mRNA_Ecto-sp6_S_contig92.18392.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18392.1
Unique NamemRNA_Ecto-sp6_S_contig92.18392.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: D7FPV3_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV3_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 9.700e-148
Identity = 233/244 (95.49%), Postives = 233/244 (95.49%), Query Frame = 2
Query:  107 MSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNGPGKVTGDGSPPIXXXXXXXXXXXITLPSNGD 838
            MSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKR          DLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNGPGKVTGDGSPPIXXXXXXXXXXX TLPSNGD
Sbjct:    1 MSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKR----------DLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNGPGKVTGDGSPPIXXXXXXXXXXXXTLPSNGD 234          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A7S2V6C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6C7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.470e-46
Identity = 91/217 (41.94%), Postives = 132/217 (60.83%), Query Frame = 2
Query:   95 QSHQMSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNG 745
            QS   ++I LTYF +PG A   RLAFYVGG+ F+D  V  ++F  +K            LP  QLP+L V+   + +S AILRYAGK+ GLYPSDP+ A K D +ID +      +  +I E +A++K+ MR+EL+  TLP    YLE  L + G  F +G+++TI DL +  ++ WL +G+L GIP + +  F +V+A  EA  +H KV +YY +G
Sbjct:    5 QSTMATTIKLTYFPLPGRAGYTRLAFYVGGVDFEDVIVKGEDFQAMKDS----------LPGKQLPVLEVNGVTYCESMAILRYAGKLSGLYPSDPVEALKCDMLIDMIQGAGNKVAATIREPDAEKKMKMREELASQTLPTLFGYLEEQLNKFGGNFCIGDQLTIADLELLIKVTWLTKGILDGIPPSWIDPFTKVKAIVEATKNHEKVAEYYASG 211          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 169 bits (429), Expect = 1.290e-45
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 2
Query:  122 LTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTT-FFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKV 724
            L+YFD  G AE IRLAF VGGI F+D R  R+++ ++K          P  P+  +P LT+ D V+ QS AILRYAGK+ GLYP+DP+ A  VD ++D + D+   ++P++ E + ++K+ MRK L+E TLP WL Y  + +E  G++ + VG+ +TI DL +YT +  L  G+L GIP TI   F +V A  E V +  KV
Sbjct:    5 LSYFDFKGVAEPIRLAFAVGGIDFEDHRFQREDWPQLK----------PKTPYGSVPTLTIGDRVYAQSNAILRYAGKLAGLYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGMLDGIPKTIAEPFPKVTALLEKVGADEKV 196          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A3C1L1F1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3C1L1F1_9DELT)

HSP 1 Score: 167 bits (423), Expect = 1.150e-44
Identity = 94/204 (46.08%), Postives = 128/204 (62.75%), Query Frame = 2
Query:  110 SSITLTYFDIP-GPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYP-SDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTT-FFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVAS 712
            +++ L Y+D P   AE  RLA ++GGI F+D R +RQ+  ++KR          +LPF QLP+L V DEV  Q+ AI RY G++ GLYP  DP+ AA+VDAVID   DI   IRPSI E +  +KL+MR ++ E +LP WL +L+RWLE  G   F VGE +TI DL ++  + WLR GVL GIP+ I  +   + AH   + S
