mRNA_Ecto-sp6_S_contig92.18403.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18403.1
Unique NamemRNA_Ecto-sp6_S_contig92.18403.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18403.1 vs. uniprot
Match: A0A6H5L0B7_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.210e-18
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 2 
Query:    2 MSFQDVRPGQKPSRWQQXXXXXXXXXXXXXXXXXXXXXXXXXXSGRSXXXXXXXXRGWSDASRQGAREGGFGSAGPLRTGGIGAG 256
            MSFQDVRPGQKPSRWQQXXXXXXXXXXXXXXXXXXXXXXXX  SGR  XXXXXXXRGWS+ASRQGAREGGFGSAGPLRTGGIGAG
Sbjct:    1 MSFQDVRPGQKPSRWQQXXXXXXXXXXXXXXXXXXXXXXXXHYSGRKGXXXXXXXRGWSNASRQGAREGGFGSAGPLRTGGIGAG 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0B7_9PHAE8.210e-1894.12t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:234093..234414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size322
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350557.16125-UTR-Ecto-sp6_S_contig92:234092..2340931682350557.16125-UTR-Ecto-sp6_S_contig92:234092..234093Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 234093..234093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350557.1727357-CDS-Ecto-sp6_S_contig92:234093..2344141682350557.1727357-CDS-Ecto-sp6_S_contig92:234093..234414Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 234094..234414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18403.1prot_Ecto-sp6_S_contig92.18403.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 234094..234414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18403.1

>prot_Ecto-sp6_S_contig92.18403.1 ID=prot_Ecto-sp6_S_contig92.18403.1|Name=mRNA_Ecto-sp6_S_contig92.18403.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
MSFQDVRPGQKPSRWQQQQQQQQQNGGGSRTTSSSAGGGGGYYSGRSGSS
SSGGGRGWSDASRQGAREGGFGSAGPLRTGGIGAGGGAAALHHGGLGSSS
SSSSSSS
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mRNA from alignment at Ecto-sp6_S_contig92:234093..234414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18403.1 ID=mRNA_Ecto-sp6_S_contig92.18403.1|Name=mRNA_Ecto-sp6_S_contig92.18403.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=322bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:234093..234414+ (Ectocarpus species6 EcLAC_371)
GATGTCGTTTCAAGACGTGCGCCCGGGACAGAAGCCATCAAGGTGGCAGC
AGCAGCAGCAACAGCAGCAGCAGAACGGAGGGGGCTCTCGAACGACATCA
TCATCGGCCGGCGGCGGCGGTGGCTATTACTCGGGACGGAGCGGAAGCAG
CTCATCGGGAGGAGGGAGGGGGTGGTCGGATGCCTCGCGGCAGGGAGCGC
GAGAGGGAGGCTTCGGCTCGGCGGGGCCGTTGAGAACAGGCGGGATTGGC
GCCGGAGGAGGTGCCGCCGCGTTGCATCACGGAGGATTGGGTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:234093..234414+

>mRNA_Ecto-sp6_S_contig92.18403.1 ID=mRNA_Ecto-sp6_S_contig92.18403.1|Name=mRNA_Ecto-sp6_S_contig92.18403.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:234093..234414+ (Ectocarpus species6 EcLAC_371)
ATGTCGTTTCAAGACGTGCGCCCGGGACAGAAGCCATCAAGGTGGCAGCA
GCAGCAGCAACAGCAGCAGCAGAACGGAGGGGGCTCTCGAACGACATCAT
CATCGGCCGGCGGCGGCGGTGGCTATTACTCGGGACGGAGCGGAAGCAGC
TCATCGGGAGGAGGGAGGGGGTGGTCGGATGCCTCGCGGCAGGGAGCGCG
AGAGGGAGGCTTCGGCTCGGCGGGGCCGTTGAGAACAGGCGGGATTGGCG
CCGGAGGAGGTGCCGCCGCGTTGCATCACGGAGGATTGGGTAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGC
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