mRNA_Ecto-sp6_S_contig90.18328.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig90.18328.1
Unique NamemRNA_Ecto-sp6_S_contig90.18328.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI)

HSP 1 Score: 519 bits (1337), Expect = 8.320e-182
Identity = 272/278 (97.84%), Postives = 273/278 (98.20%), Query Frame = 2 
Query:   86 MRYSAVSFAASCAAMLASSGAFLAPSLNVGVLPRSASSRSTNQQQXHSSGRAVARRTTSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARWEGESI 919
            MR SAVSFAASCAAMLASSGAFLAPSLN GVLPRSASSRSTNQQQ HS GRAVARR TSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTE+SLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARWEGESI
Sbjct:    1 MRSSAVSFAASCAAMLASSGAFLAPSLNFGVLPRSASSRSTNQQQQHS-GRAVARRATSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARWEGESI 277
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BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.380e-73
Identity = 127/229 (55.46%), Postives = 163/229 (71.18%), Query Frame = 2 
Query:  230 SGRAVARRTTSPS---MSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARWE 907
            S  A A R++ P+   M+ LV TL+D VI  PLQPV N+ILVK+  + S T GGIVLPD++ D P EG VVA GPGR+HP T  LIPMCV+ G  V++S++SG+KVKY G DH  I DDDL+LVY G + T  +LKM+RDQVLV   + E  TD GIVI+A TA KE  S+G+VVA+G GRT S G++ PC  + G+ VKF EYA +EI ++   YAVVRMVDC+++W 
Sbjct:   33 SSSAAASRSSRPTCLTMAELVHTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTDTGIVISAQTAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLESESYAVVRMVDCLSKWS 261
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BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.280e-54
Identity = 96/207 (46.38%), Postives = 134/207 (64.73%), Query Frame = 2 
Query:  287 TLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGP-ELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 904
            TL+D  I  PL+PV NYILVK+   +  T GG+ LPD+A++ P  G+VVA G G+ HP TG ++P  V+EGD VL+ ++ G  VKYCGEDH  I DDD++L + G   +T   +K V D VLV   K E ET +GI +AA  +E+ + + G VV  G GR  + G  VP P + G++VKF +YA  +I++ G  Y VVR+ DC+A+W
Sbjct:   32 TLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGEDYIVVRVPDCLAKW 238
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 6.940e-46
Identity = 84/200 (42.00%), Postives = 130/200 (65.00%), Query Frame = 2 
Query:  305 IDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 904
            I   LQPV N++LVK+  A+++TAGGI++P+ A+  P +GL VA GPGR HP TG L+P+ V  G+ V++  + G K+KY  EDH+ + +D+++L Y G  + +++++ V D+VLV   K E +T +GIV++   A K +  +G ++  G GR  S GE +P P K  D +KF EY   E+ I+G+ Y VVR  D +A+W
Sbjct:   38 ITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQTASGIVLSPE-ASKSRVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIEGTEYMVVRANDILAKW 236
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A7S2XTD7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTD7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.010e-41
Identity = 87/213 (40.85%), Postives = 128/213 (60.09%), Query Frame = 2 
Query:  257 TSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCI 895
            T+  ++S   TL+ + I  P+ P+GN++LV+    +S T GGI+LPD+AQ+ P EG V+A GPG  HP TG LI   V +G  VL+ ++ G  + Y  ED   I DDD++L Y G  +T  ++   RD VLV   K + E  +G+VIA+S  + +   +G V+ +GEGR  S G   P P   GD VKF +YA   +KI+   Y++VRM+D +
Sbjct:   47 TAEPLASGPTTLDGETIRGPIAPLGNFVLVRTKDMLSSTEGGILLPDQAQERPTEGEVMAAGPGNIHPDTGILIDNPVIKGMNVLYGKYDGVGMVYNDEDVQMIRDDDVLLYYTGIRMTLENVTPCRDYVLVEIPKTKLEMSSGVVIASSVTKDDLPCEGAVILVGEGRMCSKGVFTPAPCAVGDRVKFRDYAGNPVKIQNKEYSLVRMIDLL 259
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A7S0J0F3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0F3_9EUKA)

HSP 1 Score: 155 bits (391), Expect = 2.500e-40
Identity = 80/197 (40.61%), Postives = 121/197 (61.42%), Query Frame = 2 
Query:  314 PLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 904
            PL  + N  L+K+  A  RTAGG+ +  E    P EG+VVA GPGRTHP TG L+  CV EGD VL + ++G KV+YCGE HMFI  D+++ V+ G      + K +RD+ LV   +  +ET +GI +A    ++E+ + G+VV IG+GR  S G++ P P   GD+V + +++  +  ++G  Y +V   DC+ +W
Sbjct:   46 PLCALNNQALIKLSKADDRTAGGLFVASEESSKPREGVVVAAGPGRTHPETGKLMANCVQEGDYVLLADFTGEKVEYCGESHMFINADEILGVFDGGVPKAEAFKPMRDRALVEVAEIATETASGIALAVG--DEEQPTLGQVVKIGDGRLTSMGDLQPLPISIGDHVLYGKFSGTDTTLEGKKYKIVFASDCLGKW 240
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BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A7S2E919_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E919_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.700e-39
Identity = 81/198 (40.91%), Postives = 126/198 (63.64%), Query Frame = 2 
Query:  242 VARRTTSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYA 835
            V + ++S +  + V+TLE + I   + P+GN++LV+   ++S T GGI+LPD++++ P EG VVA GPG+ HP TGT I   V+ G  VL+ +++G  + Y  ED   I DDD++L Y G  +T +++  VRD VLV  E+ +  T +GIV+A++  +  +  +G VV +GEGR  S+GE    P K G+ VKF +YA
Sbjct:   52 VTKSSSSFTKLNAVVTLEGEKIRGEITPLGNFVLVRQKDSLSATGGGILLPDQSKERPTEGEVVAAGPGKLHPHTGTRITNPVTAGVNVLYGKFAGTPLNYNDEDMQMIRDDDIMLYYDGVSMTRDNVVPVRDYVLVELEEQKLTTSSGIVVASAVTKDLEPCEGIVVKVGEGRMTSSGEFSEAPVKVGERVKFKDYA 249
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BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A8J6CGT7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CGT7_DIALT)

HSP 1 Score: 146 bits (368), Expect = 6.810e-37
Identity = 75/207 (36.23%), Postives = 122/207 (58.94%), Query Frame = 2 
Query:  287 TLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAE-KEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 904
