mRNA_Ecto-sp6_S_contig92.18405.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18405.1
Unique NamemRNA_Ecto-sp6_S_contig92.18405.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A6H5KZX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX5_9PHAE)

HSP 1 Score: 570 bits (1468), Expect = 5.170e-203
Identity = 290/321 (90.34%), Postives = 295/321 (91.90%), Query Frame = 1
Query:   49 MANPTQPGIKVINKDFKRDDNDTVLCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRACKAEGFSLQTVYRAAPSAPAPVELYEFSKGVFRGEAVAVVESDGGTEGGDGKGKPMEGEGGGALEVVDGGAVSPGAGSKSTAR 1011
            MANPTQPGIKVINKDFKRD NDTVLCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQA+VGATVVELGCG+                   DELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLAS+ERSG  PGEAE EPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVP+FLRAC+AEGFSLQTVYRAAPSA A VELYEFSKGVFRGEAVAVVESDGG EGGDGKGKPMEGEGGGALEVVDGGAVSPGAGSKSTAR
Sbjct:    1 MANPTQPGIKVINKDFKRDVNDTVLCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQALVGATVVELGCGMF------------------DELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASMERSGTVPGEAEGEPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPDFLRACEAEGFSLQTVYRAAPSASAQVELYEFSKGVFRGEAVAVVESDGGMEGGDGKGKPMEGEGGGALEVVDGGAVSPGAGSKSTAR 303          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: D7FPU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU0_ECTSI)

HSP 1 Score: 566 bits (1460), Expect = 6.840e-202
Identity = 284/288 (98.61%), Postives = 285/288 (98.96%), Query Frame = 1
Query:  148 FDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRACKAEGFSLQTVYRAAPSAPAPVELYEFSKGVFRGEAVAVVESDGGTEGGDGKGKPMEGEGGGALEVVDGGAVSPGAGSKSTAR 1011
            FDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSG APGEAE EPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRAC+AEGFSLQTVYRAAPSAPAPVELYEFSKGVFRGEAVAVVESDGG EGGDGKGKPMEGEGGGALEVVDGGAVSPGAGSKSTAR
Sbjct:   10 FDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGTAPGEAEGEPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRACEAEGFSLQTVYRAAPSAPAPVELYEFSKGVFRGEAVAVVESDGGMEGGDGKGKPMEGEGGGALEVVDGGAVSPGAGSKSTAR 297          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A836CJX9_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.420e-45
Identity = 101/214 (47.20%), Postives = 122/214 (57.01%), Query Frame = 1
Query:  214 SGACWAGTVVWPAALDLCDYMSEH-LRQAMVGATVVELGCGIGVPGMVARLLGATVVLTEQDELLSLLDRNLDGNF--AGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRR--STRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRACKAEGFSLQTVYRAAPSAPAPVELYE 840
            +GACWAGT+VW AALDL DY+S H   Q   GATVVELGCGIGVPGMVA LLGA+ VLTEQ ELL LL RNL  NF  A     +   RR    +   A  D               A  +P A +R        DF+L ADC++EPLYG+SWKAL   +  L    T  L  VERR  DG+  FL A +  G  + T+  A+ ++  P+ELYE
Sbjct:   30 AGACWAGTIVWQAALDLSDYLSRHHAGQLAGGATVVELGCGIGVPGMVAHLLGASAVLTEQAELLGLLRRNLAANFGVAHASASQVSSRRRTAPFISAAQLDW--------------ATDDPRALLRDHFEGAHPDFILSADCIYEPLYGESWKALVTALRGLCGPHTRALVCVERRTADGINGFLDAARGAGLEV-TLPHASGASGVPIELYE 228          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A2R5G0X5_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0X5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.430e-38
