKRSRWAMGNGSGSNSTDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDV+AALAAPKAGEEAAIDVKATRAAWARL
Sbjct:    1 MSSKPGKKKSKATRWGKAAKAKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNSKQQGSGKKRSRWAMGNGSGSNSTDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEAALAAPKAGEEAAIDVKATRAAWARL 341
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: R7UTY3_CAPTE (PCI domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UTY3_CAPTE)

HSP 1 Score: 233 bits (594), Expect = 1.990e-65
Identity = 113/225 (50.22%), Postives = 160/225 (71.11%), Query Frame = 1 
Query:  340 VRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 1014
            + G+SSSLEK YFRLTSAP PS VRP E+L +SL  VK  W  ++DY +VC+QLK+IRQDLTVQA+ D  TV+VY+ H RIA+E GD EE+NQCQ++LK L+  G    +++EF  YR++Y ++ +N  ++   M  L+ EARQ  GV HAL +  ++ +G+YC FFRLY +AP M  YL+D+   R R+ AIK ++KA+ P++ L ++Q++L F S   LLEF+
Sbjct:  398 IVGTSSSLEKQYFRLTSAPDPSTVRPVEVLRKSLLMVKHHWKAKQDYAYVCEQLKSIRQDLTVQAVRDAFTVNVYEVHARIAMEKGDHEEFNQCQTQLKLLYQEGCNSDNINEFAAYRILYYIFTKNTLDLTTVMASLNYEARQDAGVKHALRLRSAWALGNYCLFFRLYLSAPKMGGYLIDWFASRERKAAIKRIIKAFKPSMTLDYLQKELGFSSAKDLLEFL 622
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A2G8JDH4_STIJA (Putative leukocyte receptor cluster member 8-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JDH4_STIJA)

HSP 1 Score: 216 bits (549), Expect = 1.320e-62
Identity = 118/269 (43.87%), Postives = 170/269 (63.20%), Query Frame = 1 
Query:  217 RNAARFAEHLGGGSNSKQQGSGKKRSRWAMGNGSGSN---STDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 1014
            + AARF + L   + +K+Q  GK   +    N S  +   S +PV G+   + K Y RLT+AP  S+VRP E+L +S+  VK KW  ++DY ++C+QLK+IRQDLTVQ I +G TV VY+ H RIALE GD EE+NQCQ++LK L+   +PG +++EFT YR++Y +   +  ++   +  LS   +    V HAL +  +  + DY  FF LY +AP MS YLMD  V R R+ AIK MVK+Y P +P++FIQ +L F S +  L+F+
Sbjct:    3 KRAARFQDMLKEEAPTKKQRKGKLSIQINSTNNSSEDLEWSLEPVAGTCQDIFKQYLRLTTAPNASEVRPLEVLKKSIEAVKVKWLEKKDYRYICNQLKSIRQDLTVQRIRNGFTVKVYEAHARIALEKGDREEFNQCQTQLKSLYAENIPG-NVNEFTAYRILYYILTNSSSDITTALTSLSPTVKNNAMVQHALALRTAVALSDYHKFFLLYRSAPKMSPYLMDMFVERQRKDAIKAMVKSYRPNLPVAFIQNELAFQSSEDCLKFL 270
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A8H7S054_9FUNG (PCI domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S054_9FUNG)

HSP 1 Score: 226 bits (575), Expect = 1.330e-62
Identity = 115/230 (50.00%), Postives = 159/230 (69.13%), Query Frame = 1 
Query:  325 NSTDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 1014
            N  D + G+S  LEK+YFRLTSAP PS VRPP++L ++L  +K KW  E++Y ++CDQ K++RQDLTVQ I D  TV VY+ H RIALE GD+ EYNQCQS+LK+L+  G+ G  M EFT YR++Y L+ +N  ++N+ M +L+ E +Q + V HAL V  +    +Y  FF+LY +AP M  YLMD  V R R RA+  + KAY PT+ L FIQ +L F+ ++ LL+F+