            TL++ V+D PLQP+ + +LVK+  A  +T GG+ L  E  D P  G VVA GPG+ HP T  +I   +  GDT+LF  ++G KVKYC +DH+ +  D+++       +T+  +  VRD+ ++   +   ET  GIV+    ++ +E  +QG V+A+GEGR  + G + P P K GD V + +Y  ++++ +G     V   DC+A++
Sbjct:   50 TLDNMVLDGPLQPLKDQVLVKLAGAEKQTKGGLFLTGEMTDKPTRGTVVAAGPGKPHPYTDVMITNPIKAGDTILFGSYTGTKVKYCQDDHVMLSMDEVLAT-----VTDKGVVPVRDRAMLKPIEKPVETSTGIVLTKEASKAQEVPNQGEVIAVGEGRFTAKGTLDPVPMKVGDKVMYTKYGGIDVEYEGQKLVFVFAADCLAKY 251
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A7S2YEM5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YEM5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 8.270e-36
Identity = 78/207 (37.68%), Postives = 127/207 (61.35%), Query Frame = 2 
Query:  287 TLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVY-RGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 904
            TL+   I   +QP+ N++LVK+  A  +T GGI+L  +A+    EG VVA GPGRTH  +G ++ M V+ G+ V++ ++ G ++   G+ H  I DDD+++ +    +L+ +++ +V D VLV  +K E  TD GI+IA S+++  + S G V  +G GR  S GE++       D VKF ++A  E++I G  Y+VVRM D +A++
Sbjct:   40 TLDGRKIKGDVQPLNNFLLVKVAEAQDQTEGGILLTGKAKIQKTEGTVVAVGPGRTHQDSGIVVEMPVAAGEGVVYGQFDGTEIDLDGKKHTLIRDDDVMVKFDASKDLSIDNVDVVADNVLVYVDKKEQSTDGGILIARSSSQDSRPSTGLVKKVGPGRVASNGELMAMDVAVDDMVKFRDFAGNEVEIGGEEYSVVRMADILAKY 246
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Match: A0A0M0JKE7_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKE7_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 8.770e-33
Identity = 73/205 (35.61%), Postives = 118/205 (57.56%), Query Frame = 2 
Query:  290 LEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 904
            L + ++  P++P+GN +L+K+     +T GG+ +P    + P EG+V+A GPG  +P TG  I   VSEGD VL S ++G KV+Y GE H+F+  D L+  +   ++T  + + + D+VLV   +  +ET  GI +A   AE E +  G V A+G+G+    G + P     G++V + +YA  E K  G  + +V   +CIA+W
Sbjct:   36 LNNYILPGPVKPLGNQVLIKLRKIEEKTGGGLFVPTAETEKPKEGMVIAAGPGSVNPETGETIVNPVSEGDLVLLSDFTGEKVEYNGEKHIFVNADSLLGKFDKQKVTLEAFEPIGDRVLVAVAEAATETTTGIALA--LAENEDSCMGEVAAVGKGKY-YNGALRPVGIAKGESVMYDKYAGAEAKFDGKKFKIVSEKECIAKW 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K9_ECTSI8.320e-18297.84Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A835YHA6_9STRA1.380e-7355.46Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A8J2WID0_9STRA1.280e-5446.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9UAA2_9STRA6.940e-4642.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2XTD7_9STRA1.010e-4140.85Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0J0F3_9EUKA2.500e-4040.61Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2E919_9STRA6.700e-3940.91Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A8J6CGT7_DIALT6.810e-3736.23Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S2YEM5_9STRA8.270e-3637.68Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A0M0JKE7_9EUKA8.770e-3335.61Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig90contigEcto-sp6_S_contig90:173022..181992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score165.2
