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Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18383.1 vs. uniprot
Match: D8LF96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF96_ECTSI) HSP 1 Score: 582 bits (1499), Expect = 3.910e-195 Identity = 399/425 (93.88%), Postives = 403/425 (94.82%), Query Frame = 1
Query: 25 KVMELVLRMAQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQEEARACEIEGREMLPXXXXXXXXXXVMCRYLEQCEAIRDREHEILPPLTPEDLDSKADRFTGVLDPKGEGGSGGSRRQEDSGGHSGSQDRVTLSAGANAIMSSRMALSIMGPTRSSGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSIAGRAKGLTARIAAAQRNASDERATHSGXXXXXXXXXXXXXXXXXXXXXXRIAAARGGSMPMHFQGRSLMSAEWSSKPGKGAAGRRGHPRYATKGMTPESWTATGKD--TLTPAAGGDLPAPSAGVGEKGTAKKEASGRGDGCLGLGXXXXXXXXXXXXXXXXXXXXXXXXRLGGADGVRENKRGLGRDWEGLYQVRPFDDTPE 1293
+VMELVLR+AQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQEEARACEIEGREMLPXXXXXXXXXXVMCRYLEQCEAIRDREHEILPPLT EDLDSKADRFTGVLDPKGEGGSGG RRQEDSGGHSGSQDRVTLSAGANAIMS+RMALSIMG TRSSGGTG XXXXXX XXXXXXXXXXXXXXXXX SSIAGRAKGLTARIAAAQRNASDERATHSGXXXXXXXXXXXXXXXXXXXXXX RGGSMP HFQGRSLMSAEWSSKPGKGAAGRRGHPRYATKGMTP+SWTATGKD TLTPAAGGDLPAPSAGVGEKGTAKKEA GRGDGCLGLGXXXXXXXXXXXXXXXXXXXXXX LGGADGVRENKRGLGRDWEGLYQVRPFDDTPE
Sbjct: 182 QVMELVLRIAQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQEEARACEIEGREMLPXXXXXXXXXXVMCRYLEQCEAIRDREHEILPPLTLEDLDSKADRFTGVLDPKGEGGSGGIRRQEDSGGHSGSQDRVTLSAGANAIMSARMALSIMGSTRSSGGTGGSKGXXXXXXVRXXXXXXXXXXXXXXXXX-SSIAGRAKGLTARIAAAQRNASDERATHSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGSMPTHFQGRSLMSAEWSSKPGKGAAGRRGHPRYATKGMTPDSWTATGKDEDTLTPAAGGDLPAPSAGVGEKGTAKKEAGGRGDGCLGLGXXXXXXXXXXXXXXXXXXXXXXGAPLGGADGVRENKRGLGRDWEGLYQVRPFDDTPE 605
BLAST of mRNA_Ecto-sp6_S_contig92.18383.1 vs. uniprot
Match: A0A6H5L644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L644_9PHAE) HSP 1 Score: 452 bits (1163), Expect = 8.290e-144 Identity = 314/432 (72.69%), Postives = 318/432 (73.61%), Query Frame = 1
Query: 1 RALSDNFDKVMELVLRMAQLEEDFSRKGITARRLTAAEK----------------------------------------ASLAQLDRVVHKANEYRLFGHGLACYFVDRLSDWPALQ-------------------EEARACEIEGREMLPXXXXXXXXXXVMCRYLEQCEAIRDREHEILPPLTPEDLDSKADRFTGVLDPKGEGGSGGSR---RQEDSGGHSGSQDRVTLSAGANAIMSSRMALSIMGPTRSSGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SSIAGRAKGLTARIAAAQRNASDERATHSGXXXXXXXXXXXXXXXXXXXXXXRIAAARGGSMPMHFQGRSLMSAEWSSKPGKGAAGRRGHPRYATKGMTPESWTATGKD--TLTPAAGGDLPAPSA---GVGEKGTAKK 1083
