mRNA_Ecto-sp6_S_contig92.18380.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18380.1
Unique NamemRNA_Ecto-sp6_S_contig92.18380.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 754 bits (1947), Expect = 6.010e-259
Identity = 430/441 (97.51%), Postives = 434/441 (98.41%), Query Frame = 1
Query:    1 MDDRKALIAAVGEAAAAAAPAGEGEEGSATRYESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTQVLEAVAPIVEQGSFLSSQXXXXXXXXXXXXXXXXSTREAKREGTTPGRPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAG 1323
            MDDRKALIAAVGEAAAAA PAGEGEEGSATRYESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHN VWTQVLEAVAPIVEQG FLSSQXXXXXXXXXXXXXXX STREAKREGTTP RPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYA+ATLAHEFLADKERVAPRALV+TAV+LHDIVLSLQGLQGEALR+VIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSL PDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRG EGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAG
Sbjct:    1 MDDRKALIAAVGEAAAAA-PAGEGEEGSATRYESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNWVWTQVLEAVAPIVEQGRFLSSQXXXXXXXXXXXXXXXNSTREAKREGTTPERPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYASATLAHEFLADKERVAPRALVDTAVYLHDIVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGTEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAG 440          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 489 bits (1258), Expect = 2.620e-157
Identity = 246/259 (94.98%), Postives = 253/259 (97.68%), Query Frame = 1
Query:  496 SLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQ 1272
            S  ++VLYAAATLAHEFLADKERVAPRALV+TAV+LHDIVLSLQGLQGEALR+VIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSL PDAKEADVKRMH +KGALLLLDFEDESSDSLRALLLRTFMSPVYLK SEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNIL+VLEGLHSQKK KGVDADLLRLYGPVMWRSLRVANPSVRAQ
Sbjct:   38 SRQVQVLYAAATLAHEFLADKERVAPRALVDTAVYLHDIVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHAVKGALLLLDFEDESSDSLRALLLRTFMSPVYLKSSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILVVLEGLHSQKKAKGVDADLLRLYGPVMWRSLRVANPSVRAQ 296          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: A0A835YRM8_9STRA (Condensin II non structural maintenance of chromosomes subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM8_9STRA)

HSP 1 Score: 310 bits (794), Expect = 1.190e-90
Identity = 177/416 (42.55%), Postives = 236/416 (56.73%), Query Frame = 1
Query:  103 LLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTQVLEAVAPIVEQGSFLSSQXXXXXXXXXXXXXXXXSTREAKREGTTPGRPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQ------------YLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDP 1314
            LL  +KRH +RSD+ +L EV Q + +KEH R W   L  V PI E   +L                      E +  G+  G     ++  A         GA D                       A VS+++E++ A  TLA  FLADK+R AP +L+ T   LH I+L LQG +G AL+  IA+ CE WW  +RPG EHLV  L+P +L+R+L P A++ADV+R+   +GALLLLD+ED  ++  RALLLR F++P +L+   G+R LAS FGLHP+  + IHAV+ AQ+P A++AVLAAYGEVYFR WRGA+G             Y  ++E  C+Q LM                 VL+  H+Q++ KGVDA LLRLY P++WR+LRVANP VRAQA  +L  AFPLQDP