Sbjct:    3 TTLRLVYWDFPFWRAEVCRLALHLGGIEFEDVRPNRQQSQQMKRDH--------ELPFGQLPVLYVGDEVIAQTGAIARYCGRLAGLYPHDDPLKAARVDAVIDAATDITWLIRPSIREPDPAKKLAMRAQIVETSLPTWLGHLQRWLECHGDQGFVVGESLTIGDLALWRLVGWLRSGVLDGIPENIGEHLPLLMAHQHKIGS 198          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.600e-42
Identity = 84/216 (38.89%), Postives = 124/216 (57.41%), Query Frame = 2
Query:  107 MSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNGPGK 754
            M+ + LTYF+     E +RLA    G+ + D RV  +++  +K          P LP+ Q+P+L VD  V PQS AILRY GKIG LYP+DPI AA  D+  D + DIQ  +R  I+E +A +K  +RK+L E  LP WL  LE+ L+ AG  +F G++++I D+ +  R+ WL  G   G+P T+L     V +  + V + P++  Y +  P K
Sbjct:    1 MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPSEQWPTLK----------PTLPYQQMPVLEVDGAVIPQSLAILRYVGKIGNLYPTDPIQAAFADSATDAVSDIQGYMRGIIFEKDADKKAQLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPKK 206          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A7S2SNE8_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SNE8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 6.350e-42
Identity = 88/204 (43.14%), Postives = 125/204 (61.27%), Query Frame = 2
Query:  113 SITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKV 724
            S+ L+YFD  G AEAIRLAF VG I F+D R++R+ F K K          PDLPF  LP L++ D+ F QS A+LRYAGK+ GLYP+D + A KVD ++D + DIQ A+RPS +E + ++KLSMRKE  E   P ++  +E  +E       VG+++TI DLV+Y        G L GIP      + ++ + ++AV  + +V
Sbjct:    6 SLKLSYFDGKGRAEAIRLAFAVGKIEFEDERLAREAFIKRK----------PDLPFGSLPTLSIGDKQFAQSNALLRYAGKLAGLYPADALEALKVDQILDAVEDIQGALRPSFFEQDKEKKLSMRKEFMENAFPRYVSGIESLVEGKWA---VGDKMTIADLVLYQLKDTFTSGFLDGIPKNAFDEYSKISSVADAVGLNAEV 196          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A2E7BV08_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7BV08_9DELT)

HSP 1 Score: 159 bits (401), Expect = 1.550e-41
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2
Query:  113 SITLTYFDIP-GPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTT-FFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKV 724
            ++ L YFD P   AE  R+A ++G IPF+D R SR+EF ++KR          +LP+ QLP+L VDD    QS AI RY GK+ GLYPSD + AA+ D ++D    I   + PS+   + + K  +R+ L++   P WL  LE  LE  G   FFVGE +T+ DL+I+  + WLR G+L GIP  +L  F  +  H E V  HP V
Sbjct:    4 ALRLIYFDFPFWRAEPSRIALFIGDIPFEDVRPSREEFLRMKRTG--------ELPYGQLPVLDVDDVRIAQSVAIARYCGKVSGLYPSDALQAARCDELLDTATQITQDLGPSMRSKDPEEKARLRQNLAQKIFPRWLGMLEARLEANGDNGFFVGESLTMADLIIWRLLGWLRGGILDGIPTDLLDPFPGLLGHQETVGQHPGV 201          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A3F2RK48_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RK48_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.540e-41
Identity = 86/210 (40.95%), Postives = 132/210 (62.86%), Query Frame = 2
Query:  113 SITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYP-SDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTT-FFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYY 736
            +I LTYF   G AEA RL FY+GG+PF+D+R++ Q+F  +K            LP  Q+PIL VD E+F QS AI+RYAG++ GLYP S P  A K+D ++  M +++  + PS YE++A +K +MR+EL+  TLP + + +E  LE+      F  +++ + D+ IY  +K LR G +  IP T+L  ++ + +  E VA+HPKV ++Y
