mRNA_Ecto-sp6_S_contig91.18376.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig91.18376.1
Unique Name	mRNA_Ecto-sp6_S_contig91.18376.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5JZW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW5_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.150e-70
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 1

Query:    7 MERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLK--ILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            MERVFSDL AFKAQLNKV+QIFK+ GHVCIFLPKYH ELNAIERYWGYVKHVLRLHCEYSLTHMLK  ILP ALSGVPLEHIRAWSR+VWLY+EAYDDG+V YLK+RELKEW+THR
Sbjct:    1 MERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHGELNAIERYWGYVKHVLRLHCEYSLTHMLKXKILPRALSGVPLEHIRAWSRVVWLYIEAYDDGMVGYLKNRELKEWHTHR 116

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 8.920e-70
Identity = 105/116 (90.52%), Postives = 112/116 (96.55%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CCMERVFSDL AFKAQLNKV+QIFK+ GHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILP ALSGVPLEHIRAWSR+VWLY+EAYDDG+V YLK+RELKEW+THR
Sbjct:  722 CCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRVVWLYIEAYDDGMVGYLKNRELKEWHTHR 837

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5KKI5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI5_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.540e-60
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE +FK  GH+CIFLPKYHPELNAIERYWGY+KH+LRLHCEYSL HML++LPGALSGVP   IRAWSR+ WLY+EAYD+G+ DYL+  +LKEW  HR
Sbjct:   76 CCVVRVLSELKAFREELNMVENLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLECCDLKEWGKHR 191

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5LC28_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC28_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.620e-60
Identity = 83/116 (71.55%), Postives = 101/116 (87.07%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE++FK  GH+CIFLPKYHPELNAIERYWGY+KH+LRLHCEYSL HML++LPGALSGVP   IRAWSR+ WLY+EAYD+G+ DYL+ R+LKEW  HR
Sbjct:  110 CCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHR 225

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5K4S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 7.460e-60
Identity = 82/116 (70.69%), Postives = 104/116 (89.66%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ +VF++L+AFK +LNK+E++FK+ GH+CIFL KYHPELNAIERYWGYVKH+LRL CEYSL HML+ILPGALSGVPL  +R WSR+ WLY+EAYD+G+VDYL+ R+LK+W +HR
Sbjct:  125 CCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHR 240

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5KWI8_9PHAE (Uncharacterized protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI8_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 8.320e-60
Identity = 82/116 (70.69%), Postives = 100/116 (86.21%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE++FK  GH+CIFLPKYHPELNAIERYWGY+KH+LRLHCEYSL HML++LPGALSGVP   IR WSR+ WLY+EAYD+G+ DYL+ R+LKEW  HR
Sbjct:  110 CCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRVWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHR 225

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BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5KXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM8_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.960e-59
Identity = 83/116 (71.55%), Postives = 101/116 (87.07%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE++FK  GH+CIFLPKYHPELNAIERYWGY+KH+LRLHCEYSL HML++LPGALSGVP   IRAWSR+ WLY+EAYD+G+ DYL+ R+LKEW  HR
Sbjct:  194 CCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHR 309

[Close]

BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5JR66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR66_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.720e-59
Identity = 82/116 (70.69%), Postives = 101/116 (87.07%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE++FK  GH+CIFLPKYHPELNAIERYWGY+K++LRLHCEYSL HML++LPGALSGVP   IRAWSR+ WLY+EAYD+G+ DYL+ R+LKEW  HR
Sbjct:  173 CCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKYLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHR 288

[Close]

BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5KZJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ0_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.190e-59
Identity = 83/116 (71.55%), Postives = 101/116 (87.07%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE++FK  GH+CIFLPKYHPELNAIERYWGY+KH+LRLHCEYSL HML++LPGALSGVP   IRAWSR+ WLY+EAYD+G+ DYL+ R+LKEW  HR
Sbjct:  225 CCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHR 340

[Close]

BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Match: A0A6H5JIH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH5_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 5.190e-59
Identity = 83/116 (71.55%), Postives = 101/116 (87.07%), Query Frame = 1

Query:    1 CCMERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVDYLKDRELKEWNTHR 348
            CC+ RV S+L+AF+ +LN VE++FK  GH+CIFLPKYHPELNAIERYWGY+KH+LRLHCEYSL HML++LPGALSGVP   IRAWSR+ WLY+EAYD+G+ DYL+ R+LKEW  HR
Sbjct:  234 CCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHR 349