Sbjct:   34 LLALLKRHRARSDEYDLDEVIQALPRKEHERFWAAALALVTPITEGHLYLIDD------------------EEDEXXGSEEGTADEEDAPAAH--------GAVDK---------------------DAVVSISLELMDAITTLAGLFLADKKRAAPPSLLSTMAALHGILLYLQGAEGAALQTAIARACEAWWRAERPGGEHLVACLLPYLLLRALDPAARDADVRRLCDARGALLLLDWEDADAEGTRALLLRAFLAPAFLRGDAGRRFLASVFGLHPAFAARIHAVVSAQLPRARRAVLAAYGEVYFRAWRGADGXXXXXXXXXXXXXYAAEIEGACMQPLMXXXXXXXXXXXXXXARGVLDAFHAQRRQKGVDAALLRLYDPILWRALRVANPVVRAQAAALLARAFPLQDP 402          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: W7TM42_9STRA (Condensin-2 complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA)

HSP 1 Score: 297 bits (761), Expect = 2.350e-86
Identity = 160/409 (39.12%), Postives = 235/409 (57.46%), Query Frame = 1
Query:  103 LLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTQVLEAVAPIVEQGSFLSSQXXXXXXXXXXXXXXXXSTREAKREGTTPGRPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYAA--ATLAHEFLADKERVAPRALVETAVHLHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAG 1323
            LL  V R+++++DD  L +  QTM+ K+ +++W ++   + P +E                             +R+G            G + +   P+ G                          A V+ A   L     A+ +    +  +   P  L++  V LHD++  L G+ GEAL+  I +VCE WW Q R GAE LV   +P ++ RSL  DA+EA VKR++ L+GALLLLD+E+E++   R LLL+ F+ P YLK ++G+RLL   FGLHPSLV +IH  +K+Q+P AKK ++ AYG+VYFR WR AEG YLE +E  C+QDLMHA +H ++P ++  + ++L+  H+ K+++ VDA LLRLY P++WRSLRVA+P+VRAQA  +LVDAFPLQDP  G
Sbjct:   25 LLNLVARNAAKNDDFALEDFLQTMTAKDQSKLWEEIASRLNPTIE-------------------LVAADGQEGEERDGD----------GGQEFVDTCPKVGKDQEEAWRAFRLL------------SAVVATAQATLQVCPPASASTSTSSSADSATPEGLLQVMVALHDVLFQLSGIDGEALQGAIVRVCEQWWKQGRGGAEFLVAQTVPYLVARSLEEDAREALVKRVYALRGALLLLDYEEEATGPFRELLLQCFLKPTYLKSADGRRLLTFLFGLHPSLVVDIHETVKSQLPYAKKKLVQAYGDVYFRAWRAAEGPYLEAIETGCVQDLMHAAVHCASPSLYATLRLLLQSFHANKRLREVDAMLLRLYDPILWRSLRVASPTVRAQATSLLVDAFPLQDPDMG 392          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: L8GEA4_ACACA (HEAT repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEA4_ACACA)

HSP 1 Score: 266 bits (681), Expect = 1.300e-75
Identity = 162/414 (39.13%), Postives = 235/414 (56.76%), Query Frame = 1
Query:   97 ESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTQVLEAVAPIVEQGSFLSSQXXXXXXXXXXXXXXXXSTREAKREGTTPGRPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDIVLSLQGLQGEA----LRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGK 1326
            E L+  VKRH +R D+ +L E+ +T  +K + ++W+ +   V+ IVE  +F   +                +   AKR     GRP   +                    XXXXXXXXXX        ++ + + A+E L A A LA  F+A K+R+AP +L ++   LH I+L +  ++G      L   IA++CE WW QDR   E LV   I  +++++L   AK A +KR++  + ALLLLDF+D+SS  L+ LLLR F+ P++L+ ++GK+ L   FGLHP  +  IH  +K Q+P   K++L AYGEVYF+ W+ A+G YL K+E  CLQDL+   +H     +   +  VL  +H QKK KGVD  LLRLY P++WRSL+VANP VR  A  +L DAFPLQDP + +
