mRNA_Ecto-sp6_S_contig9.18298.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI) HSP 1 Score: 719 bits (1855), Expect = 2.380e-250 Identity = 443/511 (86.69%), Postives = 457/511 (89.43%), Query Frame = 1
Query: 1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDPESRSIDQSSSSNSWDSKDYIIIGLSAALALCIILSIGFLVARAYKKHRAPSETQPPPTTGTPAXXXXXXXXXXXXTTGTAEPVES 1533
MEL+RKSAGLALFFLGLAARQASAVTTC AL TAVEAISGTGT ELEG FTCDTHI VAASQDVTISGAYTITLG LFAGST TDAGGSLF NEGTLKLDGITFA+ XXXXXXXXXXXXELYPTGAFLSRGGV+YSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDA+GAGGDVY GTNVELTVTGTTFSTS AEYGGAAIECCGAVI + F ALLVNRPDQD CPR+LDLS+STFSGCTV STTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLM+YVQFNLNT PAEAY TDTEQGAAIVVTNTGVADGETTVTMG F+D+YCFANEPYECEFVYDQSDIVH+GEFKCQICDI+G +Q SGTD DL SIDQSSSSNSWDSKDYIIIGLSAALALCIIL+IGFLVARAYKKHRAPSETQPPPTTG XXXXXXXXXXXXTTGTAEPVES
Sbjct: 1 MELSRKSAGLALFFLGLAARQASAVTTCPALITAVEAISGTGTAELEGSFTCDTHITVAASQDVTISGAYTITLGPLFAGSTDTDAGGSLFMNEGTLKLDGITFATXXXXXXXXXXXXXXXXXXXXXXELYPTGAFLSRGGVVYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDADGAGGDVYVGTNVELTVTGTTFSTSVAEYGGAAIECCGAVISNCTFXXXXXXXXXXXXXXALLVNRPDQDPCPRDLDLSDSTFSGCTVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMNYVQFNLNTLPAEAYVTDTEQGAAIVVTNTGVADGETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLT----GSIDQSSSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYKKHRAPSETQPPPTTGXXXXXXXXXXXXXXXTTGTAEPVES 507
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI) HSP 1 Score: 674 bits (1740), Expect = 2.390e-233 Identity = 405/460 (88.04%), Postives = 416/460 (90.43%), Query Frame = 1
Query: 1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDPESRSIDQSSSSNSWDSKDYIIIGLSAALALCIIL 1380
M TRKSA LALFFLGLAARQASAVTTCLAL TAVEAISGTGTVELEGGFTC+ +I VAASQDVTISGAYTITLG FAGST TDAGGSLFENEGTLKLDGITFA+ETTDG XXXXXXXXXXXXELYPTG FLSRGGVIYSDSAGTISISDSTF SNLASEXXXXXXXXXXXXXXXXXXXX NEVGTGV A+GAGGDVYAGTNV+LTVTGTTFSTSAAEYGGAAIECCGAVI DTVFTGADT ALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMG FNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLID RSID SSS++ I+IGLS AL L +++
Sbjct: 1 MGFTRKSAVLALFFLGLAARQASAVTTCLALITAVEAISGTGTVELEGGFTCEAYITVAASQDVTISGAYTITLGAPFAGSTNTDAGGSLFENEGTLKLDGITFATETTDGXXXXXXXXXXXXXXXXXELYPTGIFLSRGGVIYSDSAGTISISDSTFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVAADGAGGDVYAGTNVDLTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTXXXXXXXXXALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQG----IVIGLSLALGLTLVV 456
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI) HSP 1 Score: 514 bits (1323), Expect = 4.720e-171 Identity = 303/438 (69.18%), Postives = 326/438 (74.43%), Query Frame = 1
Query: 121 TGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGA--FLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQ-SGTDDDLIDPESRS--------------------IDQSSSSNSWDSKDYIIIGLSAALA 1365
TGTVELE GFTCD HI V ASQDVTISGAYTITLG LFAGSTATDAGGSLF NEGTL+LDGITFA+E TDGNRAVW XXXXXXXXXXEL+P+G FL+RGGVIYSDS G I+IS STF SN+ASE NEVGTGV+ GAGGDVYAG NVELTVTGTTFSTSAAEY LLVNRPDQD C RELDLS++ FSGC+V STTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNT PAEAYATDTEQGAAIVVTNTGV +G TTV MG FNDMYCF N+PYECEFVYDQSDIVHSGEF CQ+C I+G RQ+ SGTDDD ++ ++ IDQSSSS SW+SKDY+IIGLSAA+A
Sbjct: 4 TGTVELESGFTCDAHITVDASQDVTISGAYTITLGALFAGSTATDAGGSLFVNEGTLELDGITFATEATDGNRAVWNGXXXXXXXXXXELFPSGGGEFLARGGVIYSDSDGEIAISASTFKSNIASERGGAVYAIGSETLTITDSLFTVNEVGTGVEEGGAGGDVYAGINVELTVTGTTFSTSAAEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVNRPDQDACSRELDLSDTIFSGCSVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTLPAEAYATDTEQGAAIVVTNTGVEEGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVEGIGQTSSSTSVQEGXXXXXXXXTGKIDQSSSSGSWESKDYVIIGLSAAVA 441
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5L8Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q9_9PHAE) HSP 1 Score: 322 bits (825), Expect = 9.540e-100 Identity = 206/272 (75.74%), Postives = 217/272 (79.78%), Query Frame = 1
Query: 1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPREL 816
M T K+AGLAL FLGLAARQASAVT+CL L TAVEAIS TGT+ELEGGF CDT I V A QDVTISGAYTIT+G FAGST D GSLF NEG LKLDGITF +ETT+GNRAVW ELYPTGAFL+RGGVIYSDSA I+IS+S F SNLASEXXXXXXXXXXXXXXXXXXXX NEVGTGVDA+GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVI DTVFTGADTASDG R +D CP L
Sbjct: 1 MGFTSKTAGLALLFLGLAARQASAVTSCLDLITAVEAISDTGTIELEGGFNCDTFITVTAGQDVTISGAYTITIGAGFAGST--DEDGSLFVNEGILKLDGITFVTETTNGNRAVWNAGELSVEGCTFELYPTGAFLARGGVIYSDSAEAIAISNSIFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 270