RALSDNFDKVMELVLR AQLEEDFSRKGITARRLTAAEK ASLAQLDRV HKANEYRLFGHGLACYFVDRLSDWPALQ EEARACEIEGREMLP VMCRYLEQCEAIRDREHEILPPLTPEDLDSKADRFTGVLDPKGEGGSGGSR RQEDSGGHS SQDRVTLSAGANAIMS+RMALSIMG TRSSGGTG XXXXXX XXXXXXXXXXXX SSIAGR KGLTARI AAQR+A D+RATHSG XXXXXXXXXXXXXXXXXXX RGGSMP HFQGRSLMSAEWSSKPGKGAAGRR HPRY TK MTPESWTATGKD T +PAAGGDLP PSA GVGEKGTAKK
Sbjct: 257 RALSDNFDKVMELVLRTAQLEEDFSRKGITARRLTAAEKVSPATYAANVHAPSFLARRLSVHHTPRGAGTSNATALGAQASLAQLDRVAHKANEYRLFGHGLACYFVDRLSDWPALQARSADHVATAHVNQWLCTDEEARACEIEGREMLPAAQRELRLCEVMCRYLEQCEAIRDREHEILPPLTPEDLDSKADRFTGVLDPKGEGGSGGSRCRRRQEDSGGHSSSQDRVTLSAGANAIMSARMALSIMGATRSSGGTGGSKXXXXXXDVRWEEERGXXXXXXXXXXXXXXXGSSIAGRPKGLTARITAAQRHAFDKRATHSGSNSXXXXXXXXXXXXXXXXXXXXXXXXRGGSMPAHFQGRSLMSAEWSSKPGKGAAGRRSHPRYPTKRMTPESWTATGKDRDTPSPAAGGDLPPPSATAAGVGEKGTAKK 688
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2784 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_004130.2 |
| Cds size | 1266 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350558.0415611-UTR-Ecto-sp6_S_contig92:72954..72984 | 1682350558.0415611-UTR-Ecto-sp6_S_contig92:72954..72984 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig92 72955..72984 + |
| 1682350558.0812492-UTR-Ecto-sp6_S_contig92:75670..77158 | 1682350558.0812492-UTR-Ecto-sp6_S_contig92:75670..77158 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig92 75671..77158 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350558.0501359-CDS-Ecto-sp6_S_contig92:72984..73071 | 1682350558.0501359-CDS-Ecto-sp6_S_contig92:72984..73071 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig92 72985..73071 + |
| 1682350558.0580437-CDS-Ecto-sp6_S_contig92:73739..73853 | 1682350558.0580437-CDS-Ecto-sp6_S_contig92:73739..73853 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig92 73740..73853 + |
| 1682350558.0657787-CDS-Ecto-sp6_S_contig92:74160..74246 | 1682350558.0657787-CDS-Ecto-sp6_S_contig92:74160..74246 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig92 74161..74246 + |
| 1682350558.073446-CDS-Ecto-sp6_S_contig92:74691..75670 | 1682350558.073446-CDS-Ecto-sp6_S_contig92:74691..75670 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig92 74692..75670 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig92.18383.1 >prot_Ecto-sp6_S_contig92.18383.1 ID=prot_Ecto-sp6_S_contig92.18383.1|Name=mRNA_Ecto-sp6_S_contig92.18383.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=422bp