Identity = 96/234 (41.03%), Postives = 124/234 (52.99%), Query Frame = 1
Query:  151 DGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGAT-VVLTEQDELLSLLDRNLDGNFAGH-PRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLS--DAGTTVLCSVERRGVDGVPEFLRACKAEGFSLQTVYRAAPSAPAPVELYE 840
            DG  L+L  ++   E + PIFSGACWAGTVVWPAAL LC+++ + +   +    V+ELG G+GVPGMV +LLGA  V+LTEQD L  LL RN+D NFA   PR       + LDWE                        EP           D +L +DCV++ LYGDSW+ALA  +  LS     T  L ++ERR  DGV EFL  C+  G   + +          +ELYE
Sbjct:   98 DGKMLELELTFPE-ESIQPIFSGACWAGTVVWPAALLLCEHL-KTMADTVKDQRVLELGSGLGVPGMVCQLLGAKEVILTEQDPLPELLRRNVDANFANDAPR----PLVDTLDWE------------------------EPEESSTNAQEPFDLILISDCVYQELYGDSWRALADCIKALSRPKRATLTLNALERRKADGVDEFLAYCREIGVCHKRIQTLMGPENEQLELYE 301          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: F0X125_9STRA (Uncharacterized protein AlNc14C546G12115 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X125_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.890e-37
Identity = 97/260 (37.31%), Postives = 132/260 (50.77%), Query Frame = 1
Query:  109 NDTVLCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEH----LRQAMVGATVVELGCGIGVPGMVARLLGA-TVVLTEQDELLSLLDRNLDGNF------AGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTT--VLCSVERRGVDGVPEFLRACKAEGFSLQTVY-RAAPSAPAPVELYEFS 846
            ND     + VEV  +G T          EE+AP+FSGA WAGTVVW AA+ L  Y   H    LR  +    V+ELG GIGVPGM AR+ GA +V+LTEQ++L+ L+ RNL GN       A + + E  I    L W +E+  + L+                       +  ++DFVL  DC+F PLYGDSWKALA  M  + +      V  SVERR  DGV  FL    +    +  +  ++  SA   +E+Y+ +
Sbjct:   23 NDDTKLNESVEVLVNGTTKLTLSLLLKEEELAPLFSGAAWAGTVVWDAAIYLARYFLHHYGAILRDKLRSIRVLELGAGIGVPGMAARIAGAESVILTEQEDLVDLMHRNLKGNANALGLDAANDKKEQAIVGRVLSWGKESIHNYLMTY---------------------QDEQIDFVLSCDCIFVPLYGDSWKALAITMQAICETNPQCCVFLSVERRKEDGVDSFLEYIASRTILISKLLEKSIASAENLLEIYQLN 261          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A024FZ75_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ75_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.110e-36
Identity = 92/229 (40.17%), Postives = 118/229 (51.53%), Query Frame = 1
Query:  109 NDTVLCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEH----LRQAMVGATVVELGCGIGVPGMVARLLGA-TVVLTEQDELLSLLDRNLDGNFAG---HP---RGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGT--TVLCSVERRGVDGVPEFL 756
            +D+    ++ EV   G T          EE+AP+FSGA WAGTVVW AA+ L  Y   H    LR A+    V+ELG GIGVPGM AR+ GA +V+LTEQ++L+ L+ RN+  N      HP   + E  I    L W +E+    L                           ++DFVL  DC+FEPLYGDSWKALA  M  + +     +V  SVERR  DGV  FL
Sbjct:   14 HDSTNLNEKAEVLVFGTTKLTLSLLLKEEELAPLFSGAAWAGTVVWDAAIYLTRYFLHHYGTELRNALRSTRVLELGAGIGVPGMAARIAGADSVILTEQEDLVDLIHRNIKSNANALGLHPANDKKEQAIVGRVLSWGKESINTYLKTY---------------------HDEQIDFVLSCDCIFEPLYGDSWKALAITMQEICELNPECSVFLSVERRKEDGVDRFL 221          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A8J2SF35_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF35_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.480e-35