Sbjct:   29 NIKLTYFAAAGRAEAQRLVFYLGGVPFEDKRINHQQFTAMKES----------LPLGQVPILEVDGEIFTQSHAIMRYAGRVSGLYPNSTPYLALKIDELLHAMAEVEEQMGPSFYESDADKKKAMREELAATTLPRYARLIEARLEKMQQLPAFQSDKVYVHDVAIYAWVKSLRAGYIDSIPTTVLDGYKLLNSTYERVAAHPKVKEWY 228          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: M4B167_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B167_HYAAE)

HSP 1 Score: 164 bits (415), Expect = 2.960e-41
Identity = 87/211 (41.23%), Postives = 134/211 (63.51%), Query Frame = 2
Query:  113 SITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSD-PIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTT-FFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYK 739
            SI LTYF   G AEA RL FY+GGIPF+D+R++R++F  +K             P  Q+P L ++ +V  QS A++RYAG++ GLYPS  P+ A K+D V+  M +I+A + PS YE++  +K +MR+EL+ VTLP +   LE  L++   T FF  + I + ++ IY  +K LR GV+  IP T+L +++ +    + VA+HPKV ++Y+
Sbjct:    6 SIKLTYFSAAGRAEAARLIFYIGGIPFEDKRITREQFMAMKD----------TFPLGQVPTLEINGDVMTQSYAMMRYAGRLSGLYPSTRPVLALKIDEVLSVMGEIEARMVPSFYESDVAKKKAMREELTTVTLPRYAGLLEACLQKMKQTPFFQSDRIYVHEVAIYIWVKSLRSGVIDFIPTTVLSSYQLLNEMHDKVANHPKVQEWYR 206          
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Match: A0A1V9YVC1_9STRA (Glutathione S-transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVC1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.430e-41
Identity = 87/209 (41.63%), Postives = 127/209 (60.77%), Query Frame = 2
Query:  113 SITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALSCRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPS-DPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERA-GTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDY 733
            ++ LTYF+ PG AE  RLA ++  +PF+D R+ R +F            R P LPF Q+P LT++ EVF QS  + RY G + GLYPS DP+ A +VD ++    DI   + PS++E +  +K++MR+EL+EVTLP     LE  L    G  +FVG+ +T+ D+ +Y   K L  G L GIP TI+  + R  A ++AVA+HPKV ++
Sbjct:    5 TLKLTYFNAPGRAELTRLALFINDVPFEDERLDRDQFL----------ARKPTLPFKQVPTLTINGEVFAQSHGMARYVGVLTGLYPSNDPLRAYRVDEILAFSDDIVNKLIPSLFEQDVTKKMAMRRELAEVTLPGLFPLLEARLRATPGGKYFVGDTLTLADIELYCMRKNLTSGHLDGIPTTIIDAYPRWNAIADAVAAHPKVQEW 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV3_ECTSI9.700e-14895.49Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2V6C7_9STRA8.470e-4641.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A061SAH2_9CHLO1.290e-4543.56Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
A0A3C1L1F1_9DELT1.150e-4446.08Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
D8LHF0_ECTSI3.600e-4238.89Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A7S2SNE8_9STRA6.350e-4243.14Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A2E7BV08_9DELT1.550e-4142.23Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A3F2RK48_9STRA2.540e-4140.95Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
M4B167_HYAAE2.960e-4141.23Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1V9YVC1_9STRA5.430e-4141.63Glutathione S-transferase n=1 Tax=Achlya hypogyna ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:158073..162935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score170.6