MELVLRMAQLEEDFSRKGITARRLTAAEKASLAQLDRVVHKANEYRLFGH GLACYFVDRLSDWPALQEEARACEIEGREMLPAAQRELRLCEVMCRYLEQ CEAIRDREHEILPPLTPEDLDSKADRFTGVLDPKGEGGSGGSRRQEDSGG HSGSQDRVTLSAGANAIMSSRMALSIMGPTRSSGGTGGSKGDEEGGDVRR EEDRGQHHQQSVAAAAGSSIAGRAKGLTARIAAAQRNASDERATHSGSNS NNTTTTASSGTGEAAAAGGRIAAARGGSMPMHFQGRSLMSAEWSSKPGKG AAGRRGHPRYATKGMTPESWTATGKDTLTPAAGGDLPAPSAGVGEKGTAK KEASGRGDGCLGLGSGAAGDLSMRRGQGGSRRGRGGGARLGGADGVRENK RGLGRDWEGLYQVRPFDDTPE* back to topmRNA from alignment at Ecto-sp6_S_contig92:72955..77158+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig92.18383.1 ID=mRNA_Ecto-sp6_S_contig92.18383.1|Name=mRNA_Ecto-sp6_S_contig92.18383.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4204bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:72955..77158+ (Ectocarpus species6 EcLAC_371) CGCGCTCTCAGCGACAACTTCGACAAGGTGATGGAGCTGGTGCTTCGCAT
GGCCCAGCTCGAGGAGGATTTCTCGCGCAAGGGCATCACGGCCCGCCGGC
TGACTGCAGCAGAAAAGGTGAGGGGGAGATCCATCGATCGATCGGTCGAT
CGACACCGCCGCAAGTCTTTCCCGCAAAAAGTATGCCGCAAACATGCACG
CCCCTTGCTTCTTGGCGAGGAGGCTTTCAGTCCTTGATACTCCGAGGGGG
GGGGGGGCGTCCAACGCTACAGCAGTAGGTGCACAGGTGTGTTGTGCGGG
TGGTTGTGGGTGCTCGACGGTGCACCCACCGCATCACACTACAGCGGTTG
TTACAAGGGTTTAGGTGCTTGGTCGCGCCCCAAGCCTTTCCTCGAGGGCG
TTACCGCCGACTCCGAGTCCTGGAAGCCACAGCGCGCCCCCTGCGGGACA
CCCGTACACGCGGTTTCCTCTCACCGTGTGATATGGGCTACAGAGCAGCG
AGCTTGATGCGAAGCAGGGCGCTCGTCGTCGTTGGTGTTGTTCCGGCTGT
GCCGGAAAACCTTGCACGTGTGCATGAACCAAACGCCTGCATTGAACAGT
GTGGACAGAGGGAAGTCGTCCTCGGGAGCCAGATGTAGGGGCAGATTTGA
CCCTACACAGGCCATCTCCACAACAACAGCAGCAGTAGTAACATTGCTGC
ATCTGTGACCGTCGCCCCCCGCGTCGGCGTCGTCATTATGAATGCTGCTG
CTTCTGTCCTTGTTGCCCTGCGTCGCGCCCACCAGGCATCCCTAGCGCAG
CTGGATCGAGTGGTCCACAAGGCCAACGAGTACAGGCTCTTCGGGCACGG
ACTGGCTTGCTACTTCGTGGACAGGCTGTCAGACTGGCCCGCCCTGCAGG
CAAGATCCGCTCAATTATGTTGTTGCCGCTCATCGTGTCAACCgcagTCA
GTCATGAACGAAGGATGATGTGCGTTGAAacttACTTCCGTCCTCAAGCC
TGAGGAGCAAAAGTTGGTCCGAAGTTAGTTAGTTGCCTTCGGGGAAACGG
GTCGAGGGTGGCCCTCGACCTGTTAACCACAGTAGTATTTTTTTCAAGGG
AGAAATGTGCTATGTGCGCCTGCCACCTAAGGCCGTCTGTCACGATCATC
GCCTTTCTTTCTTTTCGCCTGCCAACGAAACACACCCGATGGGTCGAATC
GAGCAGGAAGAGGCGCGAGCGTGCGAGATAGAGGGGCGGGAGATGCTCCC
CGCGGCGCAACGAGAGCTGCGCCTTTGCGAGGTCATGTGCAGGTGAAAAA