Identity = 99/253 (39.13%), Postives = 132/253 (52.17%), Query Frame = 1
Query:  121 LCTDRVEVEFDGVT---LDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCD--YMSEHLRQAMVGATVVELGCGIGVPGMVARLLGA-TVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERR----GVDGVPEFLRACKAEGFSLQTVYRAAPSAPAPVELYEFSK 849
            +C  ++ V  +GV    LDL  S    +++ P+FSGA WAGTV+W AA  L D  ++     Q + G T +ELGCG+GVPGM    LGA  V LTEQ  L+ LL RN+  NF+    GE  +R  +  W R A  + L       G                     D ++C DCV+ PLYGDSWKAL + +  L+   T VL S+ERR    G DGV  FL   +A GF+ +T Y AA     PVE++ F +
Sbjct:   35 ICQSQLTVRCEGVAPLNLDLKLS---PDDLEPVFSGAAWAGTVLWRAAAVLVDRAFLGADAVQ-IKGRTCIELGCGLGVPGMACARLGARNVALTEQQSLVDLLTRNVAANFSA---GED-VRAVSFPWSR-AGAEALKHDFCDGGC-------------------FDVIVCCDCVYMPLYGDSWKALLEAIDALAGPATDVLISLERRHVKDGDDGVDPFLEGMRANGFA-RTSYPAAM----PVEVFRFRR 254          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A7S2RY16_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY16_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.490e-35
Identity = 86/203 (42.36%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  205 PIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGAT-VVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRR---EALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLS-DAGTTVLCSVERRGVDGVPEFLRACKAEGFSLQTVY 798
            PIF G CWAGT+VW AA  + +++    R+ + GA+V+ELGCG+G PGMVA LLGA  V+LTEQ  LL LL RN+  NF     GEG +     + L W      D L+ S                    RR    D +L  DCVFEPLYG+SW  L + +  L+ D  TT++  +ERR  DGVP+FL A   + F L+ V+
Sbjct:    2 PIFGGCCWAGTIVWAAAQAVMEHVLFPERERVQGASVIELGCGLGAPGMVAALLGARDVLLTEQSSLLPLLHRNIARNFPA--AGEGAVAAPGAQELAWGNSQVRD-LIDS--------------------RRGETFDLILVCDCVFEPLYGESWVLLCETLRHLAVDESTTLVVGLERRSEDGVPKFL-AELGKDFDLKLVW 180          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A1V9YH22_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH22_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.310e-34
Identity = 94/235 (40.00%), Postives = 121/235 (51.49%), Query Frame = 1
Query:  121 LCTDRVEVEFDGVTLDLAQSWENGEEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPGMVARLLGAT-VVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTT--VLCSVERRGVDGVPEFLRACKAEGFSLQTVYRAAPSA 816
            +C +R+ +  +  +LD++   +  EE+AP+F GA WAGT+VW AA  L +YM   L  + +   V+ELG G+GVPGMVA LLGA  VVLTEQ EL+ LL  N+  NFAG       +    L W REA                        A V    T  D +L  DCV+EPLYG+SW+ALA  M  L  A      L SVERR  DG+  FL           ++ RA P A
Sbjct:   15 VCEERIVIHVEDKSLDISLLLDE-EELAPLFCGAAWAGTLVWEAAELLSNYMLNELDVSSL--RVLELGAGLGVPGMVAGLLGAQHVVLTEQPELVPLLRTNIRRNFAG----ANSVAAAELSWGREATR----------------------AFVATHGT-FDVLLSCDCVYEPLYGESWRALAHTMDELCAANPACRALVSVERRHGDGIDRFLAFLPTATRLTASLLRAVPKA 219          
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Match: A0A7S3JW58_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW58_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.170e-34