Seed ortholog evalue4.3e-38
Seed eggNOG ortholog159749.K0R458
Model size1524
KEGG koko:K04078
Hectar predicted targeting categorychloroplast
Exons7
EggNOG free text desc.Belongs to the GroES chaperonin family
EggNOG OGs2XGQX@2836,COG0234@1,KOG1641@2759
Ec32 ortholog descriptionGroES (chaperonin 10)-like
Ec32 orthologEc-05_006580.1
Cds size837
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig90.18328.1prot_Ecto-sp6_S_contig90.18328.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig90 173107..181390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350551.5300703-UTR-Ecto-sp6_S_contig90:173021..1731061682350551.5300703-UTR-Ecto-sp6_S_contig90:173021..173106Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 173022..173106 +
1682350551.604774-UTR-Ecto-sp6_S_contig90:181390..1819921682350551.604774-UTR-Ecto-sp6_S_contig90:181390..181992Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 181391..181992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350551.539732-CDS-Ecto-sp6_S_contig90:173106..1732821682350551.539732-CDS-Ecto-sp6_S_contig90:173106..173282Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 173107..173282 +
1682350551.547668-CDS-Ecto-sp6_S_contig90:176142..1762811682350551.547668-CDS-Ecto-sp6_S_contig90:176142..176281Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 176143..176281 +
1682350551.5552406-CDS-Ecto-sp6_S_contig90:177333..1774681682350551.5552406-CDS-Ecto-sp6_S_contig90:177333..177468Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 177334..177468 +
1682350551.564164-CDS-Ecto-sp6_S_contig90:178860..1789321682350551.564164-CDS-Ecto-sp6_S_contig90:178860..178932Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 178861..178932 +
1682350551.574251-CDS-Ecto-sp6_S_contig90:179630..1797291682350551.574251-CDS-Ecto-sp6_S_contig90:179630..179729Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 179631..179729 +
1682350551.5846136-CDS-Ecto-sp6_S_contig90:180506..1806501682350551.5846136-CDS-Ecto-sp6_S_contig90:180506..180650Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 180507..180650 +
1682350551.5948064-CDS-Ecto-sp6_S_contig90:181318..1813901682350551.5948064-CDS-Ecto-sp6_S_contig90:181318..181390Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 181319..181390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig90.18328.1

>prot_Ecto-sp6_S_contig90.18328.1 ID=prot_Ecto-sp6_S_contig90.18328.1|Name=mRNA_Ecto-sp6_S_contig90.18328.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=279bp
MRYSAVSFAASCAAMLASSGAFLAPSLNVGVLPRSASSRSTNQQQQHSSG
RAVARRTTSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGI
VLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRK
VKYCGEDHMFIMDDDLVLVYRGPELTENSLKMVRDQVLVVTEKGESETDA
GIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYA
PVEIKIKGSYYAVVRMVDCIARWEGESI*
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mRNA from alignment at Ecto-sp6_S_contig90:173022..181992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig90.18328.1 ID=mRNA_Ecto-sp6_S_contig90.18328.1|Name=mRNA_Ecto-sp6_S_contig90.18328.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8971bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:173022..181992+ (Ectocarpus species6 EcLAC_371)
AACAGATAGACGCAGCACCACATCAACCACAACTAGGAGCAGGAAAGGAG
CCTCAGAGGGTGGAGAGAAAGCTTCGTCACTTAACATGAGGTACTCTGCA
GTGTCGTTCGCGGCATCTTGCGCGGCAATGCTTGCTTCGAGCGGTGCCTT
TCTGGCACCGTCGTTGAACGTCGGTGTGCTGCCTCGATCAGCCTCCTCAC
GATCCACCAACCAGCAGCAGCAGCACTCCTCCGGAAGAGCAGTGGCGCGA
AGAACCACTAGGTGAGCTAGAGAGATGGGGCGCGGAGAGTAGCCGACGTC
GTGATTGACACGCATCAGCCACAAGCAGTTAACATTGACGCAGTTCCATC
GCTTTTTGGCACGTAGCTTCTGGACGCAGCGGTATTGTGTGTGCAACGCG
GGCTGAACGCCGTACATGTGTCGTGCCGTTGCTGAATACAGCAGCACTGC
TGTAGCACACGCAACGCCTACAACTCACGGGTCTTCCGACTCGCTCTCCC
ACCCATGTCTCCGGCATACCCTGCCGCTTTGTCGGCATTGGAATGGGAAG
TGTTTATCCATTCTTGCTATTTCGGTCCAATACACGTAGATGCGCCAAAG
GCACATTACACAACACGTGTGTTCCGGTGCGAGCGGTTCAGGGTATCCCG
CGTACCGCAGTGTCCTGCCGTGTAGGCGTGCAGGGCCCACAACCACAGCA
GAAAGTCTCCAGTAAGCAGGGAAACACTCTTCGAGCTGGTTTCAGTAGAG
AGGTCTCGCGATTTTCTCTAGCAGGCACTGCTGCTGCTCTCAGTTGTTGC
TGCGCTTGTGACGTGCTTGCTAAGTGGTGCCGACGGTTACTTCAATTACT
GATACCGTATGTTGCGTATGATATCACACCCCCTGGATCGATTTTCGAGG
CTCGAAATCTCGGCAAGAAAAGCAGTGACGGTGCCGAAAATAGCGGCATC
GGAACCGCCTCGTCGAGAGATTTCCGAAAACGTATCCTTTGATTCCGACA
TCTTCTTGGTCGCCGAGTAATCGAGCTTTGAAAATCGGTCCAGGGGGTGT
GATATCTTATGCAACCCACGGTAGATGCCAGCACTTTTTTCCTGCAAAGG
TATCCCGGTTCTTTGGTTAAGATCAAGAAACACCAGTTGCACCGGTGGAT
TGAAGCTTTGAGACACGTACGCGCGCGCACATGAGGAGATCGGTGAAACT
TCTACCGTGCACTGTCGAGCTTGGACTAACGCGACAGCTGTCCCGTTTTC
AGAGACAAGCAACGGTAGAAAATAGAAAATTAACTTTGCAGATAAATACG
AAGCACCTCTGCATGGGTACAAACGACAGCACTAAATTTACACCGCTTTT
TATGGCAGCACAATTTGCAAGAAAAGCTGTTTTTCCTGCAGCTTTTCCTC
CAAACTTTGTCAATGGAACATTTGATGCACGCTCTTTATGGGACGAAGAA
AGTTTTGTGCACGGGACTGGCGGAATGCGGAGGCGTGATCTTTTCTTTTT
TTAGCAACGGAGAAAGGCTCGCGCCTTTCATATTGCACGACGAAGGAACC
GGTCAATGCGTGCAAGAGAGGGTAGTTGCAACCTTTTTTCTCCACACTCA
CGATACCCCAAGGCATCTAACCTGGTACCAGAAAGATGCTGGGTAGAGCC
AACTCCCTCGGGGTGGCATTGCTGTTACTGTTGCGTTCTCCTTCGAAAAT
ATTTCGCTGAAAAACCAAACCATGCGCACACAATCCCTGCGAACTTGAAC
CAACTACTCCCTGCCGTGGGTACCTTTTTTCCCGATGCGCACGAAATCCC
ACGGCACGAAACCTTAGGCATGAAAGATGGAGCAGAGAGCTACCTCCCAC
CGGGCGGCCTTGCTATTGTTGTTGCTTCTTCCTTCGGAAAGTTGTCGGTG
GATAACCACAAACCCGTGGCGGTCAAAAACATCGAGCTTGAACTAACCGC
TCGCGGCCGTTGACGGTTTTGCACGGCACAAATTTTTTTTCCCGGCGCAT
TCGGCACCTCACGGCCCCAAACCTTGGCATCCCCCAACAGCCCACGGCAT