Seed ortholog evalue8.9e-40
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.6959
Model size1800
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
Exons7
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3Q77R@4776,KOG1695@1,KOG1695@2759
Ec32 ortholog descriptionGlutathione S-transferase
Ec32 orthologEc-18_001805.1
EC2.5.1.18,5.3.99.2
Cds size735
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18392.1prot_Ecto-sp6_S_contig92.18392.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 159032..162606 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350559.274342-UTR-Ecto-sp6_S_contig92:158072..1590311682350559.274342-UTR-Ecto-sp6_S_contig92:158072..159031Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 158073..159031 -
1682350559.356406-UTR-Ecto-sp6_S_contig92:162606..1626221682350559.356406-UTR-Ecto-sp6_S_contig92:162606..162622Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 162607..162622 -
1682350559.3656774-UTR-Ecto-sp6_S_contig92:162845..1629351682350559.3656774-UTR-Ecto-sp6_S_contig92:162845..162935Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 162846..162935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350559.2875655-CDS-Ecto-sp6_S_contig92:159031..1591691682350559.2875655-CDS-Ecto-sp6_S_contig92:159031..159169Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 159032..159169 -
1682350559.2969615-CDS-Ecto-sp6_S_contig92:159414..1594801682350559.2969615-CDS-Ecto-sp6_S_contig92:159414..159480Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 159415..159480 -
1682350559.3134246-CDS-Ecto-sp6_S_contig92:159997..1601561682350559.3134246-CDS-Ecto-sp6_S_contig92:159997..160156Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 159998..160156 -
1682350559.324512-CDS-Ecto-sp6_S_contig92:160447..1605591682350559.324512-CDS-Ecto-sp6_S_contig92:160447..160559Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 160448..160559 -
1682350559.3374581-CDS-Ecto-sp6_S_contig92:161809..1619361682350559.3374581-CDS-Ecto-sp6_S_contig92:161809..161936Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 161810..161936 -
1682350559.3473296-CDS-Ecto-sp6_S_contig92:162473..1626061682350559.3473296-CDS-Ecto-sp6_S_contig92:162473..162606Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 162474..162606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18392.1

>prot_Ecto-sp6_S_contig92.18392.1 ID=prot_Ecto-sp6_S_contig92.18392.1|Name=mRNA_Ecto-sp6_S_contig92.18392.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=245bp
MSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRGPFALS
CRIPDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDA
VIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERA
GTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAV
ASHPKVDDYYKNGPGKVTGDGSPPIPPSPPHSPLSPITLPSNGD*
back to top

mRNA from alignment at Ecto-sp6_S_contig92:158073..162935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18392.1 ID=mRNA_Ecto-sp6_S_contig92.18392.1|Name=mRNA_Ecto-sp6_S_contig92.18392.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4863bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:158073..162935- (Ectocarpus species6 EcLAC_371)
