mRNA_Ecto-sp6_S_contig9.18298.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18298.1
Unique NamemRNA_Ecto-sp6_S_contig9.18298.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 719 bits (1855), Expect = 2.380e-250
Identity = 443/511 (86.69%), Postives = 457/511 (89.43%), Query Frame = 1
Query:    1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDPESRSIDQSSSSNSWDSKDYIIIGLSAALALCIILSIGFLVARAYKKHRAPSETQPPPTTGTPAXXXXXXXXXXXXTTGTAEPVES 1533
            MEL+RKSAGLALFFLGLAARQASAVTTC AL TAVEAISGTGT ELEG FTCDTHI VAASQDVTISGAYTITLG LFAGST TDAGGSLF NEGTLKLDGITFA+          XXXXXXXXXXXXELYPTGAFLSRGGV+YSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDA+GAGGDVY GTNVELTVTGTTFSTS AEYGGAAIECCGAVI +  F              ALLVNRPDQD CPR+LDLS+STFSGCTV STTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLM+YVQFNLNT PAEAY TDTEQGAAIVVTNTGVADGETTVTMG F+D+YCFANEPYECEFVYDQSDIVH+GEFKCQICDI+G +Q SGTD DL      SIDQSSSSNSWDSKDYIIIGLSAALALCIIL+IGFLVARAYKKHRAPSETQPPPTTG   XXXXXXXXXXXXTTGTAEPVES
Sbjct:    1 MELSRKSAGLALFFLGLAARQASAVTTCPALITAVEAISGTGTAELEGSFTCDTHITVAASQDVTISGAYTITLGPLFAGSTDTDAGGSLFMNEGTLKLDGITFATXXXXXXXXXXXXXXXXXXXXXXELYPTGAFLSRGGVVYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDADGAGGDVYVGTNVELTVTGTTFSTSVAEYGGAAIECCGAVISNCTFXXXXXXXXXXXXXXALLVNRPDQDPCPRDLDLSDSTFSGCTVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMNYVQFNLNTLPAEAYVTDTEQGAAIVVTNTGVADGETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLT----GSIDQSSSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYKKHRAPSETQPPPTTGXXXXXXXXXXXXXXXTTGTAEPVES 507          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 674 bits (1740), Expect = 2.390e-233
Identity = 405/460 (88.04%), Postives = 416/460 (90.43%), Query Frame = 1
Query:    1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDPESRSIDQSSSSNSWDSKDYIIIGLSAALALCIIL 1380
            M  TRKSA LALFFLGLAARQASAVTTCLAL TAVEAISGTGTVELEGGFTC+ +I VAASQDVTISGAYTITLG  FAGST TDAGGSLFENEGTLKLDGITFA+ETTDG     XXXXXXXXXXXXELYPTG FLSRGGVIYSDSAGTISISDSTF SNLASEXXXXXXXXXXXXXXXXXXXX  NEVGTGV A+GAGGDVYAGTNV+LTVTGTTFSTSAAEYGGAAIECCGAVI DTVFTGADT         ALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMG FNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLID   RSID  SSS++      I+IGLS AL L +++
Sbjct:    1 MGFTRKSAVLALFFLGLAARQASAVTTCLALITAVEAISGTGTVELEGGFTCEAYITVAASQDVTISGAYTITLGAPFAGSTNTDAGGSLFENEGTLKLDGITFATETTDGXXXXXXXXXXXXXXXXXELYPTGIFLSRGGVIYSDSAGTISISDSTFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVAADGAGGDVYAGTNVDLTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTXXXXXXXXXALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQG----IVIGLSLALGLTLVV 456          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI)

HSP 1 Score: 514 bits (1323), Expect = 4.720e-171
Identity = 303/438 (69.18%), Postives = 326/438 (74.43%), Query Frame = 1
Query:  121 TGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGA--FLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQ-SGTDDDLIDPESRS--------------------IDQSSSSNSWDSKDYIIIGLSAALA 1365
            TGTVELE GFTCD HI V ASQDVTISGAYTITLG LFAGSTATDAGGSLF NEGTL+LDGITFA+E TDGNRAVW  XXXXXXXXXXEL+P+G   FL+RGGVIYSDS G I+IS STF SN+ASE                      NEVGTGV+  GAGGDVYAG NVELTVTGTTFSTSAAEY                                LLVNRPDQD C RELDLS++ FSGC+V STTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNT PAEAYATDTEQGAAIVVTNTGV +G TTV MG FNDMYCF N+PYECEFVYDQSDIVHSGEF CQ+C I+G RQ+ SGTDDD ++   ++                    IDQSSSS SW+SKDY+IIGLSAA+A
Sbjct:    4 TGTVELESGFTCDAHITVDASQDVTISGAYTITLGALFAGSTATDAGGSLFVNEGTLELDGITFATEATDGNRAVWNGXXXXXXXXXXELFPSGGGEFLARGGVIYSDSDGEIAISASTFKSNIASERGGAVYAIGSETLTITDSLFTVNEVGTGVEEGGAGGDVYAGINVELTVTGTTFSTSAAEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVNRPDQDACSRELDLSDTIFSGCSVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTLPAEAYATDTEQGAAIVVTNTGVEEGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVEGIGQTSSSTSVQEGXXXXXXXXTGKIDQSSSSGSWESKDYVIIGLSAAVA 441          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5L8Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q9_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 9.540e-100
Identity = 206/272 (75.74%), Postives = 217/272 (79.78%), Query Frame = 1