Sbjct:   19 EELVALVKRHRARGDNYDLKEIVETFPRKHYEQLWSALHVHVSAIVEGSTFTKPEANDEQQPQQAKKSNAKAKPAAKRGR---GRPKKNDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRAKKGSEDKTAET-ALEYLRAVALLASLFIASKDRIAPDSLFDSVALLHGILLDVLAIKGAGHALLLHNEIAQLCETWWKQDRTQKEALVPLTIFYLVLQTLEEGAKTATIKRLYDFRSALLLLDFQDDSSTQLKGLLLRCFIHPMFLRAADGKKFLVYLFGLHPPYIDAIHDTIKGQLPACPKSLLEAYGEVYFKAWKVAQGPYLLKLEYTCLQDLISCAVHVQNEAVVSGLRKVLRHIHEQKKQKGVDEMLLRLYEPIIWRSLKVANPMVRRNATVLLADAFPLQDPDSAQ 428          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.050e-68
Identity = 117/242 (48.35%), Postives = 158/242 (65.29%), Query Frame = 1
Query:  601 LHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGK 1326
            +H+++  L   +  A +  I K CE WWTQ R G E LVV L+P +L+RSL   A   DVKR++ ++ A  LLDFEDES DSL+ LLLR  + P+Y+  ++G+R LA  F LHP+ V ++H  +K QMP  ++ V AAYGEVYF+ WR +EG+   K+E  C+QDLMH  +HAS P M      VL    ++K+ +GVD  L RLY P++WRSL  ANP+VR  A   LVDAFPLQ+P A +
Sbjct:    3 MHNVLFYLMVREAAACQMSIMKACERWWTQARAGREGLVVQLLPTLLMRSLEEGAAPGDVKRVYAVRSAFELLDFEDESIDSLKELLLRCVIHPLYVSRADGRRFLAFLFSLHPTFVDDLHDTIKNQMPSTRR-VHAAYGEVYFKAWRNSEGELTLKIERGCVQDLMHRGVHASLPAMFAATRQVLAAFINEKRSRGVDEMLDRLYEPILWRSLAAANPTVRRNAATALVDAFPLQNPEAAR 243          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: A0A3M6U8W1_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U8W1_POCDA)

HSP 1 Score: 220 bits (561), Expect = 3.730e-65
Identity = 112/232 (48.28%), Postives = 152/232 (65.52%), Query Frame = 1
Query:  637 GEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHAS---TPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAG 1323
             E+L+  IA++CE+W+  +  G E L+    P +++RSLG     +DVKR+ GL+  LLL+DF+D+SS+SL+ LL +  + P YLK  EG+R L+  FGL+P L  E H  +K Q+P     VL+ YGEVYFR WR A G YL+ +E  C+QDLM A +HA    T  M   +  VLE +H QKK +GVD  LLRLY P++WR+ +VANP VRA A  +L D FPLQ+P AG
Sbjct:    7 SESLQNDIAQLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLLHQCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDEALLRLYQPIIWRAFKVANPMVRANAAALLTDIFPLQNPDAG 237          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: UPI000F554239 (condensin-2 complex subunit G2-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F554239)

HSP 1 Score: 234 bits (598), Expect = 1.620e-64
Identity = 143/413 (34.62%), Postives = 214/413 (51.82%), Query Frame = 1
Query:   97 ESLLVFVKRHSSRSDDLNLGEVFQTMSKKEHNRVWTQVLEAVAPIVEQGSFLSSQXXXXXXXXXXXXXXXXSTREAKREGTTPGRPSTPESAGAQTMPRRPRRGAADSGGXXXXXXXXXXXXXXXXXNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVHLHDIVLSL-QGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHAS---TPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAG 1323
            ++ L F+++H+S++D  N+ E  QT+ KK+H R+W+ + +    ++      S +                   +++ EG +                                                 +V L   V+          + +K    P A +ETA  LH +++SL +G   E+L+  IA++CE+W+  +  G E L+    P +++RSLG     +DVKR+ GL+  LLL+DF+D+SS+SL+ LL +  + P YLK  EG+R L+  FGL+P L  E H  +K Q+P     VL+ YGEVYFR WR A G YL+ +E  C+QDLM A +HA    T  M   +  VLE +H QKK +GVD  LLRLY P++WR+ +VANP VRA A  +L D FPLQ+P AG
