mRNA_Ecto-sp6_S_contig90.18329.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig90.18329.1
Unique NamemRNA_Ecto-sp6_S_contig90.18329.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: D7G5F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F8_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.160e-13
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1
Query:    1 METMTALSELSAEICYNYCVGENANYEFFGLQYSKE 108
            METMTALSELSAEICYNYCVGENA  EFFGLQYS E
Sbjct:    1 METMTALSELSAEICYNYCVGENA--EFFGLQYSTE 34          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: A0A1E1LDB1_9HELO (Related to beta-1,3 exoglucanase n=3 Tax=Rhynchosporium TaxID=38037 RepID=A0A1E1LDB1_9HELO)

HSP 1 Score: 60.1 bits (144), Expect = 2.650e-9
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   16 ALSELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFSEE----DEGVCDMVCEGAANEDTCGG 198
            +L  ++ + C +YC  +  NYEF GL+Y+KECWC+ S S      D+G CD+ C G   +  CGG
Sbjct:   80 SLETMTVQTCLDYC--KKDNYEFAGLEYTKECWCAHSLSSAAQKLDDGACDLACTGNTTQ-VCGG 141          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-7
Identity = 25/74 (33.78%), Postives = 40/74 (54.05%), Query Frame = 1
Query:    4 ETMTALSELSAEICYNYCVGENANYEFFGLQYSKECWC--STSFSEEDEGVCDMVCEGAANEDTCGGFDAIEAF 219
            + +    ++++EIC   C      Y+++G QYS +CWC  +  +     G CDM C G A+E  CGGF A+  +
Sbjct:   90 DLVATADDMTSEICLGNC----GAYQYYGTQYSTQCWCGDNADYDANGAGECDMACSGDASE-ICGGFYAMSVY 158          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: A0A8H7TAF5_9HELO (WSC domain-containing protein n=2 Tax=Cadophora TaxID=210567 RepID=A0A8H7TAF5_9HELO)

HSP 1 Score: 54.7 bits (130), Expect = 2.730e-7
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   16 ALSELSAEICYNYCVGENANYEFFGLQYSKECWCS---TSFSEE-DEGVCDMVCEGAANEDTCGG 198
            ++  ++ E C +YC  +   YEF GL+Y+KECWCS   +S +E+ D+  CD+ C G   E  CGG
Sbjct:   75 SVDTMTVESCLDYCNADG--YEFAGLEYTKECWCSPFLSSIAEKLDDSACDLACIGNTTE-ICGG 136          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 3.840e-7
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:    4 ETMTALSELSAEICYNYCVGENANYEFFGLQYSKECWC--STSFSEEDEGVCDMVCEGAANEDTCGGFDAIEAF 219
            E +    ++++EIC   C      Y+++G QYS +CWC  +  +     G CDM C G A+E  CGGF  +  +
Sbjct:  120 ELVATSDDMTSEICLGNC----GAYQYYGTQYSTQCWCGDNADYDANGAGECDMACSGDASE-ICGGFYTMSVY 188          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: W7LYD0_GIBM7 (WSC domain-containing protein n=1 Tax=Gibberella moniliformis (strain M3125 / FGSC 7600) TaxID=334819 RepID=W7LYD0_GIBM7)

HSP 1 Score: 52.8 bits (125), Expect = 1.370e-6
Identity = 21/71 (29.58%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   25 ELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFSEE----DEGVCDMVCEGAANEDTCGGFDAIEAFAI 225
            +++  IC  +C      Y++ GL++S+ECWC+   S      D+G C+  CEG +++  CGG   +  + +
Sbjct:   72 KMTVPICLEFCASNGTQYQYAGLEWSRECWCALYLSSLSVRLDDGECENSCEGNSSQ-VCGGTLKLSVYEL 141          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: A0A074Y4Y7_AURPU (WSC-domain-containing protein n=10 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A074Y4Y7_AURPU)

