mRNA_Ecto-sp6_S_contig9.18320.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18320.1
Unique NamemRNA_Ecto-sp6_S_contig9.18320.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:3024610..3025337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size288
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.6196837-CDS-Ecto-sp6_S_contig9:3024609..30247791682350514.6196837-CDS-Ecto-sp6_S_contig9:3024609..3024779Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 3024610..3024779 +
1682350514.6295545-CDS-Ecto-sp6_S_contig9:3025221..30253361682350514.6295545-CDS-Ecto-sp6_S_contig9:3025221..3025336Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 3025222..3025336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18320.1prot_Ecto-sp6_S_contig9.18320.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 3024610..3025336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18320.1

>prot_Ecto-sp6_S_contig9.18320.1 ID=prot_Ecto-sp6_S_contig9.18320.1|Name=mRNA_Ecto-sp6_S_contig9.18320.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=95bp
LQLWRWGGLPPSQGRSERGWIMGCGRACRGTLLTDAVLGAMEMPELQVGT
REVMLSWLVPSSWELPMVPRSCSFRLGEGHVFLSSSRRQRRTARR
back to top

mRNA from alignment at Ecto-sp6_S_contig9:3024610..3025337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18320.1 ID=mRNA_Ecto-sp6_S_contig9.18320.1|Name=mRNA_Ecto-sp6_S_contig9.18320.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=728bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:3024610..3025337+ (Ectocarpus species6 EcLAC_371)
TTGCAGTTGTGGAGATGGGGTGGTCTTCCGCCGAGTCAGGGTCGAAGTGA
ACGGGGCTGGATTATGGGCTGTGGGCGTGCTTGCCGAGGAACGTTGCTGA
CGGATGCGGTGCTTGGTGCGATGGAGATGCCAGAGCTACAGGTCGGCACG
AGGGAGGTTATGCTCTCGTGGTGAGTGGGTGATAGGAGGGAGAGGCAGGG
CGATAGAGGCCGGGCGAGAGCCACCCACAACAGTCGCCGGTCGTTGCCGA
TGTGCGGTACTAGTATTTTTCCTAGGTGCTTGTATTTTGGCGCACACGTT
TGTTTTTTCGTGGTGGACCGATGGCGCGCCGTCTCTTCGCTGCGGCAGAA
ACGGCAAAAACTTTGACGGTTATAGTAGGCGTTAGGGTTAGATAGAGGCA
AGTCCGTTGTTACTGGCATGGTCATTCAAAGACCGCGGGTGTTCCGATGT
ACGTGCGGTTTCTCCAGGCTGCCTTTTGTTTCCGATTCATGACAGGCTCT
AGTGAGAACCGTTTGGGAGCGGTTGACGCCTCTCCATCGATACTTATGGA
CCCCCTGCACATGCGTCCGCTCCAGTTAATATCGCACAAATGTGCCCCAT
GATTTAACGCAGGTTGGTCCCCTCAAGCTGGGAGTTACCCATGGTGCCCA
GAAGCTGCTCTTTTCGTTTGGGAGAGGGGCATGTTTTTTTGTCCTCTTCA
CGCCGCCAACGCCGGACAGCACGGAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:3024610..3025337+

>mRNA_Ecto-sp6_S_contig9.18320.1 ID=mRNA_Ecto-sp6_S_contig9.18320.1|Name=mRNA_Ecto-sp6_S_contig9.18320.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:3024610..3025337+ (Ectocarpus species6 EcLAC_371)
TTGCAGTTGTGGAGATGGGGTGGTCTTCCGCCGAGTCAGGGTCGAAGTGA
ACGGGGCTGGATTATGGGCTGTGGGCGTGCTTGCCGAGGAACGTTGCTGA
CGGATGCGGTGCTTGGTGCGATGGAGATGCCAGAGCTACAGGTCGGCACG
AGGGAGGTTATGCTCTCGTGGTTGGTCCCCTCAAGCTGGGAGTTACCCAT
GGTGCCCAGAAGCTGCTCTTTTCGTTTGGGAGAGGGGCATGTTTTTTTGT
CCTCTTCACGCCGCCAACGCCGGACAGCACGGAGG
back to top