GGCAGCAAGCTTCCCAGACGGTAACAACAGCAGAGCAAAGAAAAGCACGT
CATGTCGAACGATGAGGCCGCCCGATGTTTCGGGGGAAGACTGCCGTCGT
TTTCTTTCCGTCCGTCCGTCCCTTACCCACCAGCTAGCTACCGTTGCTTT
GGAGCGTCGGCTCCATGTCCCAAGTTGATGCAGGATTGGCTTGTCAGGGT
TGTGCTATCCTGATTCAAATTTGATTTTGACAAGTGTAAGGTTCTCGGAT
CGATCGCCGGAAAGAGTCTACTCGACGGGCCCCGTCCACCATACACTAGA
AGAAAAGATCTACCGCCAAACGGTCTGTCACACACGCTTCCTACAACCCG
GTCCTTTTTTCGTTATGGTTTGTTTGGTCGATCGATATACTCGCCCCCCC
CCCCCCCCCCTCCCCTCCCCCTCCCCCTCTTCTGTAGGTACCTCGAGCAA
TGCGAGGCCATCCGAGATCGAGAACACGAAATCCTGCCGCCGCTTACCCC
GGAGGACCTCGACTCCAAGGCCGACCGTTTCACCGGCGTCCTCGACCCGA
AGGGAGAAGGAGGAAGCGGTGGCAGCCGCCGCCAGGAGGACTCCGGGGGC
CACAGCGGCAGCCAGGACCGAGTCACCCTCTCGGCGGGCGCCAACGCCAT
CATGTCGTCCCGGATGGCGCTTTCCATAATGGGGCCGACGCGGTCTTCTG
GCGGTACCGGGGGGAGCAAGGGAGACGAGGAAGGAGGCGACGTTCGACGG
GAGGAGGACAGAGGGCAGCACCACCAGCAGAGTGTCGCGGCGGCGGCGGG
TTCGTCGATAGCAGGTAGGGCGAAGGGGCTGACGGCCCGGATAGCAGCGG
CGCAGAGGAACGCCTCCGACGAAAGAGCCACACACAGCGGCAGCAACAGC
AACAATACTACGACTACAGCGTCGTCGGGGACGGGGGAGGCGGCCGCAGC
AGGTGGTCGTATAGCAGCGGCCCGCGGCGGATCGATGCCCATGCACTTCC
AAGGGCGGTCGCTCATGAGCGCCGAGTGGAGCAGCAAGCCCGGGAAAGGC
GCCGCCGGGAGGCGCGGCCACCCCCGGTACGCTACCAAGGGCATGACGCC
GGAGTCTTGGACCGCCACCGGCAAGGACACTCTTACCCCTGCTGCCGGCG
GCGATCTGCCGGCCCCCTCGGCCGGGGTTGGGGAAAAGGGGACGGCAAAG
AAGGAAGCAAGTGGACGCGGGGATGGGTGCTTGGGGTTGGGTTCTGGGGC
AGCGGGAGATTTGTCCATGCGGAGAGGGCAGGGAGGTAGTAGACGTGGGC
GCGGTGGCGGGGCGCGGCTGGGGGGCGCGGACGGGGTCAGAGAGAACAAG
AGGGGGTTGGGTAGGGATTGGGAAGGTCTGTATCAGGTTCGACCGTTCGA
TGATACACCCGAGTAGAGAAAATTATTTGACAAGCGGTCGATCACGGACA
GAACAAAGCAGCTTGTTCGGAAGTGGGGGAAACAATCGCGAACGAAAACC
ACGTAACTATTTGTTGGAACCAGGGAGCGCCCTACGTAGGCATAAATTCT
CCAGGTATGGCACGTGTGTGGCTTACAACCGTGAACAGCACGGAAGCACA
TGAAAAAAGAACCCCGCCTTAGTATCGTTGTCCACTCTCAGACGGTGCCA
ACCACATCAAAAGGTAAGTGTAAAAAAGAGGGAATCCACACTCTGACAAC
TCTCCGTCGACGCCATTGTGAAAAGAGGGAATCGTCCTCGACAGACGTTG
GGGACATTGTACCTTTACGAAGGTGGTCTCCACGTTCGCCTCATTCTCGT
TGTCCACTACTATCAGACCGCCCGTGCCGACCACTTCTCTAGCGGTTTGG
CATTCGATACCCTCGCTTTCACCCCACCCAGCAAAGACAGGGTTTGCGTC
GAAAGGATGTCAGTCGTAACGCGCGTGATGGCCAACAGGCAGAGCAGCAG
CCGAATCGCTGCTCCACAGCACGACAAGACGTCCTTCACCCACCGCCCGC
GTTCACCTTGTCTACAGCGCAAAATGCCACGCAAAGGAACGACTCGTCGG
GAATGTTTGCCTCTGGTAATTCTAGCAAGAACTCGCCAATTGGACAAACC
GCCCCCCTCCAGTAGTGCCTACATCATGCGGCACTCTCAAACACAAAAAT
TTAGAATATGGTGGTGCGCTGTTGACCTACTCCTCTTGCCCCGCACCAGC
GACTCGGAGGTAAAAAACTAGTACAACGCAGGTAGGTCTCACAACATATG