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig91.18376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JZW5_9PHAE	1.150e-70	87.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJM4_9PHAE	8.920e-70	90.52	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKI5_9PHAE	2.540e-60	70.69	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5LC28_9PHAE	3.620e-60	71.55	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4S4_9PHAE	7.460e-60	70.69	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWI8_9PHAE	8.320e-60	70.69	Uncharacterized protein n=18 Tax=Ectocarpus sp. CC...	[more]
A0A6H5KXM8_9PHAE	1.960e-59	71.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR66_9PHAE	3.720e-59	70.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZJ0_9PHAE	4.190e-59	71.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIH5_9PHAE	5.190e-59	71.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig91	contig	Ecto-sp6_S_contig91:638621..638968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Fungi
Stop	0
Start	1
Seed ortholog score	93.2
Seed ortholog evalue	8.4e-17
Seed eggNOG ortholog	588596.U9TIH2
Model size	348
Hectar predicted targeting category	other localisation
Exons	1
EggNOG OGs	29JY0@1,2RT6R@2759,39VBJ@33154,3P12S@4751
Cds size	342
Best tax level	Fungi
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350557.0350356-UTR-Ecto-sp6_S_contig91:638620..638626	1682350557.0350356-UTR-Ecto-sp6_S_contig91:638620..638626	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig91 638621..638626 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350557.0461266-CDS-Ecto-sp6_S_contig91:638626..638968	1682350557.0461266-CDS-Ecto-sp6_S_contig91:638626..638968	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig91 638627..638968 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig91.18376.1	prot_Ecto-sp6_S_contig91.18376.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig91 638627..638968 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig91:638621..638968+
coding sequence from alignment at Ecto-sp6_S_contig91:638621..638968+

protein sequence of mRNA_Ecto-sp6_S_contig91.18376.1

>prot_Ecto-sp6_S_contig91.18376.1 ID=prot_Ecto-sp6_S_contig91.18376.1|Name=mRNA_Ecto-sp6_S_contig91.18376.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=114bp
MERVFSDLRAFKAQLNKVEQIFKEVGHVCIFLPKYHPELNAIERYWGYVK
HVLRLHCEYSLTHMLKILPGALSGVPLEHIRAWSRLVWLYVEAYDDGVVD
YLKDRELKEWNTHR

mRNA from alignment at Ecto-sp6_S_contig91:638621..638968+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig91.18376.1 ID=mRNA_Ecto-sp6_S_contig91.18376.1|Name=mRNA_Ecto-sp6_S_contig91.18376.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp6_S_contig91:638621..638968+ (Ectocarpus species6 EcLAC_371)
TGCTGTATGGAAAGAGTCTTCTCCGACCTGAGGGCTTTCAAGGCGCAGCT
GAACAAGGTCGAGCAGATCTTCAAGGAGGTCGGGCACGTGTGCATCTTCC
TTCCCAAGTACCACCCTGAGCTCAACGCTATTGAGCGGTACTGGGGGTAC
GTCAAGCACGTTCTTCGTCTTCACTGCGAGTACTCCCTCACCCACATGCT
CAAGATTCTGCCGGGCGCGTTGAGTGGGGTGCCGTTGGAACACATCCGCG
CCTGGAGTAGGCTGGTGTGGCTGTACGTTGAAGCATACGACGACGGGGTG
GTGGACTACCTGAAGGACCGCGAACTCAAGGAGTGGAACACGCACCGA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig91:638621..638968+

>mRNA_Ecto-sp6_S_contig91.18376.1 ID=mRNA_Ecto-sp6_S_contig91.18376.1|Name=mRNA_Ecto-sp6_S_contig91.18376.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp6_S_contig91:638621..638968+ (Ectocarpus species6 EcLAC_371)
ATGGAAAGAGTCTTCTCCGACCTGAGGGCTTTCAAGGCGCAGCTGAACAA
GGTCGAGCAGATCTTCAAGGAGGTCGGGCACGTGTGCATCTTCCTTCCCA
AGTACCACCCTGAGCTCAACGCTATTGAGCGGTACTGGGGGTACGTCAAG
CACGTTCTTCGTCTTCACTGCGAGTACTCCCTCACCCACATGCTCAAGAT
TCTGCCGGGCGCGTTGAGTGGGGTGCCGTTGGAACACATCCGCGCCTGGA
GTAGGCTGGTGTGGCTGTACGTTGAAGCATACGACGACGGGGTGGTGGAC
TACCTGAAGGACCGCGAACTCAAGGAGTGGAACACGCACCGA