mRNA_Ecto-sp6_S_contig9.18301.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18301.1
Unique NamemRNA_Ecto-sp6_S_contig9.18301.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18301.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI)

HSP 1 Score: 550 bits (1416), Expect = 3.750e-189
Identity = 367/377 (97.35%), Postives = 369/377 (97.88%), Query Frame = 1 
Query:    1 MNRKHSRRSRRRRECDRRDRTLRWPEALLAREYDEVVGAILAGGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPMFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDGYGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDWLERNRDWDLRELQGSGNVLEGRNEDKTFSNGSRRGNCNRLVPVSVVLDWATDPLFG 1131
            MNRKHSRRSRRRRECDRRDRTLRWPEAL AREYDEV+GA+LAGGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEP FARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDGYGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATD LERNRDWDLRELQGSGNVLEGRNEDKTFSNGSRRGN NRLVPVSV    ATDPLFG
Sbjct:  355 MNRKHSRRSRRRRECDRRDRTLRWPEALPAREYDEVMGAVLAGGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPTFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDGYGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDRLERNRDWDLRELQGSGNVLEGRNEDKTFSNGSRRGNRNRLVPVSV----ATDPLFG 727
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BLAST of mRNA_Ecto-sp6_S_contig9.18301.1 vs. uniprot
Match: A0A6H5L1T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T4_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 1.140e-141
Identity = 278/414 (67.15%), Postives = 288/414 (69.57%), Query Frame = 1 
Query:  109 VGAILAGGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------TLGFTPREDLLNSEPMFARGRLPKVLRATLAYIQDAEASAPQPQ---------SPTWTAQDGYGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDWLERNRDWDLRELQGSGNVLEGRNEDKTFSNGSRRGNCNRLVPVSVVLDWATDPLFG 1131
            +GA+LA GGDNS VPSCSALSTALFAATLASRYNDAAAVIRLLEV GRGIADV DDNGRTPLHHACRGDDAGLVRLLRRAGADPD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                 TLGFTPREDLLNSE MFARGRLPKVLRATLAY+QDAEASAPQPQ         SPTWTAQDGYGSE TPAT VSSRRS IGG  RHAFD NF+S  +PPSEGE PLQQI+TASASGKETEALHYYRHHAKG+AHATATD LERNRDWDLRELQGSGNVLE RNED++ SNGSRRGNCNRLVPVS+VLDWATDPLFG
Sbjct:    1 MGAVLAEGGDNSRVPSCSALSTALFAATLASRYNDAAAVIRLLEVCGRGIADVRDDNGRTPLHHACRGDDAGLVRLLRRAGADPDAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEDTPLHLAVGFSSVPNDRVGTCTHPNTFHPGNAINHVASEPSLGVRCLEYVHQGRRRSASFPTNTLDLGPIQVRHGNLSCVKALVEGGAKLSRRNTLGFTPREDLLNSETMFARGRLPKVLRATLAYVQDAEASAPQPQWQASAPQSQSPTWTAQDGYGSEDTPATAVSSRRSSIGGHFRHAFDANFDSDAQPPSEGERPLQQINTASASGKETEALHYYRHHAKGKAHATATDRLERNRDWDLRELQGSGNVLERRNEDESVSNGSRRGNCNRLVPVSMVLDWATDPLFG 414
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BLAST of mRNA_Ecto-sp6_S_contig9.18301.1 vs. uniprot
Match: A0A6H5L134_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L134_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.910e-8
Identity = 39/60 (65.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 MNRKHSRRSRRRRECDRRDRTLRWPEALLAREYDEVV----GAILAGGGDNSSVPSCSAL 168
            MNRKHS RSRRRRECDRRDRTLRWPEAL AR YDEV       +L  GGD   V   +A+
Sbjct:  355 MNRKHSTRSRRRRECDRRDRTLRWPEALPARGYDEVTISLAALMLTAGGDEVHVSDTTAI 414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FV96_ECTSI3.750e-18997.35Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L1T4_9PHAE1.140e-14167.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L134_9PHAE2.910e-865.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2807325..2809967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score562.0
