mRNA_Ecto-sp6_S_contig92.18414.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18414.1
Unique NamemRNA_Ecto-sp6_S_contig92.18414.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: D7FPT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT2_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 2.260e-152
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 1 
Query:  199 MSMTDPSEVRASPTWEGYWSGGISKGDRWDTGVVSPALQKLLDEGVLPKGRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSV-EFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWRFSG*K 882
            MSMTDPSEVRASP WEGYWSGGISKGD+WDTGVVSPALQKLLDEGVLP GRALVPGCGRGYDSIAFGKS YDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSV EFRS DFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLL PEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWRFSG K
Sbjct:    1 MSMTDPSEVRASPAWEGYWSGGISKGDQWDTGVVSPALQKLLDEGVLPTGRALVPGCGRGYDSIAFGKSSYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVVEFRSGDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLRPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWRFSGSK 229
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BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A0A836CD04_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD04_9STRA)

HSP 1 Score: 233 bits (594), Expect = 5.260e-71
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 1 
Query:  214 PSEVRASPTWEGYWSGGISKGDRWDTGVVSPALQKLLDEGVLPKGRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLS-VEFRSMDFFKFSPEQEG-KFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVE--KEGGPPFAVSESIVSDLLEPRGLKAIH-LEKLEPSLCHKTREGKTALGRWRF 870
            P + +  P WE  W+ G+ KGD +DTG VSPALQ+LLD   LPKGRALVPGCGRGYD+IAFG +GYD+ GLDLS TG++ A ALLAE +             KP   V+F   +FF+F  +  G +FDVILDYTFLCALDP+ R  WA  M +LL+P GELVT+IFPI +   EGGPPF V+  ++++LL P GL+A+  L+ L   LCH TRE +T LGRWR 
Sbjct:   10 PQQEQGHPRWENIWAAGLKKGDAFDTGRVSPALQQLLDAQALPKGRALVPGCGRGYDAIAFGAAGYDATGLDLSKTGIQAATALLAETEP------------KPAGPVQFVVGNFFEFGGDGSGGRFDVILDYTFLCALDPSIRQQWAQRMAALLAPGGELVTLIFPIGKPLSEGGPPFGVTLDLLTELLTPVGLEAVEELKMLPDELCHPTREKRTGLGRWRL 221
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BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: F2TX11_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TX11_SALR5)

HSP 1 Score: 207 bits (526), Expect = 1.120e-60
Identity = 107/218 (49.08%), Postives = 140/218 (64.22%), Query Frame = 1 
Query:  211 DPSEVRASPTWEGYWSGGISKGDRWDTGVVSPALQKLLDEGVLPKGRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRW 864