Query:    1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPREL 816
            M  T K+AGLAL FLGLAARQASAVT+CL L TAVEAIS TGT+ELEGGF CDT I V A QDVTISGAYTIT+G  FAGST  D  GSLF NEG LKLDGITF +ETT+GNRAVW            ELYPTGAFL+RGGVIYSDSA  I+IS+S F SNLASEXXXXXXXXXXXXXXXXXXXX  NEVGTGVDA+GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVI DTVFTGADTASDG          R  +D CP  L
Sbjct:    1 MGFTSKTAGLALLFLGLAARQASAVTSCLDLITAVEAISDTGTIELEGGFNCDTFITVTAGQDVTISGAYTITIGAGFAGST--DEDGSLFVNEGILKLDGITFVTETTNGNRAVWNAGELSVEGCTFELYPTGAFLARGGVIYSDSAEAIAISNSIFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 270          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5K6C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 5.310e-53
Identity = 107/144 (74.31%), Postives = 113/144 (78.47%), Query Frame = 1
Query:    1 MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLDGITFASETTDGNRAVWXXXXXXXXXXXXELYPTGAFLSRGGVIY 432
            M LTRKSAGLAL FLGLAARQASAVT+CL L TAV+AI  TGT+ELEGGFTCD  I V A QDVTISGAYTIT+G  FAGST  D  GSLF NEG LKLDGITFA+ETTDGNRAVW            ELYPTGAFLSRGGVI+
Sbjct:    1 MVLTRKSAGLALLFLGLAARQASAVTSCLDLITAVDAIFDTGTIELEGGFTCDIFITVTAGQDVTISGAYTITIGAGFAGSTGAD--GSLFVNEGGLKLDGITFATETTDGNRAVWNVGTLSVEGCTFELYPTGAFLSRGGVIF 142          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5L0R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 4.430e-39
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1
Query:  427 IYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDANGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASDGAHYGGALLVNRPDQDGCPREL 816
            IYSDSAG I+IS+S F SNLASE                    RGNEVGTGVDA+GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVI DTVFTGADTASDG          R  +D CP  L
Sbjct:   14 IYSDSAGIITISNSIFKSNLASERGGAVYAIGSETLTITDSLFRGNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 143          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.470e-17
Identity = 119/444 (26.80%), Postives = 180/444 (40.54%), Query Frame = 1
Query:  103 VEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGT-LKLDGITFASET----TDGN-RAVWXXXXXXXXXXXXELYPTGAFLSRGGVIY-----SDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNE-VGTGVDAN-GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTA-----------SDGAHYGGALLVNRPDQDG---CPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETT---------------------------------------VTMGVFNDMYCFANEPYECEFVYDQSD----IVHSGEFKCQIC 1224
            V+AI+    VE+  G   D +  VA ++D  +    + +L               L   EG+ L LD +TFA+E     + G  RAVW            E     +    GG+       S S+  +S+ +STF  N+A                       GNE VG G     GAGG VYA   V +TV  ++F    + YGGAA+  CGA IY++ F   +             SD       L +    Q G   CP  L +S + F   +   +TG GG++A  D+S ++ + +  SS+G  + F +S DSG  QL ++ +QFN N   A   ++    G+A+++  TG     TT                                         +GV  D+YCF N+PY+CE  +  SD    +  +G  +C +C
Sbjct:   74 VDAITLPTGVEVSIGSAPDENFLVAVAEDFLVPDPTSASL---------------LVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLQVDGCVFESLSFSSQQDGGGIYSTAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLSRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCP-PLFVSGTMFESNSA--STGYGGAIASVDSSLSVFNSSVLSSLGGGIYFGTSDDSGRDQLELELLQFNWNGGSA---SSPDLVGSALLLERTGTPASNTTGPLEQLDPSTSSAXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVATDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNVC 496          
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.680e-16
Identity = 117/446 (26.23%), Postives = 178/446 (39.91%), Query Frame = 1
Query:  103 VEAISGTGTVELEGGFTCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGT-LKLDGITFASET----TDGN-RAVWXXXXXXXXXXXXELYPTGAFLSRGGVIY-----SDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNE-VGTGVDAN-GAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTA-----------SDGAHYGGALLVNRPDQDG---CPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETT-----------------------------------------VTMGVFNDMYCFANEPYECEFVYDQSD----IVHSGEFKCQIC 1224
            V+AI+    VE+  G   D +  VA ++D  +    + +L               L   EG+ L LD +TFA+E     + G  RAVW            E     +    GG+       S S+  +S+ +STF  N+A                       GNE VG G     GAGG VYA   V +TV  ++F      YGGAA+  CGA IY++ F   +             SD       L +    Q G   CP  L +S + F   +   +TG GG++A  D+S ++ + +  S++G  + F +S DSG  QL ++ +QFN N     + ++    G+A+++  TG     TT                                           +GV  D+YCF N+PY+CE  +  SD    +  +G  +C  C