AACTAATTCATCGCTGTGTTATCCCGGACTACCTCTCTTTGGAAAGAGAT
GAGTTGTTTCGTAAGGAGATGTCAACACAAAAACAATTAGCCACCCCCGT
GTGTCTCGCTCCACGGCGGCCTTCCCTCCTTTCCCACCCGTACCGAACAC
ACGGACAGGCTGTTCTTCGCTCGATCAGTATCGTTGGTCCCAGGTCAAGG
CCTCGACGATCCACGCGAGTGCCTGAACGCAGGCTCTCAAGCTCACCCCC
GTTTCAGTGTGCCTCGGGTGTGCGCGATTCCTTGCCGACCCTATCCTAAC
GGCACAAAAGCTTTGGCATGGGTTGCTTCCCGCGGAGTCTCACGAAGGTT
GGGTATAGGTGTGAGCTTGACGGCTTCCTCTCGGCTCAACGGGTGACGGG
GCAAACTATCGGCGGTTAGCCGAGCCCGTTCCCGCCCGACCTCTTGCCCC
ACTTCTTCCTCCTCTCTGAGCTCTCCTCTGACAACCGCCCGAGCTCTGGC
GCCGTCGCCACCCCGCCGCTGTCACACACACACACCCTTGTCGACATGCG
TGCCGCTTCCACGGCAGAGGGTCGCTTGTAATAGGGCCGAGAGACCGGTC
ACAAGAACACCCACAGCCCTCGGTTCGCCTTGCGTTCTCACCCGTCCCCC
GGCG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig92:72955..77158+ >mRNA_Ecto-sp6_S_contig92.18383.1 ID=mRNA_Ecto-sp6_S_contig92.18383.1|Name=mRNA_Ecto-sp6_S_contig92.18383.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:72955..77158+ (Ectocarpus species6 EcLAC_371) ATGGAGCTGGTGCTTCGCATGGCCCAGCTCGAGGAGGATTTCTCGCGCAA GGGCATCACGGCCCGCCGGCTGACTGCAGCAGAAAAGGCATCCCTAGCGC AGCTGGATCGAGTGGTCCACAAGGCCAACGAGTACAGGCTCTTCGGGCAC GGACTGGCTTGCTACTTCGTGGACAGGCTGTCAGACTGGCCCGCCCTGCA GGAAGAGGCGCGAGCGTGCGAGATAGAGGGGCGGGAGATGCTCCCCGCGG CGCAACGAGAGCTGCGCCTTTGCGAGGTCATGTGCAGGTACCTCGAGCAA TGCGAGGCCATCCGAGATCGAGAACACGAAATCCTGCCGCCGCTTACCCC GGAGGACCTCGACTCCAAGGCCGACCGTTTCACCGGCGTCCTCGACCCGA AGGGAGAAGGAGGAAGCGGTGGCAGCCGCCGCCAGGAGGACTCCGGGGGC CACAGCGGCAGCCAGGACCGAGTCACCCTCTCGGCGGGCGCCAACGCCAT CATGTCGTCCCGGATGGCGCTTTCCATAATGGGGCCGACGCGGTCTTCTG GCGGTACCGGGGGGAGCAAGGGAGACGAGGAAGGAGGCGACGTTCGACGG GAGGAGGACAGAGGGCAGCACCACCAGCAGAGTGTCGCGGCGGCGGCGGG TTCGTCGATAGCAGGTAGGGCGAAGGGGCTGACGGCCCGGATAGCAGCGG CGCAGAGGAACGCCTCCGACGAAAGAGCCACACACAGCGGCAGCAACAGC AACAATACTACGACTACAGCGTCGTCGGGGACGGGGGAGGCGGCCGCAGC AGGTGGTCGTATAGCAGCGGCCCGCGGCGGATCGATGCCCATGCACTTCC AAGGGCGGTCGCTCATGAGCGCCGAGTGGAGCAGCAAGCCCGGGAAAGGC GCCGCCGGGAGGCGCGGCCACCCCCGGTACGCTACCAAGGGCATGACGCC GGAGTCTTGGACCGCCACCGGCAAGGACACTCTTACCCCTGCTGCCGGCG GCGATCTGCCGGCCCCCTCGGCCGGGGTTGGGGAAAAGGGGACGGCAAAG AAGGAAGCAAGTGGACGCGGGGATGGGTGCTTGGGGTTGGGTTCTGGGGC AGCGGGAGATTTGTCCATGCGGAGAGGGCAGGGAGGTAGTAGACGTGGGC GCGGTGGCGGGGCGCGGCTGGGGGGCGCGGACGGGGTCAGAGAGAACAAG AGGGGGTTGGGTAGGGATTGGGAAGGTCTGTATCAGGTTCGACCGTTCGA TGATACACCCGAGTAG back to top
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