Sbjct:  392 NKHDSIIGTSQMLEKNYFRLTSAPDPSTVRPPKVLKKTLELLKTKWRDEQNYTYICDQFKSMRQDLTVQRIRDEFTVTVYEIHARIALEKGDLGEYNQCQSQLKQLYAMGINGNVM-EFTAYRILYYLHTQNWSDINSIMFELTAEQKQNDLVKHALQVRSALSTSNYHRFFKLYVSAPQMGGYLMDQFVERERVRAMLILCKAYRPTMSLEFIQNELAFERQEDLLKFL 620
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A162NBM1_PHYB8 (PCI domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162NBM1_PHYB8)

HSP 1 Score: 214 bits (546), Expect = 1.710e-62
Identity = 110/225 (48.89%), Postives = 153/225 (68.00%), Query Frame = 1 
Query:  340 VRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 1014
            + G+S  LEK Y RLTSAP PS VRP  IL ++L  +K KW  E++Y ++CDQ K++RQDLTVQ I D  TV VY+ H RIALE GD+ EYNQCQS+LK+L++ G+PG  M EFT YR++Y L+ +N  ++N+ M +++ E ++ E V HAL V       +Y  FFRLY +AP M  YLMD  + R R +A+  + KA  P +PLSFIQ +L F+  + L++F+
Sbjct:    8 IIGTSVKLEKQYLRLTSAPDPSTVRPLPILKQTLELLKDKWKAEQNYTYICDQFKSMRQDLTVQRIRDEFTVQVYEIHARIALEKGDLGEYNQCQSQLKQLYMLGIPGNVM-EFTAYRILYFLHTQNWSDINSIMAEVTPEQKRDEAVQHALQVRSCLATSNYHRFFRLYTSAPNMGGYLMDQFIERERVQALIILCKACRPDLPLSFIQTELAFEDHEQLIKFL 231
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A7S3YM12_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM12_HETAK)

HSP 1 Score: 214 bits (546), Expect = 1.880e-62
Identity = 117/233 (50.21%), Postives = 156/233 (66.95%), Query Frame = 1 
Query:  340 VRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEE-DYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHR-------EVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 1014
            V+G+  +LEK YFRLTSAP PS VRPP +L  ++  +K+ W  +E DYE+VCDQLKA+RQD TVQ I DGL VDVY+TH RIALE GD+ EYNQCQ++LKEL+ SG PG  M EFT YR++Y +  ++++       E+   +  L    R    VAHAL V ++    DY  FF+LY  AP MS+Y+MD ++ ++R +A++ +VKAY PTI   FIQ  L FDS D   E +
Sbjct:    3 VKGTCVNLEKRYFRLTSAPDPSTVRPPPVLEEAMLRLKKLWKDQEKDYEYVCDQLKAVRQDCTVQQIRDGLAVDVYETHARIALEEGDLNEYNQCQTQLKELYASGAPGHEM-EFTAYRVLYYVNMQDNQKNQDGSTEMLKMLKALRPAQRADPAVAHALRVRQAMAEDDYHLFFQLYEDAPNMSAYIMDLMLDKIRVKALQRVVKAYKPTIATDFIQRILAFDSEDECFELL 234
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BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A1B6M2U9_9HEMI (PCI domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M2U9_9HEMI)

HSP 1 Score: 212 bits (540), Expect = 1.030e-61
Identity = 105/220 (47.73%), Postives = 154/220 (70.00%), Query Frame = 1 
Query:  361 LEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDK 1020
            LEK Y RLT+AP+ + VRPP++L +SL  VK +W   +DY + C+QLK+IRQDLTVQ + D LTV VY+TH RIALE GD  E+NQCQS+LK L+   +P  +  EFT YR++Y ++ + + ++N  M  L+++ R  E V+HAL V  ++ +G+Y   F+LY AAP MSSYLMD+ + R R+ A+KT+VKAY  T+P+SF+ ++L F +     +F+ +