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5K6C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C2_9PHAE) HSP 1 Score: 191 bits (485), Expect = 5.310e-53 Identity = 107/144 (74.31%), Postives = 113/144 (78.47%), Query Frame = 1
Query: 1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIY 432
M LTRKSAGLAL FLGLAARQASAVT+CL L TAV+AI TGT+ELEGGFTCD I V A QDVTISGAYTIT+G FAGST D GSLF NEG LKLDGITFA+ETTDGNRAVW ELYPTGAFLSRGGVI+
Sbjct: 1 MVLTRKSAGLALLFLGLAARQASAVTSCLDLITAVDAIFDTGTIELEGGFTCDIFITVTAGQDVTISGAYTITIGAGFAGSTGAD--GSLFVNEGGLKLDGITFATETTDGNRAVWNVGTLSVEGCTFELYPTGAFLSRGGVIF 142
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5L0R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R7_9PHAE) HSP 1 Score: 152 bits (383), Expect = 4.430e-39 Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 427 IYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPREL 816
IYSDSAG I+IS+S F SNLASE RGNEVGTGVDA+GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVI DTVFTGADTASDG R +D CP L
Sbjct: 14 IYSDSAGIITISNSIFKSNLASERGGAVYAIGSETLTITDSLFRGNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 143
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 5.470e-17 Identity = 119/444 (26.80%), Postives = 180/444 (40.54%), Query Frame = 1
Query: 103 VEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGT-LKLDGITFASET----TDGN-RAVWXXXXXXXXXXXXELYPTGAFLSRGGVIY-----SDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNE-VGTGVDAN-GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTA-----------SDGAHYGGALLVNRPDQDG---CPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETT---------------------------------------VTMGVFNDMYCFANEPYECEFVYDQSD----IVHSGEFKCQIC 1224
V+AI+ VE+ G D + VA ++D + + +L L EG+ L LD +TFA+E + G RAVW E + GG+ S S+ +S+ +STF N+A GNE VG G GAGG VYA V +TV ++F + YGGAA+ CGA IY++ F + SD L + Q G CP L +S + F + +TG GG++A D+S ++ + + SS+G + F +S DSG QL ++ +QFN N A ++ G+A+++ TG TT +GV D+YCF N+PY+CE + SD + +G +C +C
Sbjct: 74 VDAITLPTGVEVSIGSAPDENFLVAVAEDFLVPDPTSASL---------------LVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLQVDGCVFESLSFSSQQDGGGIYSTAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLSRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCP-PLFVSGTMFESNSA--STGYGGAIASVDSSLSVFNSSVLSSLGGGIYFGTSDDSGRDQLELELLQFNWNGGSA---SSPDLVGSALLLERTGTPASNTTGPLEQLDPSTSSAXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVATDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNVC 496
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 6.680e-16 Identity = 117/446 (26.23%), Postives = 178/446 (39.91%), Query Frame = 1
Query: 103 VEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGT-LKLDGITFASET----TDGN-RAVWXXXXXXXXXXXXELYPTGAFLSRGGVIY-----SDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNE-VGTGVDAN-GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTA-----------SDGAHYGGALLVNRPDQDG---CPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETT-----------------------------------------VTMGVFNDMYCFANEPYECEFVYDQSD----IVHSGEFKCQIC 1224
V+AI+ VE+ G D + VA ++D + + +L L EG+ L LD +TFA+E + G RAVW E + GG+ S S+ +S+ +STF N+A GNE VG G GAGG VYA V +TV ++F YGGAA+ CGA IY++ F + SD L + Q G CP L +S + F + +TG GG++A D+S ++ + + S++G + F +S DSG QL ++ +QFN N + ++ G+A+++ TG TT +GV D+YCF N+PY+CE + SD + +G +C C
Sbjct: 95 VDAITLPAGVEVSIGSAPDENFLVAVAEDFLVPDPTSASL---------------LVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLDVDGCVFESLSFSSQQDGGGIYSMAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLGRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCP-PLFVSGTMFESNSA--STGYGGAIASVDSSLSVFNSSVLSTLGGGIYFGTSDDSGRDQLELELLQFNWN---GGSSSSPDLVGSALLLERTGTPASNTTGPLEQVDPSTSSXXXXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVARDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNAC 519 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18298.1 >prot_Ecto-sp6_S_contig9.18298.1 ID=prot_Ecto-sp6_S_contig9.18298.1|Name=mRNA_Ecto-sp6_S_contig9.18298.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=512bp MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFback to top mRNA from alignment at Ecto-sp6_S_contig9:2780798..2786537+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18298.1 ID=mRNA_Ecto-sp6_S_contig9.18298.1|Name=mRNA_Ecto-sp6_S_contig9.18298.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5740bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2780798..2786537+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2780798..2786537+ >mRNA_Ecto-sp6_S_contig9.18298.1 ID=mRNA_Ecto-sp6_S_contig9.18298.1|Name=mRNA_Ecto-sp6_S_contig9.18298.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2780798..2786537+ (Ectocarpus species6 EcLAC_371)back to top |