Seed ortholog evalue2.1e-157
Seed eggNOG ortholog2880.D7FV96
Model size1134
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-14_000270.1
Cds size1134
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350548.8278682-CDS-Ecto-sp6_S_contig9:2807324..28074291682350548.8278682-CDS-Ecto-sp6_S_contig9:2807324..2807429Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2807325..2807429 +
1682350548.8369708-CDS-Ecto-sp6_S_contig9:2808104..28083771682350548.8369708-CDS-Ecto-sp6_S_contig9:2808104..2808377Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2808105..2808377 +
1682350548.8443797-CDS-Ecto-sp6_S_contig9:2808798..28089211682350548.8443797-CDS-Ecto-sp6_S_contig9:2808798..2808921Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2808799..2808921 +
1682350548.8519487-CDS-Ecto-sp6_S_contig9:2809108..28092881682350548.8519487-CDS-Ecto-sp6_S_contig9:2809108..2809288Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2809109..2809288 +
1682350548.8598201-CDS-Ecto-sp6_S_contig9:2809514..28099671682350548.8598201-CDS-Ecto-sp6_S_contig9:2809514..2809967Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2809515..2809967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18301.1prot_Ecto-sp6_S_contig9.18301.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2807325..2809967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18301.1

>prot_Ecto-sp6_S_contig9.18301.1 ID=prot_Ecto-sp6_S_contig9.18301.1|Name=mRNA_Ecto-sp6_S_contig9.18301.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=378bp
MNRKHSRRSRRRRECDRRDRTLRWPEALLAREYDEVVGAILAGGGDNSSV
PSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHH
ACRGDDAGLVRLLRRAGADPDAHDCQGNSPLAVAAATGSLACLQLLIQGG
SDVNSANEADDTPLHLAVRHGNILCVNALVEGGAQLSRRNTLGFTPREDL
LNSEPMFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDGYGSEGTP
ATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKET
EALHYYRHHAKGRAHATATDWLERNRDWDLRELQGSGNVLEGRNEDKTFS
NGSRRGNCNRLVPVSVVLDWATDPLFG*
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mRNA from alignment at Ecto-sp6_S_contig9:2807325..2809967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18301.1 ID=mRNA_Ecto-sp6_S_contig9.18301.1|Name=mRNA_Ecto-sp6_S_contig9.18301.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2643bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2807325..2809967+ (Ectocarpus species6 EcLAC_371)
ATGAACCGGAAGCACAGCAGGCGGTCACGACGCCGACGCGAATGCGATCG
ACGAGACCGAACTCTCCGCTGGCCGGAGGCCCTACTCGCGCGCGAGTACG
ACGAGGTGACGATCTCATTAACCACCCTGTTGTTGATTGCAGGCGGCGAT
GAAGTTCAAGTTTCCGTTACTACAGCTATTTGTCAACCTATTGGTAGCAA
TGCGATCTGTCACGCTGAGCAGCACTGAGGAAAACAGGACCAGCAAGAGG
CTATGATACGCTATTTGGGCCGGACCTACAGTGGCACCAAATCAATGCTG
CGTGGGGAAAGGGGGTAATCTCAAGTACCAAGCAAGTGGAGGTGAAGGGA
TTGTGACGAGGTTTCTCATTTAAGGCCATGATCGGGGCCATGCTGGCGGT
TTACGACACCGAAAACCAACAACAAATGACGCGTGGTGGGCCGCTCTTCT
TGTAGGCCTCTACGAGCAATTTCTCTCCACAAGAGGGCAGATAGTAAGTA
CAATCGATTGAAGAGAGAGACAAAAGAAAAAAAGAGGGAGAATGTTAGCT
TATATGGAGCCATAAAACCACACCTACGTGTCGGCGTACGCGAGACTTCT
CATAGTCTTCCGCTCTCATGGTTCTACTGTAGGTGACGAAGTCGGTCTTT
TCGTAGTGCAAACTATGTACTGCAGCACGAGACGAAATCCCTGATGCTGG
TTGCGGAGCAGTGCTAGCTGCGAGATTTTCAGGGATCTGTAGACTGATAC
TGTACGTTCTTGATGTGCGCCTCGCGACAGGTAGTGGGAGCCATCCTCGC