Sbjct:   20 LEKPYLRLTAAPEANAVRPPDVLRQSLSRVKERWVLNQDYHYACEQLKSIRQDLTVQGVRDKLTVSVYETHARIALEKGDHAEFNQCQSQLKLLY-EDLPTENQQEFTAYRILYYIFTKENMDLNTVMTALTEDDRGDECVSHALNVRSAWSLGNYHRLFKLYRAAPRMSSYLMDWFLPRERKLALKTVVKAYRQTLPVSFLTQELAFQTDVVCRQFLSQ 238
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A1X0RW83_RHIZD (PCI domain-containing protein (Fragment) n=2 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RW83_RHIZD)

HSP 1 Score: 212 bits (539), Expect = 1.690e-61
Identity = 109/227 (48.02%), Postives = 156/227 (68.72%), Query Frame = 1 
Query:  334 DPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 1014
            D + G+S+ LEK Y RLTSAP PS VRP  IL ++L+ ++ KW +E++Y ++CDQ K++RQDLTVQ I++  TV VY+ H RIALE GD+ EYNQCQ++L+ L+ S +PG  M EFT YR++Y L+ +N  +VN+ M +L+ E ++ E + HAL V  S    +Y  FF LY  AP M  YLMD  V R R +++  + KAY P + L FIQ +L F+SR+ L++F+
Sbjct:    1 DTIIGTSTKLEKQYLRLTSAPDPSTVRPLHILKQTLQLLRDKWKSEQNYTYICDQFKSMRQDLTVQRIKNEFTVQVYEIHARIALEKGDLGEYNQCQTQLRGLYASKIPGNVM-EFTAYRILYFLHTQNWADVNSAMSELTGEQKENEFIQHALQVRSSLATSNYHRFFYLYKTAPNMGGYLMDQFVERERVQSLLILCKAYRPDLSLEFIQNELAFESREELIKFL 226
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A443SJM2_9ACAR (Leukocyte receptor cluster member 8-like isoform X2 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SJM2_9ACAR)

HSP 1 Score: 211 bits (538), Expect = 5.540e-61
Identity = 104/231 (45.02%), Postives = 153/231 (66.23%), Query Frame = 1 
Query:  328 STDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDK 1020
            S  P+ G+   LEK Y RLTSAP P+ VRP  +L +SL  VK  W    DY + CDQLK+IRQDLTVQ + +  TV+VY+TH RIALE GD EE+NQCQS+L+ L+ + V  V+  EFTGY ++Y+++ +NH  +   +  ++      E + HAL V + + + +Y TFF+LY  AP MS +++D+ V R R+ A+K M+KAY PT+PL F++++L F + D   +F+ +
Sbjct:   46 SATPIVGTCEDLEKQYLRLTSAPDPATVRPVHVLRKSLESVKDHWIRNHDYYYACDQLKSIRQDLTVQFVRNSFTVEVYETHARIALEKGDREEFNQCQSQLQVLY-NEVDSVNKAEFTGYLILYTIFSDNHSGLQLLLSKINNSKLNDEVINHALTVRRCWSLKNYSTFFKLYLKAPKMSGFVIDWFVNRERKYALKAMLKAYRPTLPLQFLKDELAFANNDEFQQFLSQ 275
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Match: A0A023G7Z9_AMBTT (Putative leucine permease transcriptional regulator (Fragment) n=2 Tax=Amblyomma TaxID=6942 RepID=A0A023G7Z9_AMBTT)

HSP 1 Score: 215 bits (547), Expect = 5.740e-61
Identity = 114/253 (45.06%), Postives = 161/253 (63.64%), Query Frame = 1 
Query:  337 PVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVQAALAAPKAGEEAAIDVKATRAA 1095
            P+ G+   LEK Y RLTSAP PS +RP  +L  SL  VK  W  ++DY + CDQLK+IRQDLTVQ + +  TV VY+TH R+ALE GD EE+NQCQ++LK L+     G  + EF GYR++Y+++  N  E+   +  LS E ++ E V HAL V  ++ +G+Y  FF+LY   P MS +LMD+ V+R RR A+K MVKAY P +P+ +I+  L F  R+ +L F+ +     L    A + A++D K + AA
Sbjct:  156 PIVGTCQDLEKQYLRLTSAPDPSTIRPVAVLRESLDMVKEHWVQKQDYHYACDQLKSIRQDLTVQCVRNPFTVQVYETHARVALEKGDHEEFNQCQTQLKTLYQEVECGNPL-EFLGYRILYNVFARNTLELKTILAHLSAEEKRDEVVKHALAVCHAWSLGNYARFFKLYERPPKMSGFLMDWFVVRERRNALKAMVKAYRPVLPVGYIERALGFTDREDVLAFLTE-----LNVTLAADGASVDCKESLAA 402