Identity = 92/226 (40.71%), Postives = 121/226 (53.54%), Query Frame = 1
Query:  193 EEMAPIFSGACWAGTVVWPAALDLCD--YMSEHLR--QAMVGATVVELGCGIGVPGMVARLLGATVV-LTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKVMGRLSDAGTTVLCSVERR----GVDGVPEFLRACKAEGFSLQTVYRAAPSAPAPVELYEF 843
            + + PIFSG  WAGTV+W AA+ L D  ++S++ +    +  A+V+ELGCG+GVPGMVA +LGA +V LTEQ  L+SLLDRN+  NF         I    LDW  E       A   R+ +  GE                D VL  DCV+ PLYGDSW+AL   +  ++   + VL +VERR    G DGV  FL A  +  F    +     S P PVE+Y F
Sbjct:   86 DAIEPIFSGGAWAGTVLWRAAIRLVDICFLSDNKKGIDELQSASVIELGCGLGVPGMVAAVLGARLVALTEQSNLVSLLDRNIKANFLSDSTNNPRIVARELDWCAEQ------AIALRNELLDGEP--------------FDIVLSCDCVYIPLYGDSWRALVDAIIAVAGPKSLVLVAVERRYVQGGTDGVDLFLNAMTSANFIPSLI-----SEP-PVEIYSF 285          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZX5_9PHAE5.170e-20390.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPU0_ECTSI6.840e-20298.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJX9_9STRA3.420e-4547.20Putative methyltransferase-domain-containing prote... [more]
A0A2R5G0X5_9STRA5.430e-3841.03Protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
F0X125_9STRA2.890e-3737.31Uncharacterized protein AlNc14C546G12115 n=1 Tax=A... [more]
A0A024FZ75_9STRA9.110e-3640.17Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8J2SF35_9STRA2.480e-3539.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2RY16_9STRA4.490e-3542.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9YH22_9STRA2.310e-3440.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3JW58_9STRA4.170e-3440.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:240906..244216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score567.0
Seed ortholog evalue5.6e-159
Seed eggNOG ortholog2880.D7FPU0
Model size1209
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Cds size966
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18405.1prot_Ecto-sp6_S_contig92.18405.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 241101..244168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.7402766-UTR-Ecto-sp6_S_contig92:240905..2411001682350560.7402766-UTR-Ecto-sp6_S_contig92:240905..241100Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 240906..241100 -
1682350560.793956-UTR-Ecto-sp6_S_contig92:244168..2442161682350560.793956-UTR-Ecto-sp6_S_contig92:244168..244216Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 244169..244216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.7535615-CDS-Ecto-sp6_S_contig92:241100..2414421682350560.7535615-CDS-Ecto-sp6_S_contig92:241100..241442Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 241101..241442 -
1682350560.7616835-CDS-Ecto-sp6_S_contig92:242147..2421961682350560.7616835-CDS-Ecto-sp6_S_contig92:242147..242196Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 242148..242196 -
1682350560.7702954-CDS-Ecto-sp6_S_contig92:242639..2429271682350560.7702954-CDS-Ecto-sp6_S_contig92:242639..242927Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 242640..242927 -