GGGGGGAGGAGACAACTCCAGTGTACCATCGTGCTCGGCATTGTCTACAG
CCCTGTTCGCTGCAACGTTGGCGTCACGTTACAACGACGCAGCGGCCGTG
ATCCGTCTTCTGGAAGTCTACGGGCGTGGGATAGCAGACGTGCACGACGA
CAACGGCCGGACACCCCTTCATCATGCCTGTCGCGGAGACGACGCTGGCT
TGGTCCGCCTTCTCCGGCGGGCTGGAGCCGATCCCGACGCTCACGACTGC
CAGGTAAAGCGAGTAGCCGGTACCAACCTGTGGAAGTTATACTTGAATCA
TGAAGCCGAAAACATGCCAAACCCTCATTTTTTACGTTAGAATCCATGTT
TTTCAGCTGGTGTTGCTAGCATTTGGTTCATGTATTCTAGCGGAGATTCT
AGAATATGGAGGTCTTGAGAGGGCAGTTCAACGGTACAGACAGAATCCCG
ACTCGGGTACTCAGGCTGGAGTTGAGAGCGCAAGGAGGCCCGACCAAACC
AAGCACACCGCCGTACATGAACGAACGTTGACGATAACTTGAAGTCGTCC
CCAAATAGCAACGGAATGGAAAACAACGAATCGCTTCCCGATACCCGCTA
TCTCGTCGCCCCGATACGTGTTCGCAGTCACAGTTTTCCCGTGGTCTGTT
GTGTCTTGCTGATGGTGTCTACAGGGGAACTCGCCTTTGGCAGTGGCCGC
TGCCACGGGGAGCCTGGCATGTCTGCAACTCTTGATTCAGGGAGGAAGCG
ACGTCAACAGCGCCAACGAAGCCGACGACACACCGCTACACCTTGCGGTG
GGTACATGTAACCATGGCTCTCGAAGCCCGTCCGCCGAACCCCTTCCACC
CGGGGAATGCTATCAATCATATGGCCTCGGGTCCGTCATTGGGTGTACCC
TGTTGTTGTCTTGAATATGTTTATCAAGGCTAACGACGCTACGCCGCCTT
TCCCACCAACACGCTTGATCTTGGTCCGATCCAGGTGCGGCACGGCAATA
TATTGTGTGTCAACGCACTAGTGGAGGGTGGTGCACAGCTCAGTCGGCGT
AACACCCTGGGCTTTACCCCCAGGGAAGATCTGCTCAACTCAGAACCCAT
GTTTGCTAGGGGCCGGTTGCCCAAGGTTCTTCGAGCAACGTTGGCCTACA
TTCAAGACGCCGAGGTTAGCTCATTCAAAGGAATACCGGAAATACACATG
CGATTCTTTCACTCTGAGCACCGTCTACGTGCTATGATCTTCTTTCGACG
AGGAAGAGAAACGACAAGCCCTTTGGGATCAACTTCTTTGCCTGCCTTGT
CCTTGTCGCTTCCTTGGTTTCGAGCATAAGCAATCACCGATGGATCATCT
TTGCCCGTCTTCTGCCCCCCGACCTGCTGTTGAATGGCAGGCATCAGCAC
CACAGCCCCAGTCTCCAACTTGGACAGCTCAGGATGGCTACGGATCTGAA
GGCACACCGGCCACAGTCGTTTCTTCTCGCCGAAGCCCCATCGGTGGTCC
CTCTCGCCACGCCTTCGACATTAACTTCAACTCCGGCCCCGAACCCCCTT
CCGAGGGAGAGGGACCGCTTCAGCAGATTGACACCGCCAGCGCTAGTGGG
AAAGAAACCGAGGCCTTGCATTACTACAGGCATCACGCGAAGGGGAGAGC
GCACGCAACCGCTACGGATTGGCTAGAGCGCAATCGGGATTGGGATCTTC
GGGAATTGCAAGGAAGCGGGAACGTTCTTGAGGGGCGGAATGAAGACAAG
ACTTTTTCCAACGGCAGCCGACGAGGGAATTGCAACAGGTTGGTACCGGT
CTCTGTGGTACTTGACTGGGCAACAGATCCTTTATTCGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2807325..2809967+

>mRNA_Ecto-sp6_S_contig9.18301.1 ID=mRNA_Ecto-sp6_S_contig9.18301.1|Name=mRNA_Ecto-sp6_S_contig9.18301.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2807325..2809967+ (Ectocarpus species6 EcLAC_371)
ATGAACCGGAAGCACAGCAGGCGGTCACGACGCCGACGCGAATGCGATCG
ACGAGACCGAACTCTCCGCTGGCCGGAGGCCCTACTCGCGCGCGAGTACG
ACGAGGTAGTGGGAGCCATCCTCGCGGGGGGAGGAGACAACTCCAGTGTA
CCATCGTGCTCGGCATTGTCTACAGCCCTGTTCGCTGCAACGTTGGCGTC
ACGTTACAACGACGCAGCGGCCGTGATCCGTCTTCTGGAAGTCTACGGGC
GTGGGATAGCAGACGTGCACGACGACAACGGCCGGACACCCCTTCATCAT
GCCTGTCGCGGAGACGACGCTGGCTTGGTCCGCCTTCTCCGGCGGGCTGG
AGCCGATCCCGACGCTCACGACTGCCAGGGGAACTCGCCTTTGGCAGTGG
CCGCTGCCACGGGGAGCCTGGCATGTCTGCAACTCTTGATTCAGGGAGGA
AGCGACGTCAACAGCGCCAACGAAGCCGACGACACACCGCTACACCTTGC
GGTGCGGCACGGCAATATATTGTGTGTCAACGCACTAGTGGAGGGTGGTG
CACAGCTCAGTCGGCGTAACACCCTGGGCTTTACCCCCAGGGAAGATCTG
CTCAACTCAGAACCCATGTTTGCTAGGGGCCGGTTGCCCAAGGTTCTTCG
AGCAACGTTGGCCTACATTCAAGACGCCGAGGCATCAGCACCACAGCCCC
AGTCTCCAACTTGGACAGCTCAGGATGGCTACGGATCTGAAGGCACACCG
GCCACAGTCGTTTCTTCTCGCCGAAGCCCCATCGGTGGTCCCTCTCGCCA
CGCCTTCGACATTAACTTCAACTCCGGCCCCGAACCCCCTTCCGAGGGAG
AGGGACCGCTTCAGCAGATTGACACCGCCAGCGCTAGTGGGAAAGAAACC
GAGGCCTTGCATTACTACAGGCATCACGCGAAGGGGAGAGCGCACGCAAC
CGCTACGGATTGGCTAGAGCGCAATCGGGATTGGGATCTTCGGGAATTGC
AAGGAAGCGGGAACGTTCTTGAGGGGCGGAATGAAGACAAGACTTTTTCC
AACGGCAGCCGACGAGGGAATTGCAACAGGTTGGTACCGGTCTCTGTGGT
ACTTGACTGGGCAACAGATCCTTTATTCGGGTAG
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