Sbjct:   18 QAFLRFIEQHNSKNDSFNIEEALQTLPKKDHERLWSGLRDMTRRLLLTNPVGSREND-----------------DSEEEGPS------------------------------------EWPALLSYLEGVTTVGLCALVV----------MPEKPTHVPSAFLETAAILHGLLMSLPEG--SESLQNDIAQLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLLHQCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDEALLRLYQPIIWRAFKVANPMVRANAAALLTDIFPLQNPDAG 364          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: B3RMC3_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RMC3_TRIAD)

HSP 1 Score: 234 bits (596), Expect = 3.170e-64
Identity = 117/256 (45.70%), Postives = 167/256 (65.23%), Query Frame = 1
Query:  553 DKERVAPRALVETAVHLHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHA--STPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDP 1314
            DK+ + P +L E A  LH I++SL       L+  I+++CE+WW++D    E L+ H++P +L+R L PDA   D+KR+  ++  LLLLD++D S+DS + LLLR +M P++LK  EG+R+L   FGLH  L+ +IHA +K  +P + +++   YGEVYFR WR + G Y EK+E  C+QDLMH  IHA  S P +   +  +L+  H +KK  GVD  LL LY P++WRSL+VAN  VRA A  +L  AFPL DP
Sbjct:  107 DKDGIEP-SLHEIASILHGILMSLPEA-AITLQDSISRICELWWSKDFSAKEELIPHMVPYLLMRCLQPDAVLKDIKRLWQIRNCLLLLDYDDPSADSTKLLLLRCYMQPLFLKTDEGRRILTYTFGLHVPLIEDIHATIKNNIPSSSRSLQEYYGEVYFRAWRSSSGPYREKIENFCIQDLMHHAIHARISRPSIAAALKRILDQFHREKKQSGVDKMLLTLYQPIIWRSLKVANAIVRANAAALLFSAFPLHDP 360          
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Match: R1EH25_EMIHU (Putative condensin n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EH25_EMIHU)

HSP 1 Score: 225 bits (574), Expect = 3.270e-64
Identity = 114/266 (42.86%), Postives = 162/266 (60.90%), Query Frame = 1
Query:  571 PRALVETAVHLHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQ-----------------YLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPS 1317
            P  L   A  LHDI+  L   +   L+  I ++CE WW  +RPG + LV   I  +LV +L   A  ADVKR+  L+ AL +LD+ D S  +L+ LLL   + P+ L+C+EG++LL   FGLHP  ++E+H  +KAQ+P  +K++   YGE+YFR WR A G                  YLE++E  CLQDLM   +HA++  M   +  VL   H+QK+ +GVD+ LLRLY P++WR+L+VANP VR  A  +L++AFPLQDP+
Sbjct:  100 PEKLQAVAEALHDIIFDLHDPRASTLQGAIVELCESWWLAERPGRDELVPQTISYLLVSALHEAATAADVKRLWALRSALGVLDYADPSVAALKRLLLHCMIKPLVLRCAEGRKLLVYLFGLHPPFIAELHRAIKAQIPVCRKSLRDLYGEIYFRAWRAASGASSXXXSGGARGGSSVCAYLERLEEGCLQDLMFHAVHAASANMATALRQVLAYTHAQKRQRGVDSMLLRLYEPILWRALKVANPHVRRNAATLLIEAFPLQDPT 365          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF93_ECTSI6.010e-25997.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG90_9PHAE2.620e-15794.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRM8_9STRA1.190e-9042.55Condensin II non structural maintenance of chromos... [more]
W7TM42_9STRA2.350e-8639.12Condensin-2 complex subunit g2 n=2 Tax=Monodopsida... [more]
L8GEA4_ACACA1.300e-7539.13HEAT repeat domain containing protein n=1 Tax=Acan... [more]
A0A7S1CM40_9STRA3.050e-6848.35Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A3M6U8W1_POCDA3.730e-6548.28Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
UPI000F5542391.620e-6434.62condensin-2 complex subunit G2-like n=1 Tax=Pocill... [more]
B3RMC3_TRIAD3.170e-6445.70Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
R1EH25_EMIHU3.270e-6442.86Putative condensin n=1 Tax=Emiliania huxleyi TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:41129..47926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score760.0
