mRNA_Ecto-sp6_S_contig92.18410.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18410.1
Unique NamemRNA_Ecto-sp6_S_contig92.18410.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:286124..286984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size861
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001650.2
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350557.196968-UTR-Ecto-sp6_S_contig92:286123..2864481682350557.196968-UTR-Ecto-sp6_S_contig92:286123..286448Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 286124..286448 +
1682350557.2140095-UTR-Ecto-sp6_S_contig92:286982..2869841682350557.2140095-UTR-Ecto-sp6_S_contig92:286982..286984Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 286983..286984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350557.2060838-CDS-Ecto-sp6_S_contig92:286448..2869821682350557.2060838-CDS-Ecto-sp6_S_contig92:286448..286982Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 286449..286982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18410.1prot_Ecto-sp6_S_contig92.18410.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 286449..286982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18410.1

>prot_Ecto-sp6_S_contig92.18410.1 ID=prot_Ecto-sp6_S_contig92.18410.1|Name=mRNA_Ecto-sp6_S_contig92.18410.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=178bp
MRSGKSRSSHRAVFSVYGGGGGRGRLPRLPATLIATLAQSVNEEVFMLAG
GVLGSHLRMTNYRRLSWFLDDACCDFFCTVVLVCLSVGVFPGPTADHSSA
VFFFLKSFLTNVRMYAQAFPAVARGGHAGSTCHTKTGVTHAYLLPVLPNI
FALCTSFAISFFSCGTIQATGEGGGGD*
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mRNA from alignment at Ecto-sp6_S_contig92:286124..286984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18410.1 ID=mRNA_Ecto-sp6_S_contig92.18410.1|Name=mRNA_Ecto-sp6_S_contig92.18410.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=861bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:286124..286984+ (Ectocarpus species6 EcLAC_371)
GGATTCCTCATACAATGTATCCTCGCACGCTCGTCCGCCTGTGCATTTGT
CGAAAATGCAGGGCGTTCACCAGGGCACCAAATCGTTTTTTCTTGGGAGG
GTACGGATAGAACGCATGGGTATGTGTCTCTACAGCTGGAGATGGCGTTG
GTCCCTCTTTTGATGCTCTTGGCAGACGCGTCTTTTGTTCAACGACCCCG
TTCTATTTGCCCAGTCACTACCATAACAGGGTAGTAAGCACCCGGCGCAT
GCTTCTTGCGCCACGCGGCCTTTCGGCAGTAGGTTTTCTGTGTTGGTCGG
CGTACTGTAGTGGGAACACACCTTGATGAGGTCAGGCAAGAGCCGCAGTA
GTCACAGAGCAGTTTTTTCCGTGTACGGGGGAGGAGGAGGGAGGGGGCGC
CTCCCGCGGCTTCCCGCTACCCTCATTGCTACTCTCGCGCAAAGTGTGAA
TGAAGAGGTTTTCATGTTGGCGGGTGGCGTTTTGGGCTCACACCTGCGTA
TGACAAATTATCGTCGACTTTCATGGTTTCTTGACGATGCCTGTTGTGAT
TTTTTCTGCACCGTGGTGCTTGTGTGCCTGTCTGTGGGCGTTTTTCCCGG
TCCGACGGCAGATCATTCGAGTGCTGTTTTTTTTTTTTTGAAATCTTTTT
TGACCAACGTGAGAATGTACGCCCAAGCTTTTCCTGCTGTGGCAAGGGGG
GGTCATGCGGGAAGCACATGTCATACCAAGACGGGCGTCACACATGCCTA
TTTGTTGCCTGTCTTGCCGAATATTTTTGCCCTATGCACCAGTTTTGCCA
TCTCTTTTTTTTCTTGTGGTACTATACAGGCAACGGgggaaGGGGGGGGG
GGAGATTAACC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:286124..286984+

>mRNA_Ecto-sp6_S_contig92.18410.1 ID=mRNA_Ecto-sp6_S_contig92.18410.1|Name=mRNA_Ecto-sp6_S_contig92.18410.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:286124..286984+ (Ectocarpus species6 EcLAC_371)
ATGAGGTCAGGCAAGAGCCGCAGTAGTCACAGAGCAGTTTTTTCCGTGTA
CGGGGGAGGAGGAGGGAGGGGGCGCCTCCCGCGGCTTCCCGCTACCCTCA
TTGCTACTCTCGCGCAAAGTGTGAATGAAGAGGTTTTCATGTTGGCGGGT
GGCGTTTTGGGCTCACACCTGCGTATGACAAATTATCGTCGACTTTCATG
GTTTCTTGACGATGCCTGTTGTGATTTTTTCTGCACCGTGGTGCTTGTGT
GCCTGTCTGTGGGCGTTTTTCCCGGTCCGACGGCAGATCATTCGAGTGCT
GTTTTTTTTTTTTTGAAATCTTTTTTGACCAACGTGAGAATGTACGCCCA
AGCTTTTCCTGCTGTGGCAAGGGGGGGTCATGCGGGAAGCACATGTCATA
CCAAGACGGGCGTCACACATGCCTATTTGTTGCCTGTCTTGCCGAATATT
TTTGCCCTATGCACCAGTTTTGCCATCTCTTTTTTTTCTTGTGGTACTAT
ACAGGCAACGGgggaaGGGGGGGGGGGAGATTAA
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