            D +    S TWE  W+ G+  G R+D    +P L+ LLD   LPKGRALVPGCGR Y  + F + GY ++G+DL+ T V+ A+  +     + +  K ++ L     +E R+ +FF    E EG+FDVI DYTFLCAL P AR+ WA  M  LL+P+GELVT+IFPIVEKEGGPP+A+S  +V  LLEP G  A  LE L   +CH+ RE +TALGRW
Sbjct:   30 DKTRAGVSETWEQIWADGLEPGQRFDARGPAPILKHLLDTNALPKGRALVPGCGRAYAPLEFARHGYQTLGVDLAHTAVKAAQEFV-----DSVEDKPKEGL-----LELRAANFF----ELEGQFDVIYDYTFLCALHPNAREKWAAQMHKLLAPQGELVTLIFPIVEKEGGPPYAMSMDLVKSLLEPLGFTATTLEMLPDDMCHRGREERTALGRW 233
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A0A6S9GED5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GED5_HETAK)

HSP 1 Score: 187 bits (475), Expect = 9.200e-53
Identity = 105/225 (46.67%), Postives = 136/225 (60.44%), Query Frame = 1 
Query:  241 WEGYWSGGISKGDRWDTGVVSPALQKLLDEGVLPKGR-----ALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIH-LEKLEPSLCHKTREG--------KTALGRWRFS 873
            WEG W+ GI KGD +D G   PAL +L+ + +LPK       A VPGCGRGYD++A  ++GY  +GLDL+PT VE A   L     E+++G    E     +  F   DFF  S     +FDVI DYTFLCAL P  R  WA+ M S L P GEL+T+IFPI EKEGGPP+A+S  +V DL E  GL+A+  +  L P LC++ R+G         +ALGRWR +
Sbjct:   47 WEGMWANGIGKGDAFDCGTGCPALAELIQQQILPKSENGLSTAFVPGCGRGYDAVALAEAGYTVLGLDLAPTAVEAANRYL-----EEMNGIQNPE----GACSFEEGDFFGVSQ----RFDVIFDYTFLCALPPELRKPWAEKMKSSLKPGGELITLIFPICEKEGGPPYAMSVELVRDLCEGAGLEAVGPVGLLPPELCNRGRDGGPGSMFGASSALGRWRLA 258
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BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A9V7J4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V7J4_MONBE)

HSP 1 Score: 178 bits (452), Expect = 1.510e-50
Identity = 99/186 (53.23%), Postives = 117/186 (62.90%), Query Frame = 1 
Query:  316 KLLDEGVLPKGRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWRFS 873
            ++L EGVLPKGRALVPGCGR Y  +AF + GY + GLDLS T VE+A+ +L EE    + G+A   LG          +FF    E  G FDVI DYTFLCAL P AR  WA     LL+P G L T+I+PI EK GGPPF +S  +V  LLEP G KA  LE L   LCH  REGKTA+G W+ S
Sbjct:    2 QVLKEGVLPKGRALVPGCGRAYAVVAFAQHGYTATGLDLSETAVEEAQQVL-EENRASLQGEATVALG----------NFF----ETTGTFDVIYDYTFLCALHPDARAAWAQQHKKLLAPGGTLFTMIYPITEKTGGPPFQMSIELVQSLLEPLGFKASRLEMLPDELCHPGREGKTAIGLWQLS 172
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A0A812Q7L8_9DINO (HOL3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812Q7L8_9DINO)

HSP 1 Score: 166 bits (420), Expect = 6.650e-45
Identity = 101/228 (44.30%), Postives = 127/228 (55.70%), Query Frame = 1 
Query:  217 SEVRASPTWEGYWSGGISKGDRWDTGVVSPALQKLL---DEGVLPKGRALVPGCGRGYDSIAFGKSGYDSI-GLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREG----KTALGRWRFSG 876