CACCTCCTTCCAGATACCATTTATGAGGCAACTCGTTAAGTATTCGTCGA
GATATTGGTGATCACAGCCTTCCCACAATCGATGCTGGAGAGGGTCTACG
TGTGCGGCTGGGGTAGCAGCTTGACGTGAACCGGTATTGTTTCCGCCGTG
CAGCTTTTCTCGTCCCTTCCCGACTCGAGAAAAGCTGCAAAACGTTTCGG
CCAGATTGCAGCTTGTCGATCCGGAAAAAAGTTGCAGAAGTTTTCGTGCA
ACTTTCAGCTCCCGTACTGAGCGTACATTTGCAAAGCTGCAAGAAAAGTT
GCAGAAATGCAACTTTTTTTGCAGCATTGTGCTGCCATAAAAAGCGGTGT
TAGTAGTAACAAACGGTTGTTTCAGCATGCGCGCGTCTCTCCTTTGTATG
TGCCAGGCTTTGTGTTGGACGCAGTAGTCGTTGCTCGCGACTGCATGTAC
ACGGTAAACAAGTCGAACATTTTCATGAATTCCTCCTGGAAACTGAGAAA
CTACACTGCGTAGTAGCAGCTGAGGGCTGCTGCCCCGAATCGGGACCTCT
AGACTCGGCAGTGTAGCTTGGGCAGTGCCCTTCGTGCGTTCGATTGAGCC
CTCTTGTTTTGACTTCCCCAGCACCCATCCACAGCAGTTTCGCTTAGCTC
CTGGTGTCTCTGTGGTTCTTGTTGCTGTAGATGCGTGTTTTGAGACCAAG
GAAAATCGATGTTATGTCTTGGCGAAGGAACGGACATCAATGCCGGAGGG
TGCCCCGTAGAGCATAGAGGCGTACGTACAAGCAGTGTTTGGTTGACGCA
CCATCAAGCCAGCGAAGGACTCCCTGACCGTCAGTCTGGAGGGCATTCCT
GAGAGTTTGCTCATCATCGGTTTTGGGGGGTGATTTCGTGGAAATTGTCA
ATACGCATGCCTTATAGCGTAGACGATGGTTGTTCCGTAGGTGGCATCTT
CTACTGATCGTTGCGACCCTGTCACCCTATCCCCTTTTTGTTTTGGCGAC
CTCATGTTCCCGCCTTGCTTATCCCCTCTCTCTCACCTTTTTGTTTTTTT
CTGGATCCACAATCGAATCAGCCCGTCCATGTCCTCGCTGGTGATCACCC
TGGAAGATGACGTGATCGACAAGCCTCTCCAGCCCGTCGGCAACTACATT
CTCGTCAAGATGTTCGCGGCCGTGTCGAGGACGGCTGGCGGTATCGTTCT
CCCGGACGAGGTACAGACCGGACCGTCAACCACTGTTGTATTCTCGCGAT
TCGACAACGTTGTGTTGCGGGTGTTTCAGAGCAGTCCCGGTGGCGGACTA
TCCTGTAAACGACTTTTCGGCTTGGGTTCTTTGTTCTGGGTGTTAGCAGT
GAGTGACGAAAATGATACCTGTGCAACACGCGGGAAGAAAAAAGCACAGG
AGACGTACTGCGGCGGGTGGGTGTTGTAGATATGGTGTGCGCCGCTCAGA
CTGACTCAAGTCTGTTGCTCGATGGTAGAGATTTTCCCGGCTACTTGGCG
AGCTTCTAGTTTGGCAAGGCGTGGAGCGCTTCTTGCTAGGTACCAGTCAC
AAACCCCGGTCGGTTCTGGGTTGGCTCCTTTACGTTATGCCCGATCGTCT
TGAAGCGGGAGTAGACCAGCGCAATGGCCTCCTTGGGATGTTGTCAATCG
CCCGTCAAATACTTGGCTGCCATGAGTCCTTCCGAGCCACAGAAAGCATG
CAGTCGCTTTATTTTGGAAGAAAAAAGGTTTTATGAGGTGCGCAGGGTTC
AAACAACCCGTTCATGTTGGCATCTTTGGCTTTCAGCCGTGCAACGCTAA
CCGGGTGGTACTGCTGGTGCTCCCATATAAATCCTATATTGACTAATCAT
CGGAGATGGCCTCACGACCGATAACTTTTGCCACCCTCTATTTCGGAAGG
GAATTGTCAAATCGTTACTTGGTGGTTCGGGAACACACGGTTTCTCACGG
CGTGGCTCGAGGTACACCTCCTATACCTATACCCCTCGGCAGTCATACCC
CCGGGTTACGTACGTGTCTCATTAGAGAGCCAGGTCAGGCGCGCGATGTT
GAGGTCTTGGCGTCCGGTGATGCGAGTGCAGGGCGGTCTCTGCAGAGGCC
GATCCCACGCAGCTATGACTTTCCCGCCCCCCAGAGGAAGACCCACCCTT
TCCCATGCACCTGCTGTGCCCCCTTGGTATCGAAAGAGCATGTACCGCCT
TCTCTCAGCTTCGAACCGCCAGCCCCCCCCCCCCCGCCGGTGCCCACCCG
TGGTGTTTCTAGGCGCAAGACGTACCATGCGAAGGGCTGGTGGTCGCCCA
CGGTCCCGGAAGAACGCACCCTTTGACGGGAACGCTGATCCCCATGTGCG
TGTCGGAGGGGGACACCGTTCTGTTCTCGAGGTGGAGCGGCCGGAAGGTG
AGAGGGGGGGCTCACGCACAGTTTTGATGTACGCAGGGTCGCGACGGTGT
GCTGCAGGTGGATCCTCTTGTGTGTGGCGCGTGTGGTGGGGGGGTGTGGG
GGGGGTGTACTCATAGTCGTGCATGATGTAGTCGTTAGACCATTGGCCTC
GCATCCCTGCAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGG
CTCTCACATCACCAAGCGCGAAGCTCCGTGAGGTATTCGGCGAGTCGCAT
GAAGGGTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTT
CCTTGCGTACGGATGACAGCTGCGTACGACTTAAATTATTTTCTGGTGCT
TTCACTTCCAGAGTTGTAAGCTCTGTGTAACTGCCTCGAGGATGCTTGAC
CAATTTGGCACAACGTGCGATTATCCCCTTTGCGCGGAGTGAGGGTTCTC
GACCCCGCACAACACAATCTACTAGACCACCATTCATGGTTACCGCACAA
ACCGAAGGCAAAAAAAAATGCGGTAACCTGGTTGCCGAGCTCACGAAGTG
AATCGGCTTGTTTTGTAACATGCTGCCAAGCGACGAAAACCCAACCCCGA
TGGCAAACATCTCGGGGGGGGGGCTTGTTTTATAACGTCGTTGCCAAGCG
ACGAAAATCCAACCCCGATGGCAAACATCGAAGGGGGCGTGTGGTGGGTA
GGGAGGGGTAACGCGGTAGGGCACGGTGCTCGTAGCGCTAGCTGCATGTA
GCGGGAAAGCCGTGAGTATGGAAGAGGTTCGGCGGCCGGGATGTCTACCA
GCACGTCGCTCGCGGTGAAGTGCAGTAAACCCATCTTGAGTCTCAAACAA
AGAGTGTGGGAAGACGGCGGTCATGGATTTGGTGAGAGAGGAACGAGGGG
CTTCCCGTCACACCATAAATCGCGAACTTCTCCAGGTGGACCGGCTGGCG
GCACGTGGGATTCTGCTCTTGCGGCGGAGGAAGAACCCCGGTTTTCGCAC
ATGCATATCATTTTGCCCGCAATGCAACGCGACAAAGTATGTGGCGTCTG
GAGATGCGTTTTATTGACCGCATTGCTCCTACCGTTCGAGCCACTTCTTT
CCTCGCTGTGTCTTTTGCTGCTTTACTTCATTTGGCACGATGCGCACACT
AGACATTGAAACTGCGCGAGTCGTACGAATGCCTGGTAGTGCCGTAGAAC
GAGCAAAATTTGAGATCTCCGAAACTGCATATCAGAACTATTGATGAAGG
ACCATCCCGCAGCCATTTCCCTGGATTTATGCCTCTGTCTCCGAACCGTC
CCGTTTGGTTGCGCGTTGTTGTAAAGCGTTGCATGCTTGTCTCACGTTCG
TTTGTAATCGATGCCCCTTGTTCGGTTTTCTGATGCAAGGTCAAATACTG
CGGGGAGGACCACATGTTCATCATGGATGACGACCTAGTGCTGGTCTACA
GGGGGCCAGAGGTGAGCAGCAGGCTTGGTGAGGCCTGTAGGACCGGGTGA
TACGAGCGCCGGCGTAGGGTACGCTGACTAGCAAGTGTTGTCGGTTGTGG
CGCTACAGGAGTGTTGTGACGTCAAATCGTTGCTGATCCCGGATGGCATG
TTCAGACCCGGAGCAGGCGGGGAGACTTGATTACCCAAAAAGATTACGCA
GCCGTTTCTTCCTCCCGGAGAGGGGTAAGTTGGAGTAGCCAGAGTGATGT
TGAACACGCTTGGCTCGTCGGAAAGGGTGATGGGCCCTGCTGAAGATTTC
AGGCATACAGCGCAGAGGAATTCCACGGTGTATATGTCGATGATTGATCT
GTGTGGGGTATTTTCTTATTTTTGGAAAGCCGCGGCAACCAATTTTGGCA
CAACCCTACGCGTACATACCGACAAACTTTTGTTTACTGCGCTCTTCTAT
TTTTCATTCCACGGCAGCTTAGTCTACGCGGAAGCACACGAGGCGGTTGT
GTCATCATACAACACCAACAGCAGTCAAAGCCCGTGACGTTTTTTCTTAA
TTGTCAAAGAGTGGTACGATTTTCGTATCGTACTACGTGTACCATTTTGC
GCGCAATTTGGTACCTACGTGCATCGTTTCTCATGTACCGTTTCTCACGC
TACTACATTTTCCTCTCTCGTTTATTAACGTTTGTTTGTTTGTTTGTTTC
TGCCCTCAGTTGACGGAGAACAGCCTGAAGATGGTGCGCGACCAGGTGCT
GGTGGTGACCGAAAAGGGGGAGTCCGAGACGGACGCCGGCATCGTCATCG
CGGCCTCGGTGAGTTGTTTGCGTCTTGCCTCAGGCCCTCTCGGCTGTCGG
CTGCCGTGTTCTGAGGGCGTTGGATGCGACTTATGGTGGTTTCGGCGTTA
CAGCCTCCGCCCATGCAGTATGGTCGCTGACCGAGGCCGCGTTGTTGGTG
TTGCCCCGACAACAGCGGGTGCCTCGTTTTGTTGTTCTTGTTGTTGTTGA
CGGCTGCTCAGGTGATGTGTTGTTGTAGTTGTTGTCGTCGTCGCCATGAT
TTTTTTTTTGCCGCACGACTGTTGTGGGTGCATCTGGTCTCGTGTACGCC
GGCGGCGTGTTGCGGCGCTGAACGCGCGACTACTGACGAGTGATGGTTTT
TCTGTTTCGATCTCGTCGTGCGTTTCGCTGGTGAAGCTACTCGCGTTGTA
GTTGGTTATGACAGACGGGGCACCATGGGTACTCATGATGCTTTGTTCAT
TATGTTGGTTGTCTTCGTGGCTGTCGGCGCTCTCGCGCAATCTTCGACCC
ACCCGGCGGGGCAGTTTTGGACTGGCCGAAAGCACGAAGTTGCGACCTCC
TCCCTTCCTGCCGTGCTTCTTTTGCTAGTTCCCGGCGTTGATTCCGGATA
TGCACATACATCCGCACGCTGCGGCTTTGCGTGGAAATACCACGTGCATC
GTCGCCCCCCCGCCCTCCTTATCGCTCGAATAATTTAGGTCTTGTGTTGT
TGTTGTCCGGCCGGTGATGCTCCGATCCTTTTCTCATCGTCGGTACAATA