Seed ortholog evalue6.2e-217
Seed eggNOG ortholog2880.D8LF93
Preferred nameNCAPG2
Model size1328
KEGG koko:K11492
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
Exons11
EggNOG free text desc.inner cell mass cell proliferation
EggNOG OGsKOG1949@1,KOG1949@2759
Cds size1326
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18380.1prot_Ecto-sp6_S_contig92.18380.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 41129..47926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350557.5978706-CDS-Ecto-sp6_S_contig92:41128..411821682350557.5978706-CDS-Ecto-sp6_S_contig92:41128..41182Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 41129..41182 -
1682350557.611943-CDS-Ecto-sp6_S_contig92:41644..417341682350557.611943-CDS-Ecto-sp6_S_contig92:41644..41734Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 41645..41734 -
1682350557.6227925-CDS-Ecto-sp6_S_contig92:42270..423601682350557.6227925-CDS-Ecto-sp6_S_contig92:42270..42360Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 42271..42360 -
1682350557.634047-CDS-Ecto-sp6_S_contig92:42859..429281682350557.634047-CDS-Ecto-sp6_S_contig92:42859..42928Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 42860..42928 -
1682350557.6441617-CDS-Ecto-sp6_S_contig92:43706..438631682350557.6441617-CDS-Ecto-sp6_S_contig92:43706..43863Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 43707..43863 -
1682350557.6547146-CDS-Ecto-sp6_S_contig92:44346..444181682350557.6547146-CDS-Ecto-sp6_S_contig92:44346..44418Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 44347..44418 -
1682350557.6651816-CDS-Ecto-sp6_S_contig92:44726..448541682350557.6651816-CDS-Ecto-sp6_S_contig92:44726..44854Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 44727..44854 -
1682350557.6762493-CDS-Ecto-sp6_S_contig92:45218..453741682350557.6762493-CDS-Ecto-sp6_S_contig92:45218..45374Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 45219..45374 -
1682350557.6921124-CDS-Ecto-sp6_S_contig92:45901..461381682350557.6921124-CDS-Ecto-sp6_S_contig92:45901..46138Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 45902..46138 -
1682350557.712794-CDS-Ecto-sp6_S_contig92:46897..470361682350557.712794-CDS-Ecto-sp6_S_contig92:46897..47036Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 46898..47036 -
1682350557.7225585-CDS-Ecto-sp6_S_contig92:47792..479261682350557.7225585-CDS-Ecto-sp6_S_contig92:47792..47926Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 47793..47926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18380.1

>prot_Ecto-sp6_S_contig92.18380.1 ID=prot_Ecto-sp6_S_contig92.18380.1|Name=mRNA_Ecto-sp6_S_contig92.18380.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=442bp
MDDRKALIAAVGEAAAAAAPAGEGEEGSATRYESLLVFVKRHSSRSDDLN
LGEVFQTMSKKEHNRVWTQVLEAVAPIVEQGSFLSSQEEEESDDEEEGEE
EENSTREAKREGTTPGRPSTPESAGAQTMPRRPRRGAADSGGDGGGRGGG
SSGDKNAKKNNQASVSLAMEVLYAAATLAHEFLADKERVAPRALVETAVH
LHDIVLSLQGLQGEALRKVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRS
LGPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCS
EGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGA
EGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDA
DLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGK
back to top

mRNA from alignment at Ecto-sp6_S_contig92:41129..47926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18380.1 ID=mRNA_Ecto-sp6_S_contig92.18380.1|Name=mRNA_Ecto-sp6_S_contig92.18380.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:41129..47926- (Ectocarpus species6 EcLAC_371)
ATGGATGACAGGAAAGCGCTGATTGCCGCAGTCGGTGAGGCGGCGGCAGC AGCAGCGCCTGCTGGAGAAGGCGAGGAGGGCTCAGCAACGCGATATGAGA GTCTCCTGGTCTTTGTCAAGCGCCATTCCTCGAGGTGAGCTTGGTTTAAT GGTGTGCTACTCCTATTACCCTGGTGCTGCAAGGATACTTACTGCTCCGA CGTGCTGTTGAAATATATCGCTGTTGTTTTGCCGTTGCGGGTCTGTCCGT TGTGCTCGGCACACGTCGTCGGCGAACAACTTATTTGTTTGGCTCTGCTG TTTGGGCTTGTCGAGGAGCTCTCTGTGCTGTGCTGTGCTGCAGAACGCAC GCCGGTTGTACGCTCCGCCGGGATTCTTGCTGCTGTAGCAGCTTACGAAA TAGCATGCCTAGATGTTTGCGGATGGTTCATGCGGCGTATAGACCTGTGG CACAATGGTTGTGTCCCTGTTTAGACTAATACGTACATATGCAAACCTTG CAATTATACAAACATGTCGACAGCATGTCCCATGTCCTGTATGGTACACC TTAGGGTGTTAAGGTGCCATTTGACCCGTGCGGGCTCTCACCTCGAGCAA GGGTTTTGTTGGTGTGGTGGTTGTGTTGGTGTCGGGCCATGGCTAAATAT CCTGTCCGTTCGCATTTTTTGGTTGGGAAAAGACGCTTCCCTGCTTCCAA GGGGAAGCACACGTGGTGCATCGACTGCTGTACTTCAAGTTTATCACAAG GCCGCGGCATTGCTTATAAAGTGTTAAAGTCTGGTTGGTCTGCAAACCTT GGTAACCAAGATGGTATCACATGCACCTGGTGTCTTCGTACGATGTCTGT CCTGCACGCTATGCATGTGTACCGAACGCATGCCTTGCAGGAGCGATGAC CTGAACCTCGGGGAGGTGTTCCAGACCATGTCAAAGAAGGAACACAATCG GGTGTGGACCCAGGTCCTGGAGGCCGTGGCGCCGATCGTCGAACAGGGAA GCTTCTTGTCGTCCCAGGAAGAGGAAGAGGTGAGCGTATGCCCTGTGTTG TGACGGTCCCAGTCGTAGCTCCCTGGGTGTTCATACTCCCGGTCTCTGTA ACCCTTCTTCAACGCCCCGCTTTGCAACGAAGACATGTGCTACACGCGTG TACATAAACACGCGCAGTTCTGTTCGAGGCAATATGGCCAGCGAAGCAGT GCAAGGACCTAGTCTCGACTTGGAGAGGCAAGAGGAGCAGCAGCGTCAAC AGCAGAAGTTGCCACCACCGCTGCTCTAACAGTTGTTGTGAACCCAACAT TGTTGCGCGATTGAGCGCGTGTCGTTTAGCAATGTGGTGACGAGCGCTTG ATCATGAGTACATTCAGGAGTTGCCGAGCCTGTCACGCTTTGAGGGTGAG GGCCTGAACTGCAGAAGAATTCTCCAGCGCATCTCCAGTTGTCAGCTATT CAGTGGGAAACGGCACGACTACTGTAGGGCAGGAGTTACAGCAACGCAGA TCGGAGGTCAGCGAAGAGTCGGGGGAAGCTCATCTCATTATTCGATACGA CTCGAGCTCGCTAACAATGAACAATGAAGCCATCGTCTGGCTTTGGGCGT TTGCCTACGACATGCCACCGAGGCCACCAAAGTGTCCAACTAGGCAAACG TTGACCTCCAAACTTCTCCGCGTTCTGTCTGTCTGTCTGTCTCTCTCTCC CTTTCTCTCTCTCTCTCTCTCCCTTTCTCTCCCTCTGTCTCCCTTTCTCT ATCTCTCTCTCCCTTTCTCTGTCTTTCTTTCTCGGTAGAGTGACGACGAG GAAGAAGGGGAGGAGGAGGAGAACAGCACCAGAGAAGCAAAGAGAGAAGG CACTACGCCTGGGCGGCCGTCTACCCCGGAGAGCGCCGGAGCCCAGACGA TGCCGCGGCGGCCACGTCGGGGAGCGGCCGACAGCGGCGGCGACGGTGGC GGGAGGGGCGGTGGAAGCTCCGGCGACAAGAACGCGAAGAAGAACAACCA AGCAAGCGTTTCACTTGCGATGGAGGTCGGTATTTTCCTGGCTGCTGTGT ATCGTATGAATGACTAGGTGCCCCTCGCTGGTGTGTGTTTTACTCCGCTG GGGCTCGCGCCTTTGTCTTGCTGCCGACCGACGCGCGTATTCTGCCACCG TACATGTACCAGCAGTGGCGGCGTAGCTATCCTGCGAGGCCTCCATTCCG TGGGTGCCTACGGTGGTTCTTTGTCGCCATGTTTAACTGCGCGGCAAGGG GGTCTGAAATATGCCCCTCGCATGGCGCGCGTTTTTTGCGGGGAGCGGGA AGAAGAATGCGGGGCACACTCGATATGTAGTTTTTCGTCTACGCATCCAT GTCTCTCGTTCCGAAAGGTCGGTGTGTCTCCCTTGCTTTGGGCATTTCAA CAACAGACACGAGCCTTGTGCAATGCTGCGTTAGGCTTCTTCTTCTACAA GCTCGTCGCTCACATTCTGTGCCTTGCAACGTCTGGCACAACCTTGGACG