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPS9_ECTSI4.550e-23199.41PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
R7UTY3_CAPTE1.990e-6550.22PCI domain-containing protein n=1 Tax=Capitella te... [more]
A0A2G8JDH4_STIJA1.320e-6243.87Putative leukocyte receptor cluster member 8-like ... [more]
A0A8H7S054_9FUNG1.330e-6250.00PCI domain-containing protein n=1 Tax=Mucor circin... [more]
A0A162NBM1_PHYB81.710e-6248.89PCI domain-containing protein n=1 Tax=Phycomyces b... [more]
A0A7S3YM12_HETAK1.880e-6250.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1B6M2U9_9HEMI1.030e-6147.73PCI domain-containing protein (Fragment) n=2 Tax=G... [more]
A0A1X0RW83_RHIZD1.690e-6148.02PCI domain-containing protein (Fragment) n=2 Tax=R... [more]
A0A443SJM2_9ACAR5.540e-6145.02Leukocyte receptor cluster member 8-like isoform X... [more]
A0A023G7Z9_AMBTT5.740e-6145.06Putative leucine permease transcriptional regulato... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:348271..355733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score651.0
Seed ortholog evalue3.1e-184
Seed eggNOG ortholog2880.D7FPS9
Model size1558
KEGG koko:K12196
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
Ec32 ortholog descriptionSAC3/GANP/Nin1/mts3/eIF-3 p25
Ec32 orthologEc-18_001590.1
Cds size1026
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18417.1prot_Ecto-sp6_S_contig92.18417.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 348355..355285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350562.0591202-UTR-Ecto-sp6_S_contig92:348270..3483541682350562.0591202-UTR-Ecto-sp6_S_contig92:348270..348354Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 348271..348354 +
1682350562.147904-UTR-Ecto-sp6_S_contig92:355285..3557331682350562.147904-UTR-Ecto-sp6_S_contig92:355285..355733Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 355286..355733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350562.070718-CDS-Ecto-sp6_S_contig92:348354..3484881682350562.070718-CDS-Ecto-sp6_S_contig92:348354..348488Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 348355..348488 +
1682350562.0803595-CDS-Ecto-sp6_S_contig92:349698..3497471682350562.0803595-CDS-Ecto-sp6_S_contig92:349698..349747Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 349699..349747 +
1682350562.0906267-CDS-Ecto-sp6_S_contig92:350889..3510541682350562.0906267-CDS-Ecto-sp6_S_contig92:350889..351054Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 350890..351054 +
1682350562.1005218-CDS-Ecto-sp6_S_contig92:351396..3515091682350562.1005218-CDS-Ecto-sp6_S_contig92:351396..351509Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 351397..351509 +