            ++  ASP WE  W+ G+   + +D G  SP L ++L     G     RALVPGCGR YD+IA  + G+DS+  +DL+PT V+ A+  L        S            +E    DFFKF  E E K DVI D TFLCALDP+ R DWA  M +LL+P G L+T IFPI EKEGGPPFA+S  +V  LLEP G +A  +   E +  H    G     TALGRW   G
Sbjct:   33 TDAGASPMWESMWARGLRPKEAFDCGEASPTLTEVLRLKSLGDCTGKRALVPGCGRAYDAIALAEYGFDSVVAIDLAPTAVDAARDFLKASSSPAAS-----------KIEVACADFFKF--ELEPKVDVIWDCTFLCALDPSVRTDWAKKMKALLNPGGTLLTCIFPICEKEGGPPFAMSVPLVRGLLEPEGFEAAEVR--EDAQKHTAGGGAFSANTALGRWILKG 245
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: L1IP07_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IP07_GUITC)

HSP 1 Score: 166 bits (420), Expect = 1.110e-44
Identity = 99/232 (42.67%), Postives = 129/232 (55.60%), Query Frame = 1 
Query:  208 TDPSEVRASPTWEGYWS--GGISKGDRWDTGVVSPALQKLLDEGVLP-------KGRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEE-KEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEG-KFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWRF 870
            T P+ +     W+  W   GG+  G  +D    SP L +L+ E  +        K  ALVPGCGRGYD   F K G++ +GLD+SPT V+ A+     E K   +S             +F + DFF      EG KFDVI DYTFLCA++P  R  WA+ M  LL P GELVT+IFP+  +EGGPP+A+S  +V++LLEP G    +LE +     HK R GK ALGRWR 
Sbjct:   41 TRPTPIVEMTGWDDMWKRDGGLKPGQYFDACKSSPVLLELIQEWKVKYADYSNGKPDALVPGCGRGYDVCEFAKIGFNGLGLDISPTAVKAAEEFNESELKSAGVSAWKG-------DAKFSTDDFFTL----EGRKFDVIYDYTFLCAIEPNMRKSWAEKMKQLLKPGGELVTLIFPLETREGGPPYAMSIDLVTNLLEPEGFVCDYLESVPEGKSHKGRGGKEALGRWRL 261
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A0A7S0HD03_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HD03_9CRYP)

HSP 1 Score: 160 bits (405), Expect = 2.380e-42
Identity = 98/229 (42.79%), Postives = 127/229 (55.46%), Query Frame = 1 
Query:  214 PSEVRASPTWEGYWS--GGISKGDRWDTGVVSPALQKLLDEGVLPKGR-------ALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEG-KFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWRF 870
            PS V     WE  W   GG+  G  +D    S  L  L+ E  +  G        ALVPGCGRGYD   F K G++++GLD+S T V+ A+     E E   SG +  +     S +F + DFF      EG KFD+I DYTFLCA++P+ R  W   M  LL P GEL+T+IFPI  +EGGPP+A+S  +V +LLEP G    +LE +     HK R GK ALGRW+ 
Sbjct:   55 PSPVIEMTGWEDMWKRDGGLKPGQYFDACKSSRVLLDLIQEWKVKYGDQNEGMPDALVPGCGRGYDVSEFAKIGFNALGLDISQTAVKAAEEY--NESEMKRSGVSAWK----GSAKFSTDDFFTL----EGRKFDIIYDYTFLCAIEPSMRKPWVTRMKKLLKPGGELITLIFPIESREGGPPYAMSIDLVKNLLEPEGFVCEYLEPVPEEKSHKGRGGKEALGRWKL 273
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A0A7S1HEK2_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEK2_HEMAN)

HSP 1 Score: 159 bits (401), Expect = 5.710e-42