GGGGTTACGCGGACGGGGGTGGGTGGGGGGGGGCGTTTTCACGACAATAC AGGTGCTTTACGCCGCAGCGACGCTTGCCCATGAGTTCCTGGCCGACAAG GAGCGCGTCGCGCCACGGGCGCTGGTAGAGACGGCGGTGCACTTGCACGA CATCGTACTGTCGCTGCAGGGGCTGCAAGGGGAGGCTCTCCGGAAGGTTA TCGCCAAGGTGAACGTGCCAGCAGTACCGACAACAGCAGAGCTTTGGAAT TATGTTGTTGTATTTAGAAAAATGTTGATACAAGACAGAGAGAGGGTGGG ATCTGAGAGCATGGAACATCATCGCACTTTTGAGCTTGCTCCGTTTGGGG GGCGCGGTCCGCATCGATCGTAGAGGTGAAGGAGACGATCGTGTTTTTCA AGAGCAAGCAAGTACGGGAGGAACTGGCGCTAAAAAAGTATAGACGACGT CGTCCTTTTGACACTTCTGTAACATTCGTCTGTTCTGCTGTGTCTACCTG CCGCCGCCGCCGCCGCCGCCATGTCCTTGTCCCGCCGCCGCAAAAAAAAT CAACCGACCGATGGATCGAAAGGTGTGCGAGATGTGGTGGACGCAAGACC GGCCCGGGGCGGAGCACCTGGTGGTGCACCTGATACCGGTGATGCTCGTC CGATCCCTTGGCCCGGACGCCAAGGAGGCGGACGTGAAGAGGATGCACGG GTAAGAGTTGTCCGCATTTCACCGCCGTTCGTGTATCGTCGTGGGATGTA TGACTACGACGTGGGGGTCCCGGCTACAGAGTTGCCAGCAGTAGTGTGCC GCCAATCGTTGCGTCGTACAATGTGAAGCAATGGCGGTACCCTCTTGCTC GGCCGACTCGCTCGCCCCATCTGCCTCTTGTTTGATGGTTTTCTACAAAG TTGTAGCGGTTTCGTTTTTTGTTCATGTTCTGTTCTTGAATTTGGCGTTT TCGTTCTCTCGTCTACCCATTACGTATATACTCCGTCGTTGCCTCCCCCC TCGCTCAGGTTGAAGGGAGCGCTGCTGCTCCTCGACTTCGAGGACGAGAG CAGCGACAGCCTCAGGGCGCTGCTACTCAGGTTCGTCGGCTGGCGTTGGA ATGACTCTTGTGCGCGTACAGCACACGCAAACGGGTCTTGTTGTGTACCT TCAAGCTTGTTTCGGGGTGCAGGCCGATGCTTGCTATCGTGTGGTGGTCC CGCCCGTGTGGTACTACCGGGGTTGCCAGTCCCCTCCCCCTGTCCTGTCT GACCGCACCGCTGCCTCATGTTATGCTATATATGCCCGTGCCTGTGACTT TTTCTACATATAAGCATGGTTTTTGGGATCCCTCGAGCCAGGTTATGTAC GCGGCGATACACCAGACGCGAGTGAATTTGGCATTGTTGTCGGATGTCCC CCTGCACGTTTCGTTTATTCGGGCCGTTGCCACACGAGCATACCTCCGTA TGATTTTCCCCGAACGAACCTCTGCTTTTGCGCCAGTACAACACGAGCCT ACCCCCCGTACGTTTTCCCCCAAATGAACCTTTCGCCGACAACGATCACC GTCGACGGTGCAGGACGTTCATGTCCCCGGTGTACCTCAAGTGTTCCGAG GGTAAACGCCTCCTCGCATCGTTCTTCGGCCTGCACCCGTCCCTCGTGTC CGAGATTCACGCCGTCATGAAGGCGCAGATGCCCGGGGCCAAGAAGGCCG TACTCGCCGCCTACGGGGAGGTGAGTTGGTTGGCGAGCGTCGTGGGGGTT ATCGTCTCGATACGATACTTGGTCGTTCGTCCGTCTTTTTTTTTGTCTTG TTTATGTCGAACTGTTTCGCGGTGGTGCTTGTGTATCTCTTTGTGTGCGG TCGCCTTCGTTTTTTTTTTCTCTTTCTGTATCGATATGCGTATACTGACT CTTTGTCTTTCTATCTCCATCTCTATTTCGCACACACATCACACACCCCA ACGAGGGCGCGGTGGACTCTGCTTGAAGAAACACACATGATCAGCCGGTT ACAGTCGGTGATAATCATAAAGGTGCACACCTTCTCTTAAAGCAAGACAA ATGGCTCCGTAATTCTAAAATCAAGACAAAATAGGCGACACGGTGGGTGC CCATGCAAATTAGCCTTCGACTGCGCGGCCCTAGCACCAGACATGGGGGT GCCACCGCGCATGTTGCTTGCTGCTCCGTGACGTCGTTTTCGACTCTCAT GGCCTCCAAATATATTGGATTTAGACTAGAAACCGAGTACCCGGGCTTGT TCTCGCTCCCTTGCATCGTTTGGGTCATGAACAAAAGATGAGAGCGTGCT TTCCGGGAATGTAAGCAAGATCAAGATTTCATGTGTTTCCGAGGTTGGTT GTTGAAATCCTTGGTGTCGTTCGCTGTTCTGCCGGCTTGTTGTACAGATC CGACGACCTGTGACCTCTACAACAACATGGAATTATTCGTCATGTTCGTG CTTACTTGTTTGTTTGTTTGTTTGGGCGTGCATTCCATCCATCCGCAGGT GTACTTTCGAGTGTGGAGGGGGGCGGAGGGACAGTACCTGGAGAAGGTGG AGATGCTCTGCCTGCAGGTGGGCGTTGACTTTGGTGTTGTGTGAGTTTTG CTAACAACGTGTCGTAGCATTGTTGCTGTTGTTGAGCTGCTGCCTGTGGT CCATGTCGTTCTGCTACGGCTGCCCTTGTTGTTGTTGTTGTGTGTTACTG GTGGTGCTACTGCGGATGTTTTGCGGCGGCTATCTGTTGCCAAACGCCTT GTGGTTACCCTTCGTTTTCCCGTAGCATCGTCGTGCAAGTGTGTGTGTGT ATTTTGCTCGGGCGGGAAGGAAGGCTATACAGACAACCTCCTCGGGCTTC TTGTTTCGACTTTCGAACCCTTGCATTCCGTTTCGTATCGAGCAAGAACC TGTACGGATGCCTGACCTTCTCTTGTCGTTGCTGCTGGTTGTTCAGTTCA ACATACCGCCTGGTATCTACATCCCACGGTTCTCATGTACCAACTCGAGT