mRNA_Ecto-sp6_S_contig9.18321.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18321.1
Unique NamemRNA_Ecto-sp6_S_contig9.18321.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:3026805..3030597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size729
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.658441-CDS-Ecto-sp6_S_contig9:3026804..30268801682350514.658441-CDS-Ecto-sp6_S_contig9:3026804..3026880Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 3026805..3026880 +
1682350514.6691463-CDS-Ecto-sp6_S_contig9:3029946..30302391682350514.6691463-CDS-Ecto-sp6_S_contig9:3029946..3030239Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 3029947..3030239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.6802397-UTR-Ecto-sp6_S_contig9:3030239..30305971682350514.6802397-UTR-Ecto-sp6_S_contig9:3030239..3030597Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 3030240..3030597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18321.1prot_Ecto-sp6_S_contig9.18321.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 3026805..3030239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18321.1

>prot_Ecto-sp6_S_contig9.18321.1 ID=prot_Ecto-sp6_S_contig9.18321.1|Name=mRNA_Ecto-sp6_S_contig9.18321.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=123bp
SLGGSFGNLRSGPTINAKQDRHSRVGDPLETACAGGWTRGRAALGRRGRR
LWWRRRPRWRRARARRTHGPRRPGPGRWSPRKRLPGSGAPPCRSKPSLVP
LRTLVACMRVCYLLMYILASTV*
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mRNA from alignment at Ecto-sp6_S_contig9:3026805..3030597+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18321.1 ID=mRNA_Ecto-sp6_S_contig9.18321.1|Name=mRNA_Ecto-sp6_S_contig9.18321.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3793bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:3026805..3030597+ (Ectocarpus species6 EcLAC_371)
TCGTTGGGGGGGAGTTTCGGGAACCTTAGGAGCGGTCCGACGATCAACGC
AAAACAGGACAGGCACAGCAGAGTAGGTGGGAAAACACGACAGAAGCATG
CACACCGGCGGCGATAGCGTCAGCTGGTGTTGCGTGTTCGTTTTCTGGCT
GAACCTTGCGCATTTCGAGTTTGCGATCGTGTTGACGAAACCACGTCGCC
CGCCCTGTCCTACCGGATAGACTTTTTGTCGTGCGTGATCCTAAGGGCTT
CGTGCTGCGTCCAAGGCTCCTTCTTGCAGGCGGTGTCCTTTTGTTCTTTT