HSP 1 Score: 52.4 bits (124), Expect = 2.220e-6
Identity = 25/76 (32.89%), Postives = 41/76 (53.95%), Query Frame = 1
Query:   10 MTALSELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFS----EEDEGVCDMVCEGAANEDTCGGFDAIEAFAI 225
            M ++   + E C  YC    +NY++ GL+Y++ECWCS   S    + +E  C + C+G   E  CGG+  I  + +
Sbjct:   73 MESVDTATVEACLEYCGA--SNYQYAGLEYAQECWCSNYISSLSTQLEESNCSLACKGNDTE-LCGGYLTITLYNL 145          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: A0A316U3A1_9BASI (WSC-domain-containing protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U3A1_9BASI)

HSP 1 Score: 53.1 bits (126), Expect = 2.620e-6
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   13 TALSELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFSEEDEGVCDMVCEGAANEDTCGGFDAIEAF 219
            T+ S ++ E C  +C G    Y++FGL+YS EC+C  + +      C M+C G  N + CGG +A+  +
Sbjct:  536 TSTSSMTVESCAAFCSG----YQYFGLEYSSECYCGQTLTAATGTGCTMLCAGN-NTELCGGSNALSVY 599          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: R7YQ66_CONA1 (Uncharacterized protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YQ66_CONA1)

HSP 1 Score: 53.1 bits (126), Expect = 2.640e-6
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   16 ALSELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFSEED----EGVCDMVCEGAANEDTCGGFDAIEAFAIN 228
            A S ++ E+C  YC    AN+++FG++YS+EC+C    S +     +G C+MVC   + E  CGG + +  +  N
Sbjct: 1288 ANSSMTIELCATYC----ANFDYFGVEYSQECFCGNVLSAKSLPVTDGRCNMVCAADSTE-ICGGPNGLSMYKKN 1357          
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Match: A0A4S9BRW8_AURPU (WSC-domain-containing protein n=5 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9BRW8_AURPU)

HSP 1 Score: 52.4 bits (124), Expect = 3.530e-6
Identity = 25/76 (32.89%), Postives = 41/76 (53.95%), Query Frame = 1
Query:   10 MTALSELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFS----EEDEGVCDMVCEGAANEDTCGGFDAIEAFAI 225
            M ++   + E C  YC    +NY++ GL+Y++ECWCS   S    + +E  C + C+G   E  CGG+  I  + +
Sbjct:  128 MESVDTATVEACLEYCGA--SNYQYAGLEYAQECWCSNYISSLSTQLEESNCSLACKGNDTE-LCGGYLTITLYNL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5F8_ECTSI4.160e-1391.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E1LDB1_9HELO2.650e-941.54Related to beta-1,3 exoglucanase n=3 Tax=Rhynchosp... [more]
A0A6H5K060_9PHAE2.080e-733.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H7TAF5_9HELO2.730e-741.54WSC domain-containing protein n=2 Tax=Cadophora Ta... [more]
D7FH79_ECTSI3.840e-733.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7LYD0_GIBM71.370e-629.58WSC domain-containing protein n=1 Tax=Gibberella m... [more]
A0A074Y4Y7_AURPU2.220e-632.89WSC-domain-containing protein n=10 Tax=Aureobasidi... [more]
A0A316U3A1_9BASI2.620e-634.78WSC-domain-containing protein n=1 Tax=Pseudomicros... [more]
R7YQ66_CONA12.640e-634.67Uncharacterized protein n=1 Tax=Coniosporium apoll... [more]
A0A4S9BRW8_AURPU3.530e-632.89WSC-domain-containing protein n=5 Tax=Aureobasidiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig90contigEcto-sp6_S_contig90:238091..239192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.0
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7FLJ3
Model size231
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28IRF@1,2QR2R@2759
Cds size231
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350551.640834-CDS-Ecto-sp6_S_contig90:238090..2381291682350551.640834-CDS-Ecto-sp6_S_contig90:238090..238129Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 238091..238129 +
1682350551.6516948-CDS-Ecto-sp6_S_contig90:238538..2386071682350551.6516948-CDS-Ecto-sp6_S_contig90:238538..238607Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 238539..238607 +
1682350551.6621273-CDS-Ecto-sp6_S_contig90:239069..2391921682350551.6621273-CDS-Ecto-sp6_S_contig90:239069..239192Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 239070..239192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig90.18329.1prot_Ecto-sp6_S_contig90.18329.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig90 238091..239192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig90.18329.1