ATGAACCACGAATTTGAACCTCCACACACCAGCCACTCACACAACAACCA AAGCAGAAAGGCGGGCAACACCAGGAGAGGAAGCAAGGGGGTACGTAGGA CCTATGGGTGGGGGGGTTGCGGGAAATACCCCTGCTCAACCACCGTGTAA ACAAATGGCCACGTGTGTGTGGCGTGTGGCCCAAAGCCCATCCACCCGAT CAGTGATCACCCGGTTCACAAAGAAAATGCGGCGTAATTAATTTGACCCA CCGCCATCCCCACACCTCACCACATCACCCACGCTACCTGCCAACTCTCA CAGAGCGTCGCAGGTACCAGAGTCACCAAATGTCTTCCATCACTCTGACG TACTTTGACATCCCGGGGCCTGCGGAGGCGATTAGGCTCGCTTTCTACGT GGGCGGCATACCGTTCAAGGACCGAAGAGTTTCGCGGCAAGAGTTCGCGA AAATCAAACGAGGTGAACACATTTGACAGCAATGCTCAAGCCATATCGAC ATGCGTGCGTGAAGCTTTTTTGGTGGGGTTGTGTAGACTCAGCATGTAGT ACCAATGCGACTTCAGACTCTTCCTTTCTCTGGGCTACCGCGTGGTCTTC CATAGGATAGAGTGCATCGGCTGCTGTCATGGTGTCTCAGTCTCCGTTGG AATTCTACCCGTATGCATGCCTCATATGCATTGTACCAGGTACGCATGTT GACGTATGGGCTACTGTAGCCCCCCTTGGTTGGGCTGACACATAGACCGT GGGATACGTTGTTTATGGTGGACTGCTCGTGGAGAGTTGTTGGCGATGAT TCCGGTGCAACTGAGCACCAGCAGTGTTGGCTCCTCAGTTGGTAACGCGG GGTGGAACGCATTCCGTCCGATTCATCCGTAACTTCAAACTACAGAAGAG CGTACCGGTTCAACGTTCGAACTGTATCACGCTCTGATGCTCCGAAACGT CATCTTCCACATACTTCTACATGTACACACACCCCCCTCTTTGCCCAAGG TCCCTTTGCGTTGTCATGCCGTATACCAGACCTTCCGTTCGCCCAGCTTC CAATCCTAACGGTGGATGATGAGGTCTTTCCCCAGAGCGCTGCGATTCTC CGATACGCTGGAAAAATCGGTGGACTGTGAGTGAAAATATCACGTAAATT TATTGCGCCAAGTTTGTTTCTTTCCAAGATGTGTGTGGTGTGTGGTGTGT GGTGTGTGGTGTGTGGTGTGGGGTGTGCAGGCACGAGCAATCTGTTTTTT GCAACCCTTACCTGCATCTTTGTAGGAAATATATAAATCGCCAAAGAGAG ACTATCTATCCGCTCGATACGATATCCGTTCGGAGGAATGTGCTGCAGTT TTTACAGCTCCACTAGTAGTCCAGATACAACAGCTTAGTGAGGATTGAGG AACACCTGCCGAATATTAGACTGTTGTTTGCGGCCAAGTCTTCACACTCG GAGGAATCAGTGATGCCGGCGGGAACAACATCTCCTGTAGAAATATGACC TAATGCTATTTTTGGAAATTACACATTAAACCACGAAAGGAGACTAGCCA CAGCAGTCGAAGGGTGTGTTGAAATGAATATCCCTATGAATCTCTGCTGG GTCCAACAACAAACTGCCAGGGAGGACCCTCCGCGGTATCATGTGGCGTA CGTATCGCAGTGGCTGGAGACAATTTGCTTGACCATGGTAAAGTCTCACT AATTATTGGTCTTGGAATCCGTGATCACGATGTACATGTTCTTGTCAAAC AATGTTCTTTGCAAACCCATCGACGGAGAGAATATTCACCCAAGGGATTA GGTTTTACACAGCACCAAGCACTGAAGTGTGTGCCCTACTGCTGTAACGC CCGCGTGTTGGGGAGTAAAAGTGGTCTATCCACTACAAGTACCACAACAA CATGGTTCCATTTGGTACGAGGGATGAGGACGTTCATAGTCTCGCAAGAT TCGCAACACAGCTTAGCTTGTACAAGTACCACTGAGCCCTTAAATACCTC TCTCGTGGGGCTGCGTGACGCAACGAACTCTCACATTTGTATTCGGGCGC ACCTACTGCAGAAGCGATCGAAATGTCTACATCGCAGCAGTCAGCAGCCA CTGCCTATGGTAGCAACCCAAAGCACCTTCTCCGCCTTTCATTGTGAACT GTACCCAGACTCAACAAGTACACGTAAGGGGAGGCGTACCCTGTTGTTGG ACAATTGATCAGTGCCCAGCGTCAACAAGTACATGTTGGGGGTGTTGGGC ACTGTTTATATCCCTCGAGTAGATGCATCATTTGCCCACGTAGGATTTCC TCGCGTAGGACTCGTTTCATGTCACTGGTTTTCAACGCTTCTATCGCACG CCGTCGTCCGCTCTTGTTTACCGAAGGTATCCTTCGGACCCGATTGCAGC AGCCAAAGTGGATGCCGTAATCGATTGCATGTTCGACATCCAGGCCGCTA TCCGACCGTCAATTTACGAAACGAACGCACAGCGCAAGGTAGGCTTCAAA AGCCGCCCGCAGGGTCCTGGTTGGGAGATCGCAAAGCACAAACAGATTGC CCAACGGGGTCTGTCGGAGAACTGGCCCCAAACGTTTGAACTTGCACGTT GCGTGAGGAAGTCCAACCCCGACCTTAGAGATCGATTGTACCACCACTAT GATAGCATCGTCCCACTTCCTTGGACCGGAATATGATACATGGAACGTCT CGTCAGGCGTGACGTCGACCCGTCTCGAGCACTGTCCACAACCTCTTCTT CCTCTGTTTTACGTGCGGTACGGAAACAGCTGAGCATGCGAAAGGAGCTC TCGGAGGTGACTCTGCCGCTGTGGTTGCAATACCTCGAGCGATGGCTGGA