1682350562.1104193-CDS-Ecto-sp6_S_contig92:351933..3521131682350562.1104193-CDS-Ecto-sp6_S_contig92:351933..352113Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 351934..352113 +
1682350562.1197913-CDS-Ecto-sp6_S_contig92:352829..3529761682350562.1197913-CDS-Ecto-sp6_S_contig92:352829..352976Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 352830..352976 +
1682350562.1289792-CDS-Ecto-sp6_S_contig92:354110..3542071682350562.1289792-CDS-Ecto-sp6_S_contig92:354110..354207Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 354111..354207 +
1682350562.1385794-CDS-Ecto-sp6_S_contig92:355144..3552851682350562.1385794-CDS-Ecto-sp6_S_contig92:355144..355285Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 355145..355285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18417.1

>prot_Ecto-sp6_S_contig92.18417.1 ID=prot_Ecto-sp6_S_contig92.18417.1|Name=mRNA_Ecto-sp6_S_contig92.18417.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=342bp
MSSKPGKKKSKATRWGKAATAKPAAAAGGRGGIVGMETDEARKIRNAARF
AEHLGGGSNSKQQGSGKKRSRWAMGNGSGSNSTDPVRGSSSSLEKSYFRL
TSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQA
IEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFT
GYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCT
FFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRF
DSRDSLLEFIDKDVQAALAAPKAGEEAAIDVKATRAAWARL*
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mRNA from alignment at Ecto-sp6_S_contig92:348271..355733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18417.1 ID=mRNA_Ecto-sp6_S_contig92.18417.1|Name=mRNA_Ecto-sp6_S_contig92.18417.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7463bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:348271..355733+ (Ectocarpus species6 EcLAC_371)
AAGCCGGCCAGCAGACCACCAGACAGCAGCCGCGCAGTGAGCGCCAAAGC
AACGGGTTCCGGGTATCTGTGAGAGAAGGGAAGCATGTCATCGAAGCCTG
GAAAGAAAAAGAGCAAGGCTACTCGTTGGGGAAAGGCAGCGACGGCGAAA
CCAGCAGCTGCTGCTGGCGGGCGAGGTGGCATTGTCGGCATGGAAACAGA
TGAAGCAAGGAAAATCAGGTTGGTATGCACCTTGCACACAAGTAGTTTAC
CCAATGCAATGTGCAATACTGATGTGTGTACATCAACTTTGTGTTTTGTT
GGCTGATATCCTGTGCGTAGCAGTTACAGATAGTGGAGGTAACCGGGATT
GAATACAACTCACAGGTGTTTTATGGCAAACGTAGAATTTTCTTTTCGAA
TGCACAGAGCAGTAGCATGTCGTTACTCCGAGGTCCAAAAGGGGCAGACT
TTTACTGTTGGGACCAAGTCTGGGCACAGCATCCGTATGTAGCTCTGTTG
TGGTAAATTTTCTTATGATATGTAGCACATTCGATGAAGCGAAAGTTGAT
GTATTCAAGGTACACGTCGCGTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTCGGTCCAGATAGGGAAGGAATG
CAACAGGCGGTCGCTGCCGTGAACAATTTTTTTGAGTGGGGACCGTACAC
ACAAGATACCACACCCCCTTGCGCCTAATTTCAACCCTCGCGATTACTCC
ATGACGAAGAGGGCGACAAATTCACATGATGTTTTTTTGGGAAACTCTCG
ACATGCTGGTTCGAACATCTCAACGCCGCCAGTTTCGGCACCGTCACGGC
