mRNA_Ecto-sp6_S_contig91.18377.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig91.18377.1
Unique NamemRNA_Ecto-sp6_S_contig91.18377.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig91.18377.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.130e-40
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   37 DVERPACYINWCLNEDACIILKEEGVPVNVRLPGEDDVAKRCSDCKRADPTILDTDQLIAKSTQPCHV 240
            DVERPACYINWCLNEDACIILKEEG PVNVRL GEDDVAKRCSDCKRAD TILDTDQLIAKSTQPCHV
Sbjct:  134 DVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRADSTILDTDQLIAKSTQPCHV 201
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BLAST of mRNA_Ecto-sp6_S_contig91.18377.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.510e-34
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   37 DVERPACYINWCLNEDACIILKEEGVPVNVRLPGEDD---VAKRCSDCKRADPTILDTDQLIAKSTQPCHVG 243
            DVERPAC+INWCLN +ACI+LK +GVPVNVRL GEDD   V KRC DCKRADPTILDTDQLIAKSTQP HVG
Sbjct:  133 DVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADPTILDTDQLIAKSTQPFHVG 204
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BLAST of mRNA_Ecto-sp6_S_contig91.18377.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-13
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   37 DVERPACYINWCLNEDACIILKEEGVPVNVRLPGEDDV 150
            DVERPACYI WCLN DA IILKEEGVPVN RL GEDDV
Sbjct:  171 DVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig91.18377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LET1_ECTSI1.130e-4095.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE9.510e-3481.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI1.070e-1386.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig91contigEcto-sp6_S_contig91:719882..720826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350557.0757415-CDS-Ecto-sp6_S_contig91:719881..7200281682350557.0757415-CDS-Ecto-sp6_S_contig91:719881..720028Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig91 719882..720028 +
1682350557.0862-CDS-Ecto-sp6_S_contig91:720727..7208261682350557.0862-CDS-Ecto-sp6_S_contig91:720727..720826Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig91 720728..720826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig91.18377.1prot_Ecto-sp6_S_contig91.18377.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig91 719882..720826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig91.18377.1

>prot_Ecto-sp6_S_contig91.18377.1 ID=prot_Ecto-sp6_S_contig91.18377.1|Name=mRNA_Ecto-sp6_S_contig91.18377.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=82bp
MCSLPSPFCDQTDVERPACYINWCLNEDACIILKEEGVPVNVRLPGEDDV
AKRCSDCKRADPTILDTDQLIAKSTQPCHVG*
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mRNA from alignment at Ecto-sp6_S_contig91:719882..720826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig91.18377.1 ID=mRNA_Ecto-sp6_S_contig91.18377.1|Name=mRNA_Ecto-sp6_S_contig91.18377.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=945bp|location=Sequence derived from alignment at Ecto-sp6_S_contig91:719882..720826+ (Ectocarpus species6 EcLAC_371)
ATGTGTTCATTGCCTTCCCCTTTTTGTGATCAAACAGACGTGGAACGCCC
GGCGTGTTACATAAACTGGTGCCTCAACGAGGACGCCTGCATCATCCTCA
AGGAGGAGGGCGTCCCGGTCAACGTTAGGCTTCCCGGTGAGGACGACGTG
AGTCCTTTTATTTTCTGTTTCACAAAACTATCTACTTATTTATTATGTGT
TTCCAGTCCCTACCCTCTTCTGTCTGCCTGCCCAACACAACACGACACCA
ATCAATATTGATGTTCCTGCACGTTAGTATGCGCACTGCCATGTTAGGCA
TGTGTTCCACTGTCCTTTCCTGCCCAACACAACACCAGATATCCTGCCCG
AACATATCCGCACGCACATGCTCGGTGCAACGTGTGTTGCCGCAAGACAT
TTTTTTATATCCTATATGTCCACATTTTTTTTTTTTGTGTTCGGCACCAC
CATTATTTTCAGCGTGACTATGCGCACATACGTGTTCGTTATGTATGTGT
TCCTGCTGCGCAAACACTACAGCTGACGCAGGACCCGCTTCTTTTTTATG
TTCATTCGTGGTGTATGTGCACGCTTTTTTTTTCGTGTTCCACGCCATTT
TTTCAAGTGTGCCTGCCCGTGAATGAATATGCACACGCACATAAATACAT
GTCCTTCGGTATGGTTCGTGATCTTTCTGCTGCCAACGCAATTATGGTCA
CGCAGGACAGCTGTTTTTTCCATTCCATCATTTGCCAATTTCCTCTGTGT
TCTGGTCTTAACACTATATTTGCTGCGCAACGACATAATGCTGACGCAGG
ACGCATCTTTTTTCCCTTCCACATTTTGCTAGTGGAATTCCTGCAGGTTG
CAAAACGCTGCAGTGACTGCAAACGTGCCGACCCGACCATACTGGACACG
GACCAGTTAATCGCCAAGTCCACCCAGCCGTGCCATGTCGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig91:719882..720826+

>mRNA_Ecto-sp6_S_contig91.18377.1 ID=mRNA_Ecto-sp6_S_contig91.18377.1|Name=mRNA_Ecto-sp6_S_contig91.18377.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig91:719882..720826+ (Ectocarpus species6 EcLAC_371)
ATGTGTTCATTGCCTTCCCCTTTTTGTGATCAAACAGACGTGGAACGCCC
GGCGTGTTACATAAACTGGTGCCTCAACGAGGACGCCTGCATCATCCTCA
AGGAGGAGGGCGTCCCGGTCAACGTTAGGCTTCCCGGTGAGGACGACGTT
GCAAAACGCTGCAGTGACTGCAAACGTGCCGACCCGACCATACTGGACAC
GGACCAGTTAATCGCCAAGTCCACCCAGCCGTGCCATGTCGGCTAA
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