Identity = 94/249 (37.75%), Postives = 134/249 (53.82%), Query Frame = 1 
Query:  136 PNIPAVTRGGIITLRSCTTTNMSMTDPSEVRASPTWEGYWSGGISKGDRWDTGVVSPALQKLL----DEGVLPKGRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKE-GGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWR 867
            P I A TR        C +++ +    S       WEG W+ G+  GDR+D    S +   +L    D     K RAL+PGCGRGYD +   +  +D++GLD+SPT V+ A+A    + + ++ G+A          EF + DFF   PE  G FD++ DYTFLCA+DP+ R  WA+    L+ P GELVT+I+PI  K+  GPP+A+   +V  LLEP+G     +  +  +  H  REG   L RWR
Sbjct:   28 PPIKAHTR--------CASSSAATATMSSKEEQSMWEGMWAAGLKPGDRFDKSKSSQSFLDVLASWQDTAKAKKVRALIPGCGRGYDVVEAARFNFDALGLDISPTAVQAAQAY--RDSQGELGGRA----------EFSTTDFFTL-PEP-GAFDLVFDYTFLCAIDPSTRSAWAETHKRLIKPGGELVTLIYPIRPKDDNGPPYAMDTELVRGLLEPQGFVCESMVPVPHAKSHPGREGMEVLARWR 254
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Match: A9V8N0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V8N0_MONBE)

HSP 1 Score: 158 bits (400), Expect = 5.720e-42
Identity = 93/214 (43.46%), Postives = 125/214 (58.41%), Query Frame = 1 
Query:  241 WEGYWSGGISKGDRWDTGVVSPALQKLLDEGVLPK---GRALVPGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLS--VEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKLEPSLCHKTREGKTALGRWR 867
            WE  W  G+    ++D G   PAL+ LL +  +P+    RALVPGCGRGYD     + G+   G +LS T  + A+  +    +E  +  A      PL+  +    MDFF+  P  + ++D+I DYTFLCAL P +   WA  M +LL P G LVT+IFPIV+KEGGPPFA+S  +VS LL+ +  +  HL  L  S C+K REG TALG WR
Sbjct:   38 WETVWQEGVRPLGKFDAGGPCPALEILLAQDDVPRHPEARALVPGCGRGYDLPVLARHGFHVEGWELSETAAQVARDYI--NSQEHATPDA------PLTGTMSVARMDFFE--PTSDQQYDLIYDYTFLCALHPDSHQAWARQMRALLRPGGLLVTVIFPIVDKEGGPPFAMSMELVSGLLQGQNFECQHLAMLPDSSCNKGREGITALGLWR 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPT2_ECTSI2.260e-15296.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CD04_9STRA5.260e-7154.91S-adenosyl-L-methionine-dependent methyltransferas... [more]
F2TX11_SALR51.120e-6049.08Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6S9GED5_HETAK9.200e-5346.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A9V7J4_MONBE1.510e-5053.23Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A812Q7L8_9DINO6.650e-4544.30HOL3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
L1IP07_GUITC1.110e-4442.67Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0HD03_9CRYP2.380e-4242.79Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S1HEK2_HEMAN5.710e-4237.75Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A9V8N0_MONBE5.720e-4243.46Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:317120..322985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score438.7