GTCGGTTGATTTTCCCGTCCCGTCGTCGCGTGCAGACCGCCGAGAAGGAG
AAGGCGAGCCAGGGTAGAGTGGTGGCAATCGGAGAGGGGCGGACGGGCAG
CACGGGGGAGATAGTGCCGTGCCCGTTCAAGGCCGGAGACAACGTCAAGT
TCATGGAGTACGCCCCTGTGGAGATCAAGGTGTGTGGCATTAAAAAAATA
TATATTTCTAAATTACAAGCAAgagatggagtaaccattcGAGATACTGT
ACCACAGCAGTCGAAGAGGATGTGTTCAAGTCTCCACAGGGAGTGGGAAG
AAAACCTGCTGGATGCTGGGCTAATTCGGCGCCAATTTTAAGCCTATACA
TGTCCCTGGTACGCTGAAATTTTATCGGTGCCAGCCGGTTCTCATCGAAG
AAACATTTTTTCTCTTTGTTTGGCCCGTGCGTGTTGCGTGTGATTTTTTT
TTTTTTTTTGTGGTCTTGGGCTGGTGTTGGTGCATCTGTTTTAGTCATTT
CTCGAGTTCGATCGAGAGGTGCACATTCGGCGTGCTAAGTATTCGGTGGT
ACAATAGCGACTGTCGAGAATCACTTTGTTTCGTGTTTCGACATTGTCAC
ACACACACGTCACATCACATTCGTTTTCGTTCGTGCAGCGGCTGTACTAC
GTACGAAAACGTGGTCGGTGTCGCGAACAATGACCATTGCTACAGGGTTG
TGTTCGATCCTAAGTGAGCCCTGCCTTATTTCGTTACCCCACATCTTCCG
TACCTGTCCCTTGCGCCCACCCCGTCTATGCATGCCTCGGGGCATCGCCC
GTGTGTTCCCGTCTTCGCGTCGCCCTGATCGCATGTGTGTACTGCAGATC
AAGGGAAGCTACTACGCCGTGGTGCGGATGGTGGACTGCATCGCGAGATG
GGAGGGAGAGTCCATCTGATTGGCGCAGCGGACGCGTATCGTATGGATAG
GATTCCGGTTCCGTACTAAAACGAACCCGTCCCGTGTAAGCTTGGTTTGC
GGATGTAGCGGTTTGAACGGTGTCGGTTGGGAGATGAGGAATTATTTTTG
GGCGGCGAAAGGCTGATGAAAGTGCTTGCCAGGAACATTGGAAATTGCAA
AAATTGAAGTTGAAGTTGCAAGACCACTGTCTGATTGCATGGGCATACGT
TGATTAACACGCGGCGGCTACCTGCGAAATGCTGGAAAATTGAAGCAAGA
GAGGTGAAATGCATCGGGATCGGGCCACGCGTAACGTCGTGGTATTGGTC
CTTTGGTCCTTTGGCGTGTGTGTCCAGCCGCCGTCCTTGGGCGTGTGCTT
GGCTGTTTGCCCGATTTGTGTCCTTGGGAGAACAAAAAGCGCCAGATTAC
CCAAGACGACAGGGGAATCCAACGAGATGCCGGGCCTTAATCGGCAGCTA
GACACGTGCTGTTATGTTCTTCTGTTTCGTTGCGCCATGCCATTGCCCCC
TTCGGAGATTGCACAATTCTTGCCCTCGGGAAACGACCGCCACACACACC
ACCATCGTTGAGCGACAGTCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:173022..181992+

>mRNA_Ecto-sp6_S_contig90.18328.1 ID=mRNA_Ecto-sp6_S_contig90.18328.1|Name=mRNA_Ecto-sp6_S_contig90.18328.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:173022..181992+ (Ectocarpus species6 EcLAC_371)
ATGAGGTACTCTGCAGTGTCGTTCGCGGCATCTTGCGCGGCAATGCTTGC
TTCGAGCGGTGCCTTTCTGGCACCGTCGTTGAACGTCGGTGTGCTGCCTC
GATCAGCCTCCTCACGATCCACCAACCAGCAGCAGCAGCACTCCTCCGGA
AGAGCAGTGGCGCGAAGAACCACTAGCCCGTCCATGTCCTCGCTGGTGAT
CACCCTGGAAGATGACGTGATCGACAAGCCTCTCCAGCCCGTCGGCAACT
ACATTCTCGTCAAGATGTTCGCGGCCGTGTCGAGGACGGCTGGCGGTATC
GTTCTCCCGGACGAGGCGCAAGACGTACCATGCGAAGGGCTGGTGGTCGC
CCACGGTCCCGGAAGAACGCACCCTTTGACGGGAACGCTGATCCCCATGT
GCGTGTCGGAGGGGGACACCGTTCTGTTCTCGAGGTGGAGCGGCCGGAAG
GTCAAATACTGCGGGGAGGACCACATGTTCATCATGGATGACGACCTAGT
GCTGGTCTACAGGGGGCCAGAGTTGACGGAGAACAGCCTGAAGATGGTGC
GCGACCAGGTGCTGGTGGTGACCGAAAAGGGGGAGTCCGAGACGGACGCC
GGCATCGTCATCGCGGCCTCGACCGCCGAGAAGGAGAAGGCGAGCCAGGG
TAGAGTGGTGGCAATCGGAGAGGGGCGGACGGGCAGCACGGGGGAGATAG
TGCCGTGCCCGTTCAAGGCCGGAGACAACGTCAAGTTCATGGAGTACGCC
CCTGTGGAGATCAAGATCAAGGGAAGCTACTACGCCGTGGTGCGGATGGT
GGACTGCATCGCGAGATGGGAGGGAGAGTCCATCTGA
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