CGTTGTTGCTGCAGAGTAATGGAGCTTTGAAAAACGGTCTCGGGGGTGTG
GTATCCTCCGTGGCCTACACCCTAGTTAGTAGTACGACATGGCGGGTGCG
CGCCAGCTGCCTTGCCGTCTACTGCGTAAAGCCTCGGAGTTGTAGGAGAG
CATTGCGTACTCACGGACAACAGCGGAGGGGGGTGGGCTCAGTAGTACCG
GTTAGCCCGCTCTAAATTCGGTGAAAATCGCGTTGTTTCGTACCCTCAAC
AGTGCCGGCAACAGAGTAGTGCCGAGTGCCCGCTACCATCCTCTAACTTG
TTCGGTGAAGTCATTGCGCATCGTGTAAAAACTTGCATTCATCGCGCGTA
AAGTTGTACTTTTGTGGGCATTTGGCCTCTGACCAAGTGAAAGACGTCCG
CGCCCGTTGGACCGGTGCGGATGTTAGAAGGTTCTGAGCAGAAACCGGAA
CAGTTTTGATTACTGTAAAGACGAAGTTAGCAATAACAAACAATAGTCGC
GTGTTTGCCGTCCCCTGTCTCTCAACCTCTGCTCCCTATTTCCGCGCATG
TTCCTTGGACGGTGGTTGCTGCCACCAGAAACGCCGCAAGATTTGCGGAA
CACCTCGGTGGGGGATCGAATTCAAAGGTGCATTACACCCTCGTGTGTGA
CCACGGGTTGGGGTAAACGGCACAAGTGCTGTGAGCGCTGATTGGAAGTG
AAAACAAGAAATAAATATACCCCCCTGAAGATGTATGTTTCGGAGTGCTA
CAACAACATCGACCAACAAAAACAATGACCGCCGGAAAAATGCTCCGACG
GACTAGATTTACGGCAGCACGGGGCAGGGGGGGCGGGCTGAGGACTAGGG
CAGAAGGGGGGCTTCTTTTTCACCGTTTCTATCGTTTCAATACGTGTCTC
TCGTGAAAGCAAACATGTGTATTGCTTTGTCCGTGTAAACTCACGGCAAC
AGCACGAGGGACAGTCAGCGTGCGGGGATGTGCGATGATGGCGTCCTAAT
GAATTGTTGCTTCTCATGCCATTCGGCCGTTGACTGCGCCCCTTTTGAAA
CGGACCACCGTTCCTCCTCTTAGTACCATAGGGTGCCATGTTTTTGTACG
GTAGCGAACGTAGTTGTCCTGTCTTGTCCCTTCCAGTTTGGCGTTGTGTG
GCCATCTACTCCTAGTTATATGGCGATCGTTTTCTCACTGCTACAACCTA
GTTTTCCCCCCAAGTTTAAACACCGATCCATACCCCCCGTCTCCCTCTCG
GGGGCGCCCCTCATCTCTGCAGATTAGTTCGCATCCCGCAACTTTGCGAG
GTTCAGGCTCTTCAGCCTTAGGGCATGGATTTTTCTCTGGCATCCTGCCC
CCTGCTATGTATCGGTGCAACTCTCCCTTCCTTTATGGATAATCCGAGCC
CCCTTCTCGAAACAGCAGCTTCGTTTTTTTCTTGCAGAGGCCATCCGGCT
ACAACAGAGACAAGGTTGCAGTGCTGTTATTTCCCGTACCTCCAAGTGTT
TCTTTCTAATGCACCCTTCTCTCTCTCACCGTTAGCCTGTCCGTTTAACC
TGCCTATCGTTTCCAAAGGTCTGCCTCGTACACCCCGAAAGGCCTGCGTC
TCTCTGTGGCTACTTCCCGTCTCCGTCCATAATTTCCCGGTTCACAGTGC
CACAGAGCGAGGGGGGAAGTGGGGGCGCAGCAACTCGTGACTGCTGTGCT
GTAGGTTTTTGATATGCTCCAACCATTTCCCCTCTACGTCGTATGGGTCA
TTCGTGCCGCCCACTACAGCAGCAAGGCAGCGGCAAGAAGCGATCGCGAT
GGGCCATGGGCAACGGCAGCGGTAGCAACAGCACGGACCCGGTGCGGGGC
TCGTCGAGCTCGCTCGAGAAGAGCTACTTCCGTCTCACGTCCGCACCCAA
GCCTTCGGACGTGCGCCCTCCAGAAATCTTGACGGTGAGCTCATCTGGTG
GAAGGTTTTTCTGTCCGCGTCAGTACTGTTTAGGTCGCGTTGGTGGGATC
TGGTCATGGCTAACCGTATGTCGGGTGTTGTTGTTAGGTTTGGCCAGCGC
AATGTGTGCGTCAATATGATCATCTTGCTGCTGCTAGTGTTTTTTTTTCC
GTTTGGTTGTTTCTACGTTATCCCTTGCTAAATCCCGTCGGTACCCCCCC
CCCCTCATTCAAAAGAGGTCTCCCCCGTTTCATCGCCTTATACGGGGCTC
ATCACATCAGCGTTGTTTACCGTCAGTGCCGCTGGATGTTTTGAAGTGTC
GTTCGTCTTGCGCTCTTCTTCGTCAGAGATCGCTTCGGCACGTGAAGCGG
AAGTGGGCCACTGAGGAAGACTACGAGTTCGTGTGTGACCAGCTCAAGGC
TATCCGGCAAGATCTCACCGTGCAGGCCATCGAGGACGGGTGAGCGCCGT
GGCTAGAAAGAAGCGTCTTCCCGCGTTTTACCTGCGAAGGCACAAATTTT
TGCTCCTTCCAGATGAGGTGCCGGCCTATTGGTATATTGCTACAAGGCAC
GGCTGGATTCTCGCGACCAGGCCGTCGAGAACGACGAAGGGCCGCCGTAA
ACACTGCCTTTGCTTGTAGGTATCTCTGTTTGTTTTTATAGTGCCTGTTT
TGACCGTGTTATCTCTCGACTGCTTTCTTTCGTAGGAGCGCTCCAGATGC