1682350560.7784765-CDS-Ecto-sp6_S_contig92:243347..2435351682350560.7784765-CDS-Ecto-sp6_S_contig92:243347..243535Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 243348..243535 -
1682350560.7862659-CDS-Ecto-sp6_S_contig92:244069..2441681682350560.7862659-CDS-Ecto-sp6_S_contig92:244069..244168Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 244070..244168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18405.1

>prot_Ecto-sp6_S_contig92.18405.1 ID=prot_Ecto-sp6_S_contig92.18405.1|Name=mRNA_Ecto-sp6_S_contig92.18405.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=322bp
MANPTQPGIKVINKDFKRDDNDTVLCTDRVEVEFDGVTLDLAQSWENGEE
MAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCGIGVPG
MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWERE
ADTDGLLASLERSGIAPGEAEREPGAGVRRRSTRLDFVLCADCVFEPLYG
DSWKALAKVMGRLSDAGTTVLCSVERRGVDGVPEFLRACKAEGFSLQTVY
RAAPSAPAPVELYEFSKGVFRGEAVAVVESDGGTEGGDGKGKPMEGEGGG
ALEVVDGGAVSPGAGSKSTAR*
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mRNA from alignment at Ecto-sp6_S_contig92:240906..244216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18405.1 ID=mRNA_Ecto-sp6_S_contig92.18405.1|Name=mRNA_Ecto-sp6_S_contig92.18405.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3311bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:240906..244216- (Ectocarpus species6 EcLAC_371)
CAGTACTATTATTGTTGTGTCGTTGTCACTACCGGTCAAGCCCTGCTGAT GGCGAACCCAACACAGCCCGGAATCAAGGTCATCAACAAAGATTTCAAGC GCGATGATAACGATACTGTGCTTTGCACAGATCGAGTCGAAGTTGAGGTG AGGCTGTGGTGGTGTCGTACATAGATGCTGTACAAATGCGAATCCACGGT GCGAGCCCGAGTGCTCTTCCTCTCTGCCTCCCCCCCTCTCTCTTGGAGTC TTTCGTATGGGGTGGTGAAGGAGAGTGTCGAGAGCCACACATGAAGTGGT CGTGATGTATTTCATCCACGTGTGATGTGTGGTGCGACTTTTATTCGTCA TTTTCAAATGAGACACATGATATGGCAGAGTTCTGTCACGCCTCTGTACC AGCAGACTGCTGAGCAGTCGAGTTTTAAGTTTTTCAATCGCGGCTACGGC AGGACCGCATGCGAGGTGACGTCTATTCCTTCGACACTAATAGTGCTGTT CGTCTTTAGTTTTCCGTTGCAATACAACAATGTATTTCCGACGCGTCCGC CTGTTGCGTTTTAGAAGCTAGAAAGGTCTGCCCTCCGTTACCCCGACGTA ACCTCTTCTGTGTTACGTGTGTCCCACCACTTCTGCACGGCGACCGCTTC GTGTTCTTCTGCCTTCCTTCGAAACCCTGAGTTCGATGGGGTAACGCTAG ACTTGGCGCAGTCGTGGGAAAACGGGGAGGAGATGGCGCCCATTTTCAGC GGAGCGTGCTGGGCGGGCACCGTGGTCTGGCCGGCTGCGCTGGACCTGTG CGACTACATGAGCGAGCACCTTAGACAGGCGATGGTGGGGGCCACCGTTG TGGAGCTTGGCTGCGGGATGTGAGCCAAGGTTCAGGCAGAGCATTAGAGT AGCACCTAGGTTTGTTGTAGGACGTCCATCGCTTGCTGCTTGCTGCTGCA AGGGGCGCTCCCCTCTCTGTTGTTGATGGCAATGTTGCGACGTCATCCAT GGAAAGACTTGTCGAGCTTGATTGATCTTACACCCAGCTGATGCCGCACG CCAGCTTACAAATTGTGTTGCGCGTGCCCGTGTTTCAGCGTGTTGTTTCT CTGTTCGGGTACGACTCGCACACGACTTTATCGATCACACGAAATCAGCC CTCCAAGGTGTCGGTCGGCCTCGTTCCAACCCCCCCTTTCCCCCTCTCCG AACCCTTCCACCCCCAAACCACAAAAAAATGAAGACGACACCCCACACTT TCCCTCGGTGCCGACACGCGTTCCATGCGACGAAAAAAGCGGCGTGCCGG GCATGGTTGCCCGCCTCCTCGGGGCTACCGTTGTCCTCACCGAGCAGGAC GAGCTCCTCAGCCTCCTGGACAGAAATCTCGACGGCAACTTCGCGGGGCA CCCGCGGGGCGAGGGCGGCATCCGGAGAGAAGCGCTGGACTGGGAGAGGG AGGCGGACACGGACGGCCTTCTTGCCTCCCTGGAGCGTTCTGGCATTGCA CCGGGAGAAGCAGAGAGAGAACCGGGAGCGGGCGTGCGGAGGAGGTCGAC GCGGCTCGACTTCGTCCTCTGCGCAGAGTGAGATGGCAACTACTCTCAGT GCTGTGTCTGTAGCTCGTGTAGTCGGAGGTGGTGTGGTTCCAGAGGCCTT