mRNA_Ecto-sp6_S_contig90.18331.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.050e-45 Identity = 104/214 (48.60%), Postives = 121/214 (56.54%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSET-------TPPTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEVRVICYNYCVGKNAEF--FGLQYSTECWCSMTF------SEQDEGVCDMVCAGASDGTTCGGFDAIEAFAI 599
ICLGICS MD SYTHFGTQYGEECWCTGSLGTTETS ACTY CAGN+GETCGGFDAL++YEI+SE TPP P PA V PSGD++F+ CVAD Q RVM GP+AE MSAE IC+ C ++ + FG QY E + + C CAG + CGGFDA+ + I
Sbjct: 380 ICLGICSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEAPPTPAPLTPPGPMPAPASP-----------------------VVPSGDYDFVDCVADSQSSRVMPVGPLAEAVMSAE---ICFGICSAQDDSYTHFGTQYGEEDLSGQPRPPPTAPTXETSTACVYPCAGNPE-EICGGFDALSVYEI 566
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.210e-42 Identity = 92/140 (65.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSETTPPTDDP-TPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEVRV 419
ICLGICSGMD SYTHFGTQYG ECWCTGSLG+TETS ACT CAGN+ ETCGGFDAL++YEIVSE PPT P TP XXXXXX V PSGD++F+GCVAD Q RVM GP+ ED MSAEV V
Sbjct: 155 ICLGICSGMDASYTHFGTQYGNECWCTGSLGSTETSTACTMDCAGNTAETCGGFDALTLYEIVSEA-PPTPAPFTPPGXXXXXXSP----------------VVPSGDYDFVGCVADSQSSRVMPVGPLTEDVMSAEVGV 277
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI) HSP 1 Score: 156 bits (395), Expect = 6.310e-41 Identity = 89/137 (64.96%), Postives = 98/137 (71.53%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSETTPPTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEV 413
IC GICS D+S THFGTQYGEECWCTGSLGTTETS+ACT CAGNS ETCGGFDALS+YEIV++T+ P PTPA XXXXXX S D+E IGCVAD+Q RVM GP+AEDTMSAEV
Sbjct: 81 ICFGICSAQDDSNTHFGTQYGEECWCTGSLGTTETSSACTMDCAGNSAETCGGFDALSMYEIVADTSSP---PTPAPTLPVXXXXXXASIV-------------SDDYEVIGCVADNQAARVMPVGPLAEDTMSAEV 201
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: A0A6H5KH26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH26_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.510e-25 Identity = 70/104 (67.31%), Postives = 74/104 (71.15%), Query Frame = 3
Query: 69 ECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSETTPPTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEG 380
+CWCT SLGTTETS ACTY CAGN GETCGGFDALS+Y+IVS TTPPTDDPTPA XXXXXX V PSGDFE IGCVADDQG+ V G
Sbjct: 5 QCWCTASLGTTETSTACTYPCAGNPGETCGGFDALSLYKIVSVTTPPTDDPTPAPLTXXXXXXTAEP------------VIPSGDFELIGCVADDQGNNVRRRG 96
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.190e-24 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDAL 173
ICLGICS MD SYTHFGTQYGEECWCTGSLGTTETS ACTY CAGN+GETCGGFDAL
Sbjct: 380 ICLGICSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDAL 436
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.280e-22 Identity = 72/210 (34.29%), Postives = 88/210 (41.90%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSETTPPTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEVRVICYNYCVGKNAEFFGLQYSTECWC--SMTFSEQDE--------GVCDMVCAGASD-GTTCGGFDAIEAFAI 599
IC IC + + THFGTQYG EC+CT LG + S CTY C GN ETCGGFD ++ Y I D + IGC+AD GDR+M + MSAE ICY C FG Q+ EC+C F D+ C M CAG + CGGFD + A+ I
Sbjct: 335 ICFDICRELHPTSTHFGTQYGNECFCTDVLGESAVSTDCTYDCIGNPDETCGGFDRITAYRIAGSEPSAGDG-----------------------------------YVSIGCLADKNGDRIMDRRMVTSIPMSAE---ICYGICKDGTNTHFGTQWGKECFCLADADFENMDKHGGELSTASHCQMGCAGFTHRDEKCGGFDEMSAYEI 506
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.040e-21 Identity = 67/202 (33.17%), Postives = 98/202 (48.51%), Query Frame = 3
Query: 9 LGICSGMDESYTHFGTQYGEECWCTGS-LGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSETTPPTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPI--AEDTMSAEVRVICYNYCVGKNAEFFGLQYSTECWCSM----TFSEQDEGVCDMVCAGASDGTTCGGFDAIEAF 593