Seed ortholog evalue2e-120
Seed eggNOG ortholog2880.D7FPT2
Model size1369
KEGG koko:K21552
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008757,GO:0009056,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016020,GO:0016143,GO:0016145,GO:0016740,GO:0016741,GO:0018708,GO:0019748,GO:0019757,GO:0019759,GO:0019760,GO:0019762,GO:0031967,GO:0031975,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658
Exons5
EggNOG free text desc.Thiol methyltransferase
EggNOG OGs28JNP@1,2QS1V@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-18_001620.1
EC2.1.1.165
Cds size819
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18414.1prot_Ecto-sp6_S_contig92.18414.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 317180..322495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350561.6968973-UTR-Ecto-sp6_S_contig92:317119..3171791682350561.6968973-UTR-Ecto-sp6_S_contig92:317119..317179Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 317120..317179 +
1682350561.7519183-UTR-Ecto-sp6_S_contig92:322495..3229851682350561.7519183-UTR-Ecto-sp6_S_contig92:322495..322985Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 322496..322985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350561.7098355-CDS-Ecto-sp6_S_contig92:317179..3174501682350561.7098355-CDS-Ecto-sp6_S_contig92:317179..317450Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 317180..317450 +
1682350561.7180316-CDS-Ecto-sp6_S_contig92:320934..3211341682350561.7180316-CDS-Ecto-sp6_S_contig92:320934..321134Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 320935..321134 +
1682350561.7256145-CDS-Ecto-sp6_S_contig92:321381..3214671682350561.7256145-CDS-Ecto-sp6_S_contig92:321381..321467Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 321382..321467 +
1682350561.7334554-CDS-Ecto-sp6_S_contig92:321774..3218771682350561.7334554-CDS-Ecto-sp6_S_contig92:321774..321877Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 321775..321877 +
1682350561.7414894-CDS-Ecto-sp6_S_contig92:322336..3224951682350561.7414894-CDS-Ecto-sp6_S_contig92:322336..322495Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 322337..322495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18414.1

>prot_Ecto-sp6_S_contig92.18414.1 ID=prot_Ecto-sp6_S_contig92.18414.1|Name=mRNA_Ecto-sp6_S_contig92.18414.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=273bp
MRHCSSLKGWVGLLCLPRPIYPFAVPNIPAVTRGGIITLRSCTTTNMSMT
DPSEVRASPTWEGYWSGGISKGDRWDTGVVSPALQKLLDEGVLPKGRALV
PGCGRGYDSIAFGKSGYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQ
ELGKPLSVEFRSMDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHM
VSLLSPEGELVTIIFPIVEKEGGPPFAVSESIVSDLLEPRGLKAIHLEKL
EPSLCHKTREGKTALGRWRFSG*
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mRNA from alignment at Ecto-sp6_S_contig92:317120..322985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18414.1 ID=mRNA_Ecto-sp6_S_contig92.18414.1|Name=mRNA_Ecto-sp6_S_contig92.18414.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5866bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:317120..322985+ (Ectocarpus species6 EcLAC_371)
CACGGCAGCAGCAACGCACATCCCACACACGGCAGCAGAAACACACACCT
CACACGCTGAATGCGGCACTGCTCTTCTCTAAAAGGCTGGGTAGGTCTTC
TGTGCTTACCACGCCCGATCTACCCATTCGCAGTGCCGAACATCCCTGCT
GTCACGCGTGGCGGAATCATCACACTCCGAAGTTGCACCACCACCAACAT
GAGCATGACTGACCCCTCAGAAGTTCGAGCATCTCCAACTTGGGAGGGTT
ACTGGTCTGGAGGGATCAGCAAGGGTGACCGGTGGGATACTGGGGTTGTT
TCCCCGGCTCTCCAAAAGCTTCTTGATGAAGGTGAGACGACATTGTTCTG
ACTGACGAGCTGTGTACACAGACACAGCAGTCGAGACCGGCAAGACCAAA
CGTCCATCTCCCTGATGACATTCATTTTGAAGCCTCAACCATCGGTGAGG
CACCACCTATGGGACGTCCCTCGCTGCTCGTGTCCGACACACAGCAGTGC
ATCAGTACATTGCATGGGACAGAAAGGCTGCCCGTTCCCGAGCTTCGCGT
CTGGTGCTCAAAACACCTGCTTTGTGTTACTGATGACACCCACACGTGCC
TTTGTCCTCGGTCAGACCAAGACCCAGGAAGATATGCCTGTGGGCGCTCG
CGTAAGCCGTATTGACCATGGCCCCTTGGAGCCTGTCGGGGCAAGCGAGT
CATATGTCAGATATATACTACTGCTGCTGTAGACTGGTAGGAAGTTGAGA
TACAGATGTGATGAAAAAAATAGTCATAAGACAAGCCTGCGGGAATGTCG
CATGTTCCTGACGATGATCTGCGAACGGCGTTGTACATTTGTAAAACAAG
AGAAACCACTTTCTTTCGAGGCCACCAGTCATGGCGTTCAGATTCATGCC
GTGCCGGTGCTACTTTGCCGCTTCCGTCTCGTCTATGTGCTGCATATGAT
AGTGCAGGAATACTAGATTCAAAGGGCGGGGTTATGAGTCGCGGGGGACG
ACTTACTGTACATCAGTGTACAGCAGACCTTTCTGAATACGTAGACTAGT
ACTCCGCATGTGGAATGTGTGCGATGTTAACCCTTTTGGGTCTTCAGGTG
TTCTGATATATCATTAATATATCATTCGCATATGCTGGTGTGTTGGCATG
CCATGGAGTTGCCGCCCTGTATCCCTTTGACGCCAGGTGTTGGCAAGTCC
ATAGGTATGCATAGGTGTGTCTTTATTGTTAGCATCGACCGAGGTCACCG
GTGACCAATGAAAAGACGTCAGTGCCAGCTGGAAAATCAAGGTCCCTGGC
AGGGTATGCATACCAAAATGCGGAAATGCACATTGCGCTATATGCGAATG
CCACAGTGTACCTCTCGAACTAAATATCCTTTCACAGAGACACACATCAC
AGCTCCACATACGTGCCCTCACCCATATCTATGAAGCCACTGAAAGGCTA
AAAGCGGGGTGCAGCAAACGGGGCCTGTCAAGCCCAGCCCAACCAGGATA
TCCTGGTATGCTGCATGTTCAAATTTGATAATCGTACACTCCCAAGATCT
AGCAGTCATCGTGTCAGCACCTACACGTATGACTCGACCATCAAGCTCCA
CACATATCCTCGCCCGAACCTAGGGAGCCGTTCAGAAGAAGGTAGGTGTG
TGCTGTAGTGCTTGtGTGCTGGTGGGAAAAACACAGGAGCTCTAGTGACC
CGGCAGGGCTCACAATGGGTGGGGGGGGCAGAGAAGTACAGAAGTGCAGA
TACCGGCTATAGGTCTACAGGCCCTCTCATAGACCATTTCATCATACTGA
AAATAGAGTAGTTTTGGCAGCTTGACGACTGATCATTTCAAGGcctaCCT
ACAAGTCTAACCTACCAGCCGCACCGCGACCACCCATCAACCCTTCTATG
GCCCTGTCTGTGGCCACCACCCTGTCGCGGGCTGCCCTCATGGACTATAG
GTGGAGATAGCCGTCTTTTGCTGCACTtcTCTCTCTCTCTCTCTCCGCAC