>prot_Ecto-sp6_S_contig90.18329.1 ID=prot_Ecto-sp6_S_contig90.18329.1|Name=mRNA_Ecto-sp6_S_contig90.18329.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=77bp
METMTALSELSAEICYNYCVGENANYEFFGLQYSKECWCSTSFSEEDEGV
CDMVCEGAANEDTCGGFDAIEAFAIN*
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mRNA from alignment at Ecto-sp6_S_contig90:238091..239192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig90.18329.1 ID=mRNA_Ecto-sp6_S_contig90.18329.1|Name=mRNA_Ecto-sp6_S_contig90.18329.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1102bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:238091..239192+ (Ectocarpus species6 EcLAC_371)
ATGGAGACTATGACCGCTTTGTCGGAGTTGTCTGCCGAGGTGTGTGCAAA GGTGTTATTTTTTTTCAATCTCTGATCTTGACTAAGGGTTGGATGAGTAG ACTAATATATTTGTACAAAGGGTGTCGCGTCAAAACATGTTGTTCTTGTG AGTACTTCGAATGGTTGTGATGTTGGATCTCACGGTAAGGGCGTTTGGTC TTACCATATCATCAATCGTGTCCCCGTCCCAGTGTTACAGCTTGTTCAGT GCTTATTGCTTCAAGTCCTATGCGTTCGTTGGGATCATGTGCTTCGAACC AGCCAAAACCATGTTCTTGCTATGCCGCATGTGAAAATCACAAAAAAACG ATGTTGGAATCACGTGCTTACCCACCAGCCACGACCGATGTTCTTGCTTG CCGCATGTGATTCGTGTGCCACGCCGCTTACCCTCCACTACATTGCAGAT ATGCTACAACTACTGCGTCGGAGAGAACGCTAACTACGAGTTCTTCGGGT TGCAGTACTCGAAAGAGGTAAATATGCTGTTGATGTGATCGTTGCAGTTG CCGCTGTTGTTGACGTTTGTTGCACGCGGAATATTGAGAAACCATATTTC GTAGCGACAGACTTCGTCAATTGTCCATGGATCTCTTTTGGAGAACTTGA AAGATTGTTTTAGACATGCGTCCATATCATGTATCACATTTTCGTCCCAT ACGACCCCCCACCCCCCCCAGGCCACCGGAAGTGGGTTGAAAAGGCGGGA GGTGATGTCGATAGGATATACAGGCTAGGGAAGACATTCTTTGAGCCACC TTCGGCAAAGTAGGAAGGAACGATTGGCCATCGGCGATCGGTCCTGTGGG AACAATGCTCCGTCCTCTCGAAGACGCGTGGTCAATGGTCTAACCGCGAA GGCGTGCAAGACCCCCTCTCCCCAAGCCACCATGCCACGTCATTAACGCG CCCCTTCTGCTCTGAAAACATGATTGCAGTGCTGGTGTTCCACGTCCTTC TCGGAAGAAGACGAGGGTGTGTGCGACATGGTCTGCGAGGGTGCTGCTAA TGAAGACACCTGCGGCGGGTTCGACGCTATCGAAGCGTTCGCCATCAACT AG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:238091..239192+

>mRNA_Ecto-sp6_S_contig90.18329.1 ID=mRNA_Ecto-sp6_S_contig90.18329.1|Name=mRNA_Ecto-sp6_S_contig90.18329.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:238091..239192+ (Ectocarpus species6 EcLAC_371)
ATGGAGACTATGACCGCTTTGTCGGAGTTGTCTGCCGAGATATGCTACAA
CTACTGCGTCGGAGAGAACGCTAACTACGAGTTCTTCGGGTTGCAGTACT
CGAAAGAGTGCTGGTGTTCCACGTCCTTCTCGGAAGAAGACGAGGGTGTG
TGCGACATGGTCTGCGAGGGTGCTGCTAATGAAGACACCTGCGGCGGGTT
CGACGCTATCGAAGCGTTCGCCATCAACTAG
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