GCGCGCAGGAACCACGTTCTTCGTCGGAGAAGAGATCACCATCTGCGACC TCGTCATCTATACAAGGATGAAGTGGTTGAGGCGCGGGGTGAGATTGTAC GCGAAAGCCCGTTCAACAAGTAACAGCTTACGGTTCTTGTATTCTGACTG GACTATCCTCTTTTTGTGCGGATGTGTGTAAAGCAATGTGTTCCGAAACA GGAGCGATGTGACACAGGAGGGGTTGTTGTTGTCAGCCTGCCGGAGAGAA AATTTAACGTTATCCATGTGGCGGACTCTGTACGAACGATACATTTCTAC AAATGTCTGCACCGTAAATCTATCTGTGTAAACTAGAGATAGACGAGTAC GCGACGAGCACAGGGTGGACCGCTGACATGCCGTTGTCAGAAAACGCCCG CCAAGGGTTTGCAACCTTTTTCGCAGTGAAGCCAGCCAGGGATTCATGCC GCCGTAAAACAGTTTGCACCTTTGGGTGTGTTTGGTCTCGAAGGAAACTC AAGTTGACGCCCTATGTCTATCGTCGGGAGGCGCAAACTTTACTTCCCAA ATAGGGACATACGGTGAATGGTTGCCCGCACGGTCGTTGCTTCGTCTGAC GTTAGGTGCTCGTCGGGATCCCCGACACAATACTGCGAAACTTCCGGAGG GTTCGCGCTCACTCCGAAGCGGTGAGTCACAAACTGGCTGCAATGTACCT GTGGTCGGAACGGTGACCGGTGTGCTGTTGTCGCGAGATAAACCGCTTAT TTCCTCTCGTCTAGTTATCGCTTCCAGTGTTTAGGCGAGTTAACTTCTTG TGTTTCCGTTAATTGTCGATACTTGCGGCCTTTTCGCGGTGGCTCTCAAA TTGCTCTTGTGTCTACCTTTGTCAAAACAACTACCTCGTATTCCGCACCC TTGTAACCATGGGCAGGTTGCCAGCCACCCGAAGGTCGACGACTACTACA AAAACGGGCCAGGAAAGGTCACTGGAGACGGTTCACCCCCCATCCCGCCC TCTCCTCCGCACTCTCCGCTTTCGCCGATAACGCTGCCTAGCAATGGCGA CTAGACACCCTTGACGCCAATCGTCGCGCATTTTGGAGGCTACAGCAGTA GTGCGTTGCGGGCGACTCGAGTACCTTGTTGACGTCAAGGAACCGAGGGT AGCAGAATGCTGCAGGTGTCACTGAGTTCCCGCAAGGAACGAAAGCGACT GACCACATTGCGTTACTTGTCTGAGTGCGTCGATTTTTGGTGGAGGAGCC GGCTGCGATGGCGTTTTTGGTAGGTTCGATGAGTCCCTCTGCCGCGCCAC GTGCTCAGCTTGTACGGGTTTCTGTCAGTTTTGCTGTTCGTGGAAGTATT TGCAACGCAGCTTGCTCTGTCTCGGTTTGTCTCCCACGAAAAGATGTAGA AGTATGCGCAAGCTCCCTGCACTTGTGGGGCCCGGCCGTGTTGTAGCGTC GCTGCGTGGTGTTGGAAACGTAAACGTTGTAGAAATTAGGTACGTGCTTC GTGTATTTGGTGGGATGACAAGCGTCTCTGCTAGGTGCACGATGCTTGGT ACGTACATGTATGTGTTACAGAATATCACAGACAAGGTCTAAGTCCGGAA GTGTCGGATGGTATGGTGTACTGCTCCGGGACGACCACGGGCAAGATCTA CGAGGCTCCTCTTCGGGACTTTAGTGACTTGCCCCCCGGGGGCAACGCAA GAGGACATGGCCAATGTTATCACGGTTGTATCGCGGCATCTCAGTGTTCG GGGGTGCCGGATTTCCGTACAAACTCCAGTATTCATGTGCTGGAATTATT TTTTCTCACCGCGACTTTTCGCCTTTGCGTGAGTGTGTTGTTTGGGGCTA GCGGCTTCCCTGCTGCAGATCCTGCCGCTGGAACCCGCTGCGTTTGATCG CGTGGCTCGTGTGTAGCGTGTTGCTCATGGTCTCATGGTGTGTGGGAACG TGTGTGCGTTGCGCAGTACTAAAAAAGGGTTCCTGTTTCATGCAAAGAAG TTTTGTATTTCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:158073..162935-

>mRNA_Ecto-sp6_S_contig92.18392.1 ID=mRNA_Ecto-sp6_S_contig92.18392.1|Name=mRNA_Ecto-sp6_S_contig92.18392.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:158073..162935- (Ectocarpus species6 EcLAC_371)
ATGTCTTCCATCACTCTGACGTACTTTGACATCCCGGGGCCTGCGGAGGC
GATTAGGCTCGCTTTCTACGTGGGCGGCATACCGTTCAAGGACCGAAGAG
TTTCGCGGCAAGAGTTCGCGAAAATCAAACGAGGTCCCTTTGCGTTGTCA
TGCCGTATACCAGACCTTCCGTTCGCCCAGCTTCCAATCCTAACGGTGGA
TGATGAGGTCTTTCCCCAGAGCGCTGCGATTCTCCGATACGCTGGAAAAA
TCGGTGGACTGTATCCTTCGGACCCGATTGCAGCAGCCAAAGTGGATGCC
GTAATCGATTGCATGTTCGACATCCAGGCCGCTATCCGACCGTCAATTTA
CGAAACGAACGCACAGCGCAAGCTGAGCATGCGAAAGGAGCTCTCGGAGG
TGACTCTGCCGCTGTGGTTGCAATACCTCGAGCGATGGCTGGAGCGCGCA
GGAACCACGTTCTTCGTCGGAGAAGAGATCACCATCTGCGACCTCGTCAT
CTATACAAGGATGAAGTGGTTGAGGCGCGGGGTGCTCGTCGGGATCCCCG
ACACAATACTGCGAAACTTCCGGAGGGTTCGCGCTCACTCCGAAGCGGTT
GCCAGCCACCCGAAGGTCGACGACTACTACAAAAACGGGCCAGGAAAGGT
CACTGGAGACGGTTCACCCCCCATCCCGCCCTCTCCTCCGCACTCTCCGC
TTTCGCCGATAACGCTGCCTAGCAATGGCGACTAG
back to top