ATGGACCACGCTGAGCGCGGTGTTGACATCGGCCGCCCCCCTTTGCTGCA CGTTGTTCGTCTGCAGGACCTGATGCATGCGTGCATTCACGCCTCTACGC CAAAGATGCACCAGAACATCCTCATCGTCCTGGAAGGGCTGCATTCGCAG AAGAAGGTCAGACTTCAGGGCCCGCTGGGGGGGGGGATAGGTGTGGCCCA TTTGAATGGTAGAAATTGCGTCGGTCACAAGCAGGTTTTAGTTTTTGGTG GTGTTTCTTGGACTGAGGAATATCCAAGGTTTGTCGGAATTTACAAGCTT CGACCTTGTGACTCAAGAGCACCAGGACCTGTTGCCCACTTCGTTTGGTG ACTTTGCATTCATTGTAACCGAGGCGTGGCCGGTACTCATGGGGTTGATG GAAATAACCCGTCGTTGATAGAATTGGCACGGCTTGCCATCAGTCCTCCA ATCCTTTTGCTTGCTTCCTGCGCCCCTACTCTCTCCAGCTCGTGATCAGC CTTCAAGGAATATCCAACGCTGGTTGAAACTGTAAAGGAAAGGGTTCTAC CCTCTTTTCCATCACCCCGATTAAGGACTCTTCCCTATGCCGTCACCCCG CATACCCGCTGTCGCCTCTCTTGGGTTTCCATGAAGACACGAATGTGCTG ATGCTGCTGTGTATCGTTGACGTTGATCACCGCCGCCGCCAGGTGAAAGG GGTGGACGCTGATCTCCTCCGGCTGTATGGTCCGGTCATGTGGAGGTCTC TCCGCGTCGCCAACCCCTCCGTTCGCGCACAGGTGAGCTAGGGGCGTTAA CCCTTTGCCACGCTGCGCCTTAACCCTTTCCCGCGCTGCGATTGTAGTAC CGTTGTTGGTGGAGGCGATGGTCAGCAATCGGAGAAACACAAGGAATACA TACCTAACTCGGTATTATAGCAGCAGGCAGTGGTGTCTTGGATGTTGCCG CTGTTTAACCGGTCAGCCTGCCAACATATGCGCTTAGGCCACTCCCATGT GGGTTCTCGGACCCACTCGGAACGCGTCAGATGTAGCGCGTCTTTCCCCG CAGGAGTGTAGAAGGGAACGTAGAATGTATGGTATGTGCGGTCGTCCTAC TGCTGGGTCGGTTGATCTCCGAGTGGTGAGAGGCCGATGGTTTCTATGGC AGCGGGCGGTCATCTCTCGTTTTCACTCGGTTTGAATGTGTACGTTTTGG TTTTGCGTTTTTGTGTTCTCGTTGTTGTTCCGCGTTTTGGTCAGGCCTGC CAGGTGCTCGTGGACGCCTTCCCTCTGCAAGACCCCTCCGCAGGCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:41129..47926-

>mRNA_Ecto-sp6_S_contig92.18380.1 ID=mRNA_Ecto-sp6_S_contig92.18380.1|Name=mRNA_Ecto-sp6_S_contig92.18380.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1326bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:41129..47926- (Ectocarpus species6 EcLAC_371)
ATGGATGACAGGAAAGCGCTGATTGCCGCAGTCGGTGAGGCGGCGGCAGC
AGCAGCGCCTGCTGGAGAAGGCGAGGAGGGCTCAGCAACGCGATATGAGA
GTCTCCTGGTCTTTGTCAAGCGCCATTCCTCGAGGAGCGATGACCTGAAC
CTCGGGGAGGTGTTCCAGACCATGTCAAAGAAGGAACACAATCGGGTGTG
GACCCAGGTCCTGGAGGCCGTGGCGCCGATCGTCGAACAGGGAAGCTTCT
TGTCGTCCCAGGAAGAGGAAGAGAGTGACGACGAGGAAGAAGGGGAGGAG
GAGGAGAACAGCACCAGAGAAGCAAAGAGAGAAGGCACTACGCCTGGGCG
GCCGTCTACCCCGGAGAGCGCCGGAGCCCAGACGATGCCGCGGCGGCCAC
GTCGGGGAGCGGCCGACAGCGGCGGCGACGGTGGCGGGAGGGGCGGTGGA
AGCTCCGGCGACAAGAACGCGAAGAAGAACAACCAAGCAAGCGTTTCACT
TGCGATGGAGGTGCTTTACGCCGCAGCGACGCTTGCCCATGAGTTCCTGG
CCGACAAGGAGCGCGTCGCGCCACGGGCGCTGGTAGAGACGGCGGTGCAC
TTGCACGACATCGTACTGTCGCTGCAGGGGCTGCAAGGGGAGGCTCTCCG
GAAGGTTATCGCCAAGGTGTGCGAGATGTGGTGGACGCAAGACCGGCCCG
GGGCGGAGCACCTGGTGGTGCACCTGATACCGGTGATGCTCGTCCGATCC
CTTGGCCCGGACGCCAAGGAGGCGGACGTGAAGAGGATGCACGGGTTGAA
GGGAGCGCTGCTGCTCCTCGACTTCGAGGACGAGAGCAGCGACAGCCTCA
GGGCGCTGCTACTCAGGACGTTCATGTCCCCGGTGTACCTCAAGTGTTCC
GAGGGTAAACGCCTCCTCGCATCGTTCTTCGGCCTGCACCCGTCCCTCGT
GTCCGAGATTCACGCCGTCATGAAGGCGCAGATGCCCGGGGCCAAGAAGG
CCGTACTCGCCGCCTACGGGGAGGTGTACTTTCGAGTGTGGAGGGGGGCG
GAGGGACAGTACCTGGAGAAGGTGGAGATGCTCTGCCTGCAGGACCTGAT
GCATGCGTGCATTCACGCCTCTACGCCAAAGATGCACCAGAACATCCTCA
TCGTCCTGGAAGGGCTGCATTCGCAGAAGAAGGTGAAAGGGGTGGACGCT
GATCTCCTCCGGCTGTATGGTCCGGTCATGTGGAGGTCTCTCCGCGTCGC
CAACCCCTCCGTTCGCGCACAGGCCTGCCAGGTGCTCGTGGACGCCTTCC
CTCTGCAAGACCCCTCCGCAGGCAAG
back to top