TGCCTCCTGCCTCTTTTTAGTTTTTGACCGAAAAAAAAAACAGTACAGAC
CCAAAGGGGTTAGACGCGGTAGAGCCCCGCCCACCTATCTGGGTTCACAA
GGCACAGGTATGCGACGGGCGCGACGAGGAGATGCTTGCACACATCAGAT
CCCCACAGATCAAGCCATGTAGTTCTTTCGAAGGGTATGCCCCTTGTGAT
CAGTACAACAAATGTAGGCGATCTGTTTACTTTTGCCCGAGTGATCGAAG
GGACGCAGGTGATAGGGGTAAGTTTGCCCCAGGTGGTCTGAAGGACATAG
GTCATCGGGGCAAATTTGCCCGTGATGATCTTAAGGACATCAATGATCGG
GGTATGTTTTCCTGAGGTGATCTGAAAGACATTGGTCTGTGCACCGCTAA
CGACACAAGAAACATCCCCACGCAAGGTGATTGGTGTATGTTTTCCCGAG
GTGATCTGAAGGACATACGTGATGGGGGTAAGGTGATCTGAAGGACACAG
GTGATCGGGCCGACGGGGGAGGCGGGCCCTAAATTACGGTTTGTACTGCG
GTTGTTTGTTTTCCGTTGATCTCAAGCACTaaAGTACGAGAGCATGTCGT
CTTTCCGCCGTGAGCAAATAAAATTCGGACGCAAATAACACGTACCGGGA
AGAGACATGGGATGCTGGATATAGCTGCCGACAAGCAAATCACACCGCTG
CAGAGCGCCAGCAGCAGCGTGGGCATGGCATCGTGACATCGTGACAGATA
GATGTGGCAGGCTCACAACTTACCCCAACCTAAACTCAATCGTCACTACC
CCGCCGATTTTCCCGCAGAGTGACAGCTAGCAGTCAACACTAGTTCCCAA
GCACCAGAAAAAGTCGGGGACGTGATTTTCAAGCAGGCAGGTGGGCTTGC
CCCAACTTCACGTTTGTCTTGGAAGACAGTAACGCAGCGTATGCAACCTC
ATGGATCGATCCTAGGCAAAAAATCTTTAGAACGCGCACAGCAGTTGAGG
CTCACGCCCTCGAAGGCTTCTCTCGATCCGTGTCCAACAGCGTGAACGGT
AGTCAGATCGTGTACATGGTGTGTATGTTGAGGGTGTGATCTCACCGCTC
TTTGTTGAGCAGTCGGTCGGACCCACGCAACAACCCCAACAACGCCACAA
ACCCGCTAAGTAACACGTGGCGCATGGCTATACCCACGACGCGCAGGTTG
ATTTGGCTCGGCCCCGGCTGTTTTTGATAGCTGGCCTCGGATCTGTGGGG
GATAGGCATGCGTTCCAGCGTTGTGTGTGGGTTGAAAGGTGTGTGAGATC
TCCGCTTTGTGTTCCCCATTTAACTTGACAACTCCCGGGGTTAGGGGGAG
GTAGATTACAACGACGAATATTCGGGACAAATACCTGCGAAGCACGGCCA
TCTCTTGATGGAGCACCACCAAACCGGTACGACGAAGAGTGCCCTGTTTT
CCTTCCTCCTCAGAATCCAGCGGTGCTCTGCAGATCTTGTTCTGGTCGAA
AAGGAGGGTCGCGCGGTAACCAATTTTGGGCCTCTTCATCGTGTCGGAAG
AGGTCGATATTTCGGGCTTGTCCACCTCCCCCTGAAGATGGAGGCAATAA
AACGTCGCGGCTGCGCCGCTCCTCGGCTCGTTTGAAGACACCGAAGAAGT
CATCGGCAAGAAGCACGTGGGCTCGGTATCTCGGACGCCTGGGCACAGAG
TGGTCTCCTTTGCGAATCATGGCACACAAGCTACAAACAGAATGCGGTGT
GGCTTCCCTGCTGTCTCTCCCTCCATACTAACACCTCGTATTCACCACGG
TGGTCTCTCGTGCAGGCGTGCTCCCGAAGGGACGTGCGCTTGTGCCTGGT
TGCGGCCGTGGGTACGATTCCATCGCTTTTGGTAAGAGTGGCTACGACTC
GATCGGTCTCGACCTGTCGCCGACCGGAGTGGAACAAGCGAAGGCTCTGC
TAGCGGAGGAGAAGGAAGAGGACATAAGCGGAAAGGCGAGACAGGAGCTG
GGCAAACCCCTAAGTGTAGTGAGCATGGATGGGATTATCTCTTTCGTGTG
TTCGGTTGAAGCAATCCCGAGATACAGATACTCGTTTTCGACGCAAAGAC
GTTTGCCAGCTGGCACAAGACACGACGGGGTAACCCGCAGAAGTTCGTAC
GTTTTGTGTATCACCGTGCGGCGTCACAGTGCAGCAGATCCACTGATTGC
TAACCAAGGGATCACCTGGCGATATTGTGTGCGTAACTTACGCCCCGCCC
CATTTTTCACAGGTTGAGTTCCGGTCAATGGATTTCTTCAAGTTCTCTCC
CGAGCAGGAGGGGAAGTTCGACGTTATCTTGGACTACACGTTCCTCTGGT
GAGCGAGCGAGGTGCTTCCTGCCCGACTGCCTTTTAGATCGGTAGCAGCT
GAAGACGGCCGCGTTGTGTGTGCAGGAAGGCGTGTGCCTACACCGTGATG
CCCCCTTAACAAGTGGAAACCGTTACCAACACGTATCATCTGCACTCTCC