+ C+ Y ++GTQYGEECWC S T S C++ C+G++GETCGGF+A+SVY S+ P + PTP + P+ D ++GC D Q DR+ P+ A D M+ C ++C ++G QY ECWC T E + C+ C+G +D TCGGF+A+ +
Sbjct: 1 MQFCADFCAEYAYYGTQYGEECWCGNSGYDTLGESTDCSFGCSGDAGETCGGFNAMSVYSTGSD---PVETPTPVAV-----------------------IEPT-DPTYLGCYVDSQTDRIF---PVTTASDVMTL---AFCADFCA--EYAYYGTQYGEECWCGNSGYDTLGESTD--CNYDCSGDAD-ETCGGFNAMSVY 164
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 108 bits (270), Expect = 2.210e-21 Identity = 74/206 (35.92%), Postives = 98/206 (47.57%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETS----AACTYSCAGNSGETCGGFDALSVYEIVSETTP-PTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEVRVICYNYCVGKNAEFFGLQYSTECWCSMTFSEQ----DEGVCDMVCAGASDGTTCGGFDAIEAF 593
+C C G T+F TQYG ECWC GS G S A CTY+CAG++ ETCGGFDA +VY E+TP PT PT SG +GC DD+ +R+M + +++ +M+ E +C C+G FF QY ECWC ++ + C CAG +D TCGGFDA +
Sbjct: 247 LCEQTCVGN----TYFATQYGRECWC-GSAGADYASHGESADCTYACAGDADETCGGFDAANVYLYTGESTPSPTPSPT---------------------------ADESGPLS-LGCYEDDRENRIMDDLALSDFSMTTE---LCEQTCLGNT--FFATQYGRECWCGSAGADYTLHGESTDCTYACAGDAD-QTCGGFDAANVY 413
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI) HSP 1 Score: 108 bits (269), Expect = 5.180e-21 Identity = 70/210 (33.33%), Postives = 87/210 (41.43%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSVYEIVSETTPPTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEVRVICYNYCVGKNAEFFGLQYSTECWC--SMTFSEQDE--------GVCDMVCAGASD-GTTCGGFDAIEAFAI 599
IC IC + + THFGTQYG EC+CT L + S CTY C GN ETCGGFD ++ Y I D + IGC+AD GDR+M + MSAE ICY C FG Q+ EC+C F ++ C M CAG + CGGFD + A+ I
Sbjct: 389 ICFDICRELHPTSTHFGTQYGNECFCTDVLRESAVSTGCTYECRGNPDETCGGFDMITAYRIAGSEPSAGDG-----------------------------------YVSIGCLADKNGDRIMDGRMVTSIPMSAE---ICYGICKDGTNTHFGTQWGKECFCMADADFENMEKHGGELSTASHCQMGCAGFTHRDEKCGGFDEMSAYEI 560
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 106 bits (264), Expect = 3.240e-20 Identity = 71/206 (34.47%), Postives = 98/206 (47.57%), Query Frame = 3
Query: 3 ICLGICSGMDESYTHFGTQYGEECWCTGSLGTTET----SAACTYSCAGNSGETCGGFDALSVYEIVSETTP-PTDDPTPAXXXXXXXXXXXXXXXXXXXXXXXXXVTPSGDFEFIGCVADDQGDRVMSEGPIAEDTMSAEVRVICYNYCVGKNAEFFGLQYSTECWCSMTFSEQ----DEGVCDMVCAGASDGTTCGGFDAIEAF 593
+C C G +F TQYG+ECWC GS G SA CTY+CAG++ +TCGGFDA +VY E+TP PT PT +P +GC DD+ DR+M + ++++ M+ E +C C+G +F QY ECWC ++ + C CAG +D TCGGFDA +
Sbjct: 662 LCEQTCLGN----IYFATQYGQECWC-GSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYKGESTPSPTPSPT------------------------ADDASPLS----LGCYEDDREDRIMDDLALSDNAMTTE---LCEQTCLGNT--YFATQYGRECWCGSAGADYILHGESADCTYACAGDAD-QTCGGFDAANVY 828 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig90.18331.1 >prot_Ecto-sp6_S_contig90.18331.1 ID=prot_Ecto-sp6_S_contig90.18331.1|Name=mRNA_Ecto-sp6_S_contig90.18331.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=193bp MDESYTHFGTQYGEECWCTGSLGTTETSAACTYSCAGNSGETCGGFDALSback to top mRNA from alignment at Ecto-sp6_S_contig90:265302..272003- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig90.18331.1 ID=mRNA_Ecto-sp6_S_contig90.18331.1|Name=mRNA_Ecto-sp6_S_contig90.18331.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6702bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:265302..272003- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:265302..272003- >mRNA_Ecto-sp6_S_contig90.18331.1 ID=mRNA_Ecto-sp6_S_contig90.18331.1|Name=mRNA_Ecto-sp6_S_contig90.18331.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:265302..272003- (Ectocarpus species6 EcLAC_371)back to top |