GCCGGGCAATACGCTTGGCCGTGGAGCATAGGTTTTCCTTGCAAGAAGAA
GTTGGATTCGTGGTGAAGGCGAAGAGGATAACGGTTGCACCTTGTCGAGT
CCCCTCAACCCACGCTGGCTGCCACTGCTGTACGCACCACCACTAAACTC
TCGCGGTCTGCAGCCTGACGGTGGACGTGTACCAGACGCACGGGAGGATA
GCGCTGGAGTCGGGGGACATGGAGGAGTACAACCAGTGCCAGTCGCGCCT
GAAGGAGCTCCACCTCTCCGGCGTGCCCGGCGTGAGCATGGACGAGTTCA
CCGGCTACCGCCTCATCTATTCGCTTTACCGCGAGAATCATCGGTGAGAG
GGGAGAGGGGGAAGGGCTTCACACGGCAGCGGTGTACGTTACTTTTCGGG
TTTACCGTATGTTGCCAGCACGCTGTTGTTGCAGGCTGCTGTTCACGCGG
TGACCGATTTTTCCGAACGCCATCAGCTGCACTTAAACAACGTTTGCTTG
TTTTCGTACCTCAATAGTCTTAGTACATGTACGCGAGCTTTCCGCTAATA
ACACCCGGGGAGCGGGGAGATGAACGCGACGAACGTTCCTTCAAAGGCCC
TTCCGATTTGCCCTCTTCCCGTGTTGTACTCAAGACATGCTTGTCCTTTT
GCTGCTGTGCAGTTGCCAGTTAGAAGTACTTTTGTAGATCGAGGAACACG
CACTCATTTTCCCTTCTCCCTGCCCCCACCCACTTCGTGAACTCGGCAAC
CAGGTTAGCGGTTTTTTTTACCTCGGTTTTTTTTTTTGGCGGTAACCATA
ATGGTGGTCGAGGAGATCATGTTGTGCGGGGTCGAGAACCCTCACTCCGC
GCAACGGGGATGATCGCACCACGTTGTGTTAAATTGGTACACCCCCTGCC
CCCACCTCTTATTTTTGTGAGAGCCTGGTCCAGTGCGAACCCGGCGTGCT
CCGTCTCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTACGGCA
TGCACGACTATGAGTACATCCCCCCCCCTGCCCCCACCTCTTATTTTTTC
GGCACGCAGGGAGGTGAACGCAACGATGATGGACCTATCGCAGGAGGCGA
GGCAAGGGGAAGGCGTGGCGCACGCGCTGGGGGTCGTGAAGTCCTACCAC
ATGGGGGACTACTGCACCTTCTTCCGCCTGTACTTCGCCGCCCCGGCCAT
GAGCTCGTGAGTTTTGCGTGCAGCGTGCTACACTTTCTTGCTTTTTGATG
CGCCGAAATCACAGGAATCACAACCAGGTTTTATTAAAATATTTTGTACC
AGTAGTCGTTTTCTTTTTCGCGCGCTTGCGCTCGGTGCTAGAATTTGGAG
CACCTTGTGACTTTCGCTGGCCCCTTCCTTCATCATGCCCGAACACCCCG
GGAAAAAAGTCGTTGTAGGATGGTGTACGCAAAAACTGAGGAGCGTTCCG
AAGGTAATATCTCCAAGCTGCTGCGAACAAAGATCTTGCATGTTGGAATT
GGAGGACATGCGTCCAGGATGGACGCGCTCCACCCCAAATTCTCAACCTA
GTCTGTGTCAGGACACTAAGCCATGCTTGCCTCGCGACTTTCCAAAAAGA
GGAATTGCCCCTCTGCCCGTGGTCGGTTGGACCACCACGCCAGGAATCTC
CATCCTCAGAGCAGAAAGCTCCACATTTTATTGCTGTCCATGTGGGGTTT
TGCGTCACGCCATGCTCCGAACATAATATGTATGTGGAACTTGAATCTTC
TTGCCCCCCTGGTGTTAGTTAAGCCCCACTGGCGTAAGAGCAGGGGGGTA
CGCCGGATCATTGACGTATTTGGTGTTGCCCCTAGGGCTCTAACCACGGG
CGATCGACCACGTGGGTCTGTAGTAGAAGCAGTGTGTGCGTGTCGTGCAT
GGCGATGATGCGCGTCAGAATCTTCCATCCTCTCGTTGTTTCCGATTGGT
CCCTATCAAGTTCCAGGTATGTGGCAACTGTGGGCTTAAAAGTGATTTCG
TCTGTCTCTGCAGTTAGCTGCGTTTGTGAAGATACGCCCTCTAGCATGTT
TTGTTGGCCCCTAGAATTGGTACGATTTGGTATTTACTCCCCCCCTCGTG
CGCCCGCGTATACTTTCGACATCCATATGAATGTTCATGTTTGCTCATGT
GGTCGTCGCTTCTTGGCGCATGAATCGAATCAAACCTTTATCTCTGAAGT
GGGCAGTATCTCAACCAAGGTGTGGCGTCTCTCTCTCTCTCCCCCTCTCT
CTTTTCGTTTCCCTTTACGCCCTACAAGATGCCTGCAATTCACCATCAAC
GCTGGCGTCCGCGCTGCGACCGATTGATTGCTCTGTGCAGGTATTTGATG
GACTTTCTTGTGATGAGGATGCGCCGGCGAGCGATCAAAACGATGGTCAA
GGCCTACCTGCCAACTATTCCTCTGTCCTTCATTCAGGTGAACAATGGCT
CCTGCGACCGCAAAATGTCGCTTCATGATGGACAAGTTCTTGTAGCTTAC
TTTTCTTCTTGTCGTCACTTCAAATCAGCGCTCACAGCGCTTTAACTACC
GGTTGGAAACGGTTGTGCGAGAAGCACGCCACCTCGAACAATCGTAGCGT
GTTACTAGCTCCTTGGATCTACCGGTGTCCCAGGCAAGATTGTGCACGTA