TTTTTCGTTTGGTTGGTTTCCGGCTAAGTCGGCATGTCTGTTTTTTTTTT
TTTTTTTGCGATCTCCTCCTGTTCTTTCCTTCGAACAGTCGAGGATATTG
ATGGTGCAGTGCGATCGACGCGGAAGTGCACCGCGGACGAGTGTTATCGC
TACAATGGACCTCTTCGACGACAAGATAGACGGTGCGTATCGCGTATCGT
GTCGTCGCCTCGAACAGACATGTGTCATGTGGGGtGTACCTATAGCGAGC
GGCTCTCTTGCGGCGGTAGGTCAGTTGTGTGTGCACGGCAAGGCATCCGG
GATCGTCAGCAACCATGATGGTGGCGGTACTTTTTAAGCCCCCAACCCCC
CCAGGGTTAGAGCCTCTCCTCGCATCATGTGCTGCCCCCGTTTTGTACTT
TGGCTGTCCTGTGTTTTTTTGGTCGGTCTCGCCTCTCCAGCCTGTCCTAA
CTTAGTCTGTGGTTTCCCCTGCACGTCAACCTTGATGAGATGTACCATGT
CGACCCTGCCTCACCCTGCTTATCTGCCCGCAGCGTGCAACCGCCGCCGG
CAACTCCGTGGCCGGGACCACTGTGGCGGCGGCAACGGGGGGAGCAAGGG
GGGGGCGTCGAGGAGGGGGAAGGAGACGCGGACGATGGTGTCGATGTGAG
GGAGAGAGGGAGACGATTTCGTTTGCGTGACCTGGGGTAGAGGTAGCCCT
TGAGGCTGTTCATGGAGAAGGAGACGATCGAAGGGTACGCTCGGGATGGC
GGGGTGGATGGGAGGGTGCAACAGGTTTGGATTTTGAAGGCGTGTTATTA
TTGCGCTCGAGGTATCTCGGCGGTGGCGTGGCGTTGAAGTGGGGGAGGAG
GGGTTGATTGTGAAAATCTTGATAAGTGTTGAGAGGCTAGAGGAAAAACA
ATCTTGCGACCGTTCTACCGATCTACGACCCCCCCCCCCTcTTTCTCTCT
CTCTTTCTCTCTCTCTCGTGTGGGGGTATTTCGCCACTCGTGTGCGCGCT
TTTCTCTGGTGTCGCGGTATTTCATCGTCGCCAATACCACCCCTTTGACG
AACCCGCTGGCTGGCAACTTCTTTCCCAATCTTCAAGCAACTGACTCCCG
ATGATTTGATGTGTTTTTTTTTTTTCTGAACTATCTTAGCGGGCGGACGC
ACCCATCTACATGAGAACCGTTTTCGGGGAAGCTTGCGTCGAACGGTGTG
CTCCACCTGAGCCGTTTGAAAGACGGGTCTTGACACCTTCCAGACAAGGT
TAGGACGCGGTGCGACTTCCCCACCCGACTGGGCCTAGAGCCCTTCGTCA
AAGATGTGAGGTGGGCGTGAACACAAGTCGAAGTTGTAGCCTGAGCCTGC
TGAGAACGAGTCCTATACCTTTAGTCGACCTTGAATCTATCGTTTCGCAA
AGCAGTCCCGGGCGACAGCAAACAAGTGTGAATTCCCGGAGGACCGGTAT
TAGTTGCTGTACGGCCACGCTTCTTTCTCACCTACCCAATAGTACGCTTG
GTCGTACCGATAAATGTATTTTCAAGGCCGGCGCCTGCTTACTTCACAGT
AGCTGGTCGTCTTAAGCCGCTGTCTGTCTGTCTGTCTGTCTGTCTGTCGT
TGTTGTTGTTTTCCTTGTCTTGAATGTACGACTTCGCGTTCACGTCGACG
TCTATCCGAATAAAAAAAACAAGTCCTGGGCTAGTCGTTGCCGGTCCCCA
TGAAAGCTTACAGTACCTTCTCCTGTCCGCATGCCCCCGTCCTTTCCGGT
GCGGTTTTTGTACCATGGAACCTGGCTTGGCGAGAGCGCGCGTGGAGGCT
GCGGGACGACACGGGCCGGCGGGCGCTAAGGTAAGAGTCGACCGATAGCC
GATACATTGTACACAACACCGAAAAATTGTCATGCCGCGAGAGTTTAAGC
TCGACTAAATTTGCCACGGCGGAAGTGCCCGGCCGTGTCTTGTTGGTAGA
GTCCTGGTTTCTGGGGAATAGATGCTTTGGTAGTCCAGAGAACCAGGTGC
CAAATGGTCACTTGCGCGATGATATGTACACAAAGGGGTGAATGTTATAA
GATTCCAAGTTACTTATCGGTGGTGGTCGTAACTCATACACGGGTGGACG