GACACCTGTCGGGTGTCACACGGGACGACGATACAGCGCGGATGGGCCCA
ATAGCAAGCCATCACGACACCTGACGATTTTTAATAACGATGCTGTCTGT
CTTAGTATGCAGTGTTTACCCCTCGATCGCTGGTGCTGAATACGCATTCT
CTCAGTGCGCTTGACCCGGCTGCCCGGGACGACTGGGCCGACCACATGGT
ATCGCTGCTAAGCCCTGAGGGGGAGCTCGTGACCATCATATTTCCGATCG
TGGAAAAGGTGCGAAGGGACGCAGAAAAAAGCATGGAGTATGTTTTCTAG
ACTCCAACGGCACCGGAAGTGTTGGTGTGTTCCTTTTGTGATTTCGTGCG
GTTGGTTTTAGTGGCGAGGTTCTTTTAACCGTCCTTCTCGTCGAGCCTAA
TCTCGCATGCGACAGCTTTAGCCGTGTGCTTTGTACCAACCGGTTGACGT
TGAGCACATCTGACGCCCTCAACGGTAACTGATGCCGCGGTGCGACTTGG
GCAGTGTATGGGCTTTACGCTCAGCAGTAGTTGGAGTTGTGCGATTCTGT
GGTTGAAGTTGTGCATCGTGTGTAACGCAGGTCGGGGAATCTGGCTCGGC
GAGGGTAGGTCGTAACCATGACGTGCCGTGCTTCCTTCGACTAGCAGCCG
CTTGATTATAAACCAACGACAAGCAACGTCTTCTGCTTCTCTTCTTCCTT
ACCATCGTGGACAACAGGAGGGCGGGCCACCGTTTGCCGTGAGCGAGTCG
ATCGTGTCGGACCTCCTCGAGCCTCGAGGACTAAAGGCGATACACCTCGA
AAAGCTCGAGCCTAGCCTTTGTCACAAGACGAGGGAGGGGAAGACCGCTC
TTGGGCGCTGGCGTTTCTCCGGATGAAAGTAGATGCCAGTCAGGTTACTC
TGGTTGTTATGGGGGAGGGCTTCGTGACGTATATGCCCACGTGTGGGTCA
CTATTGTGACATTTGTTTCTTTCGTCTAATCTCGGGGCTTGTTTTGACGG
TCGCGAACAACGATTTTGTGTGTGGTGGAAAATCCGTAAGCCGAAAGGTT
GGTAGTAGTACAGGTCGAGCACTAAAGTACTAAAGTATTAAAGTGAGACT
GGTTGGAACTTCAAGTTTGTAGATAGCGCTTTTTCCCCTCCGGAACTGGG
GGGTACACCACGGACGTCGTTTTGGGGTTACCGGCGCCAGCCGTTCGTCG
GCCTAGTGCCGACGTACAACGGGGGCGCCACTTCTGCACCGGGAGCGGCG
GCTTTGACCAGAGCTGCGACCGCAGGAGCGGCGCCACCGGGGGCGGCGAC
GGCGGCGCAAGCGGGGATGGCAGGGCGCGCTACCGGGGGGGGGAGTCTAC
CCTTCCCTGTCTGTTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:317120..322985+

>mRNA_Ecto-sp6_S_contig92.18414.1 ID=mRNA_Ecto-sp6_S_contig92.18414.1|Name=mRNA_Ecto-sp6_S_contig92.18414.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:317120..322985+ (Ectocarpus species6 EcLAC_371)
ATGCGGCACTGCTCTTCTCTAAAAGGCTGGGTAGGTCTTCTGTGCTTACC
ACGCCCGATCTACCCATTCGCAGTGCCGAACATCCCTGCTGTCACGCGTG
GCGGAATCATCACACTCCGAAGTTGCACCACCACCAACATGAGCATGACT
GACCCCTCAGAAGTTCGAGCATCTCCAACTTGGGAGGGTTACTGGTCTGG
AGGGATCAGCAAGGGTGACCGGTGGGATACTGGGGTTGTTTCCCCGGCTC
TCCAAAAGCTTCTTGATGAAGGCGTGCTCCCGAAGGGACGTGCGCTTGTG
CCTGGTTGCGGCCGTGGGTACGATTCCATCGCTTTTGGTAAGAGTGGCTA
CGACTCGATCGGTCTCGACCTGTCGCCGACCGGAGTGGAACAAGCGAAGG
CTCTGCTAGCGGAGGAGAAGGAAGAGGACATAAGCGGAAAGGCGAGACAG
GAGCTGGGCAAACCCCTAAGTGTTGAGTTCCGGTCAATGGATTTCTTCAA
GTTCTCTCCCGAGCAGGAGGGGAAGTTCGACGTTATCTTGGACTACACGT
TCCTCTGTGCGCTTGACCCGGCTGCCCGGGACGACTGGGCCGACCACATG
GTATCGCTGCTAAGCCCTGAGGGGGAGCTCGTGACCATCATATTTCCGAT
CGTGGAAAAGGAGGGCGGGCCACCGTTTGCCGTGAGCGAGTCGATCGTGT
CGGACCTCCTCGAGCCTCGAGGACTAAAGGCGATACACCTCGAAAAGCTC
GAGCCTAGCCTTTGTCACAAGACGAGGGAGGGGAAGACCGCTCTTGGGCG
CTGGCGTTTCTCCGGATGA
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