GTGATTGAGTTTACGACCAGCGTAGGTGATGCCGGTTCGCTAGAGTAGCC ACGTGCTTGTTTGAGAATGTGCATTTACCACGGCAACATGAGCAGCAGAT GCGAATTGATCTGTCCTCTGCGAATAGTATCCGCACTGCTATACATATTG CGTCAATTTGTGAGTTCCTGCAAGTGCCGAACTATTCCTAAGCAGGGCCC CTACTCTGACGCAAGCTGCGCTAAAGCCTGCCGGGCACAGCGAGATACTG CGACAAGTCTTGGACATGTCAATCGTGAAGCAGCATCACTAGACTCTAAC CGAAACGTCTGTCCTCTTTCTCTTCTCATCGCGGCTAACACAAATCTATC TGCTGGGGTTGGTGGCGAAGCTGCGTGTTCGAGCCGCTGTACGGCGACTC CTGGAAGGCGTTGGCCAAGGTGACGTCATCATTCAGTGTTGAGGCTTTAC TTTGTGCAAGCCTTAGACATAGTTTGTTGGCATTGAAAGCGCTTCTTTCT CGCAAAAACCGTTGCTCTTCTCGTGACACTGCAACCTGGTCTGGGTTCGA CGTGCTAGTTTTGTCGACTCCAAAAAGCTTTAAAAGCTTTTCGTTCGCTT TTTGGCGACGAGTGTTTGTCTTTTTATTATTCGTGGCGTGTGAAGCTGCA AACGGCGCTGTCGGGGCCTGGACAAAACAGAGACCCCCAAAAGAACCCCA ACCCCCACCCCAGCCTGGGCCGGCGAAAACCCGGCGTGTCGCTCGGTCCC GGTGTTATGGGGATGCGAGGTCGTAAGGTCGTCAATGGTCTAACGACTAC GGTACGGGCGTTACATGAGTACACCCCCACCCTCGCAAGGCGTGTCATTC CGCTGCTTTTTAATTAGCGCGGTCTTCCGTGTCTCTCTCTCTCTCGGCCC TCTGCCCGTATTTTATGCCTTCTGTTTGCTCTCCGTCGGTTGTCGGCACG CTCGCTCCTCCTTCTTCCCTCGGTTGCTTTTCTGTGATGCAAAATGATTG GACTACATGTTCACCATGATGAAAGTTTAGCAGCCCTCGCTTCTGCAATA CGGTACCGACGGACCCAAACCTAACGTCCACACACGCCCGTCTCTTATCC TTGTGCACATCCAACCCAACTTAGGTGATGGGACGCCTCAGCGACGCAGG CACGACCGTCCTCTGCTCCGTGGAGCGTCGAGGGGTCGACGGCGTGCCCG AGTTCCTCCGAGCGTGCAAGGCAGAGGGGTTCTCGCTGCAGACGGTCTAC CGAGCCGCGCCGAGCGCGCCGGCGCCGGTGGAGCTGTACGAGTTTTCCAA GGGGGTGTTTCGAGGGGAGGCGGTGGCCGTGGTGGAAAGCGACGGTGGTA CGGAGGGTGGCGACGGCAAGGGAAAGCCGATGGAGGGAGAGGGAGGCGGA GCGTTGGAGGTGGTGGATGGTGGAGCCGTAAGTCCAGGGGCGGGGTCGAA GAGCACAGCGAGATGATCGATGGTGGTGGCCGCTGGGGCTCATGTAGCTT GGGGTTAAGGTTTATTTGGGTGGCAGACGCATGTGGAGTGGACGGGCCTC TCGAACTTCAAAAGTTTTTTGAACCCCAAGACCAACCAACGGGCGTGTTT TTATTGTTGAGAAATGGCGCACCCTTGTGTCCAAACGAGAGAAAAGGCCG AAGCCTTCCGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:240906..244216-

>mRNA_Ecto-sp6_S_contig92.18405.1 ID=mRNA_Ecto-sp6_S_contig92.18405.1|Name=mRNA_Ecto-sp6_S_contig92.18405.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=966bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:240906..244216- (Ectocarpus species6 EcLAC_371)
ATGGCGAACCCAACACAGCCCGGAATCAAGGTCATCAACAAAGATTTCAA
GCGCGATGATAACGATACTGTGCTTTGCACAGATCGAGTCGAAGTTGAGT
TCGATGGGGTAACGCTAGACTTGGCGCAGTCGTGGGAAAACGGGGAGGAG
ATGGCGCCCATTTTCAGCGGAGCGTGCTGGGCGGGCACCGTGGTCTGGCC
GGCTGCGCTGGACCTGTGCGACTACATGAGCGAGCACCTTAGACAGGCGA
TGGTGGGGGCCACCGTTGTGGAGCTTGGCTGCGGGATCGGCGTGCCGGGC
ATGGTTGCCCGCCTCCTCGGGGCTACCGTTGTCCTCACCGAGCAGGACGA
GCTCCTCAGCCTCCTGGACAGAAATCTCGACGGCAACTTCGCGGGGCACC
CGCGGGGCGAGGGCGGCATCCGGAGAGAAGCGCTGGACTGGGAGAGGGAG
GCGGACACGGACGGCCTTCTTGCCTCCCTGGAGCGTTCTGGCATTGCACC
GGGAGAAGCAGAGAGAGAACCGGGAGCGGGCGTGCGGAGGAGGTCGACGC
GGCTCGACTTCGTCCTCTGCGCAGACTGCGTGTTCGAGCCGCTGTACGGC
GACTCCTGGAAGGCGTTGGCCAAGGTGATGGGACGCCTCAGCGACGCAGG
CACGACCGTCCTCTGCTCCGTGGAGCGTCGAGGGGTCGACGGCGTGCCCG
AGTTCCTCCGAGCGTGCAAGGCAGAGGGGTTCTCGCTGCAGACGGTCTAC
CGAGCCGCGCCGAGCGCGCCGGCGCCGGTGGAGCTGTACGAGTTTTCCAA
GGGGGTGTTTCGAGGGGAGGCGGTGGCCGTGGTGGAAAGCGACGGTGGTA
CGGAGGGTGGCGACGGCAAGGGAAAGCCGATGGAGGGAGAGGGAGGCGGA
GCGTTGGAGGTGGTGGATGGTGGAGCCGTAAGTCCAGGGGCGGGGTCGAA
GAGCACAGCGAGATGA
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