CTACCCCCCCCCGCTGGACAAGGCCTAGGTTCCACAACATaAAAAAAGGT
TTTACCTTGTTCAAGGTAACCCCCCCCCCAAAAAAAAAAAAAAAGTGCAC
ATTAGACAAGGTCCGAAAAAACGAGGACGCTGGACACCGTCCCCCTACCC
AACCTTGGGCAAGGTTCAGGATTTCCGAGAGGGTTGAGCAGGGTTCGAGG
GAGAGGGGTTGCCCAAAGTTTGAACAGAAAATGGGCTTTGTGCAAGGTAA
AAACGTTCGCATCAGACAAGGTCTGAAAAAACGAGGACGCTGGACAGCGT
CTCCCTACCCAACCTTGGGCAAGGCTCAAAATTTCTGATAGGGTTGAGCA
GGGCTCGAGGAAAAAGGGTTGCCCAAAGCATAACCAAAGAAAATGGGCCT
TGTGCAAGGTAAAAACGTTCGCATTAGACAAGGTCCGAGAAATCGACCAT
GTTGGACAACGTCCCCCTACCCAACGTTGTGGAGGACTCATCTAAGAGTT
TGCACCCACGTACTACAACAACTGTACGTCTCGCATGAAACAAGAATTAC
CTGACACGAGGGCATTCTCAACTACTTGTTTGCTCGTCCATCGCACGACT
ACTTTGCCTACGTTGTGGACACAGTTTTCAATTTTCCACCACTTTTGTCG
GGGACACACTGGAGTGCAGGAAGAGCTAACGCCCTCAGTCCCCGCCCCCC
CCGCCCGTGGTGAACCTGGAACGCCTCCTGCGGGACAAGAAGGAGACCCC
CTGGAGACCGCTTGCGCCGGCGGCTGGACGCGGGGTCGAGCAGCGTTAGG
GAGACGCGGGAGGCGTTTGTGGTGGAGGCGGCGGCCGCGTTGGCGGCGAG
CCCGAGCGCGGAGGACGCACGGGCCGAGGCGTCCAGGACCGGGGCGCTGG
AGTCCGCGGAAGCGTTTGCCTGGGTCGGGCGCGCCACCGTGCAGATCGAA
ACCCTCCTTGGTGCCACTTCGGACGCTTGTTGCGTGCATGCGTGTTTGTT
ATTTGTTAATGTATATTTTAGCATCGACGGTCTAACCGGCTGGCCGATGA
AAAAAAGTCGGTGCAGTTGAAACGTGGCCCACAAAAACAAACGTGGTGCT
GTATAATTTTGCGGCTGAACGGTAACCTCCAAGTTGAGTCGCCGGGACCT
CCACCGCAGCATCCTTCAAAGCGTTGTTTTCGGGTCCTCATGACGGAGAT
CACGGGGACGAGGCATTGACGGAGGAGGCGGAGGAATTTATGCCCGCGAT
GTCTCATTGCTTGCTTTTGGTTCATAGAGTACTGTGATCGTGATTGTGAT
ATGCTTGCTGGCCCAGGACGAGAGCCAGCGGTTTTCGTACTATTTGTGCA
AGGGCGTTTGGATTCTGCCGCTGCTGCCTCCCCACTGTCTTCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:3026805..3030597+

>mRNA_Ecto-sp6_S_contig9.18321.1 ID=mRNA_Ecto-sp6_S_contig9.18321.1|Name=mRNA_Ecto-sp6_S_contig9.18321.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:3026805..3030597+ (Ectocarpus species6 EcLAC_371)
TCGTTGGGGGGGAGTTTCGGGAACCTTAGGAGCGGTCCGACGATCAACGC
AAAACAGGACAGGCACAGCAGAGTAGGAGACCCCCTGGAGACCGCTTGCG
CCGGCGGCTGGACGCGGGGTCGAGCAGCGTTAGGGAGACGCGGGAGGCGT
TTGTGGTGGAGGCGGCGGCCGCGTTGGCGGCGAGCCCGAGCGCGGAGGAC
GCACGGGCCGAGGCGTCCAGGACCGGGGCGCTGGAGTCCGCGGAAGCGTT
TGCCTGGGTCGGGCGCGCCACCGTGCAGATCGAAACCCTCCTTGGTGCCA
CTTCGGACGCTTGTTGCGTGCATGCGTGTTTGTTATTTGTTAATGTATAT
TTTAGCATCGACGGTCTAA
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