TTGGGACAGGCGACCCATCGATTTCAAAGATGTGCGGTGGTTCTTCGATC
TGTGTTGGTGAGGAAAGATTGGAATCGTAACAGACTTGCCACACTGCTTC
GTGCGCTTGGTTTCCGACGGTATGAGTCATGCTATACATGTATGCTACAA
GTATGCGACAGTCAGGCATGCGGTTTTCGACGGCGCGAGAGTGATAACGG
TAAAGGTATGAGCTCTAGATAGGCCCTCTCCGCCCCCAGTCATGGTAGGC
CTGTTGGCATGGGACAGAAGAGGTCGCCCATTCTAGCTACGTGGGGATGG
CAGTAGCGATGCTGGTGCTCCCTGTTCGGAGTGAAAGTATGGTGTAGTTT
CAAGAGAGTTGCGCCAACAACATTTGCTGTGTTAGTGTTACCGTCGTTCC
ATGATGTTGTATTTGCGTTTTTGCGACGTGTTCTCTGGAAGAACTCGTGT
TTTGACAGTCGACTTCCGTACGCGATCAACATGTTTATGACGAATTGCCG
GTTGTCTTTCGGTTCGCAATGTCTCCTCGGAGCATTTTCTGCGTCTTGGT
GGTTCCCCGACGCCGCTCGCTGTTCCCGATCGTCCTTTGGCAAAGTTGCG
ATACAGCATAAATTAGTCTTTCGTATGTTATACTCGCGAAAGCTTTAGGG
TGTCGAAGCCGTGCCGTTCGGGATCCGAATCTGACTTCCCGTATACCTCT
TTTGCCGCTCTTTGTGTTTTTCAGGAACAGCTCAGGTTCGACAGTCGGGA
CTCGTTGCTGGAGTTCATCGACAAGGACGTCCAGGCGGCTCTTGCCGCAC
CGAAGGCTGGCGAAGAGGCGGCGATAGACGTCAAGGCCACTCGGGCCGCA
TGGGCCAGGTTGTAGGACAGGTTGCCAAGAGTCGAGGGCATGGTACGGCG
TGCGATTGATTTCACACCTGCAGTCGTTGTCGTTCCCAGTCGAAGTCGCG
CACCTTCGACATGGAGCCGAATGGGCGCGGACTGACAGGATGATCAAGTA
CACTATGTAATTGTCGTTGGTGAGGTTTTCGAGTCACAGACACAGGGTCT
GTCCCACGAAGGGAAAAGGGTGCCAAACTTGAGCGATGTTTGTTTTTGGA
GAATATTTGATGGTGCTCTCCGCTCCTGGTGATGGCCGTGGGGGCATCTC
CCCCATGAGAGCTACCGTGCAATGAAGCGGTGCAGACCACGTCATGTCCG
GAGAAGCTTACATTTTCCAGTACTGCTGCACGTGCGGATACGGTGTGTGT
ATAGACTACAAGGCGACACAGCAGGGTGAGCCTGGGGTTGAAGATATACA
TAAAGCGTACCCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:348271..355733+

>mRNA_Ecto-sp6_S_contig92.18417.1 ID=mRNA_Ecto-sp6_S_contig92.18417.1|Name=mRNA_Ecto-sp6_S_contig92.18417.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:348271..355733+ (Ectocarpus species6 EcLAC_371)
ATGTCATCGAAGCCTGGAAAGAAAAAGAGCAAGGCTACTCGTTGGGGAAA
GGCAGCGACGGCGAAACCAGCAGCTGCTGCTGGCGGGCGAGGTGGCATTG
TCGGCATGGAAACAGATGAAGCAAGGAAAATCAGAAACGCCGCAAGATTT
GCGGAACACCTCGGTGGGGGATCGAATTCAAAGCAGCAAGGCAGCGGCAA
GAAGCGATCGCGATGGGCCATGGGCAACGGCAGCGGTAGCAACAGCACGG
ACCCGGTGCGGGGCTCGTCGAGCTCGCTCGAGAAGAGCTACTTCCGTCTC
ACGTCCGCACCCAAGCCTTCGGACGTGCGCCCTCCAGAAATCTTGACGAG
ATCGCTTCGGCACGTGAAGCGGAAGTGGGCCACTGAGGAAGACTACGAGT
TCGTGTGTGACCAGCTCAAGGCTATCCGGCAAGATCTCACCGTGCAGGCC
ATCGAGGACGGCCTGACGGTGGACGTGTACCAGACGCACGGGAGGATAGC
GCTGGAGTCGGGGGACATGGAGGAGTACAACCAGTGCCAGTCGCGCCTGA
AGGAGCTCCACCTCTCCGGCGTGCCCGGCGTGAGCATGGACGAGTTCACC
GGCTACCGCCTCATCTATTCGCTTTACCGCGAGAATCATCGGGAGGTGAA
CGCAACGATGATGGACCTATCGCAGGAGGCGAGGCAAGGGGAAGGCGTGG
CGCACGCGCTGGGGGTCGTGAAGTCCTACCACATGGGGGACTACTGCACC
TTCTTCCGCCTGTACTTCGCCGCCCCGGCCATGAGCTCGTATTTGATGGA
CTTTCTTGTGATGAGGATGCGCCGGCGAGCGATCAAAACGATGGTCAAGG
CCTACCTGCCAACTATTCCTCTGTCCTTCATTCAGGAACAGCTCAGGTTC
GACAGTCGGGACTCGTTGCTGGAGTTCATCGACAAGGACGTCCAGGCGGC
TCTTGCCGCACCGAAGGCTGGCGAAGAGGCGGCGATAGACGTCAAGGCCA
CTCGGGCCGCATGGGCCAGGTTGTAG
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