Sbjct:   95 VDAITLPAGVEVSIGSAPDENFLVAVAEDFLVPDPTSASL---------------LVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLDVDGCVFESLSFSSQQDGGGIYSMAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLGRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCP-PLFVSGTMFESNSA--STGYGGAIASVDSSLSVFNSSVLSTLGGGIYFGTSDDSGRDQLELELLQFNWN---GGSSSSPDLVGSALLLERTGTPASNTTGPLEQVDPSTSSXXXXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVARDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNAC 519          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FV99_ECTSI2.380e-25086.69Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FVA4_ECTSI2.390e-23388.04Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FVA0_ECTSI4.720e-17169.18Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5L8Q9_9PHAE9.540e-10075.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6C2_9PHAE5.310e-5374.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0R7_9PHAE4.430e-3966.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAJ9_9PHAE5.470e-1726.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G311_ECTSI6.680e-1626.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2780798..2786537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2779
Hectar predicted targeting categorysignal peptide
Exons6
Cds size1536
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18298.1prot_Ecto-sp6_S_contig9.18298.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2780798..2785294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350548.4329765-CDS-Ecto-sp6_S_contig9:2780797..27812231682350548.4329765-CDS-Ecto-sp6_S_contig9:2780797..2781223Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2780798..2781223 +
1682350548.443726-CDS-Ecto-sp6_S_contig9:2783057..27833841682350548.443726-CDS-Ecto-sp6_S_contig9:2783057..2783384Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2783058..2783384 +
1682350548.453735-CDS-Ecto-sp6_S_contig9:2783777..27840141682350548.453735-CDS-Ecto-sp6_S_contig9:2783777..2784014Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2783778..2784014 +
1682350548.4640307-CDS-Ecto-sp6_S_contig9:2784152..27842571682350548.4640307-CDS-Ecto-sp6_S_contig9:2784152..2784257Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2784153..2784257 +
1682350548.4739451-CDS-Ecto-sp6_S_contig9:2784631..27848101682350548.4739451-CDS-Ecto-sp6_S_contig9:2784631..2784810Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2784632..2784810 +
1682350548.483874-CDS-Ecto-sp6_S_contig9:2785032..27852941682350548.483874-CDS-Ecto-sp6_S_contig9:2785032..2785294Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2785033..2785294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350548.4933858-UTR-Ecto-sp6_S_contig9:2785294..27865371682350548.4933858-UTR-Ecto-sp6_S_contig9:2785294..2786537Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2785295..2786537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18298.1

>prot_Ecto-sp6_S_contig9.18298.1 ID=prot_Ecto-sp6_S_contig9.18298.1|Name=mRNA_Ecto-sp6_S_contig9.18298.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=512bp
MELTRKSAGLALFFLGLAARQASAVTTCLALFTAVEAISGTGTVELEGGF
TCDTHIKVAASQDVTISGAYTITLGVLFAGSTATDAGGSLFENEGTLKLD
GITFASETTDGNRAVWNTGTLSLEGCTFELYPTGAFLSRGGVIYSDSAGT
ISISDSTFTSNLASERGGAVYAIGSETIAITDSLFRGNEVGTGVDANGAG
GDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVIYDTVFTGADTASD
GAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTS
ATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDT
EQGAAIVVTNTGVADGETTVTMGVFNDMYCFANEPYECEFVYDQSDIVHS
GEFKCQICDIEGERQQSGTDDDLIDPESRSIDQSSSSNSWDSKDYIIIGL
SAALALCIILSIGFLVARAYKKHRAPSETQPPPTTGTPAPPAPPAPAAPP
ATTGTAEPVES*
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mRNA from alignment at Ecto-sp6_S_contig9:2780798..2786537+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18298.1 ID=mRNA_Ecto-sp6_S_contig9.18298.1|Name=mRNA_Ecto-sp6_S_contig9.18298.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5740bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2780798..2786537+ (Ectocarpus species6 EcLAC_371)
ATGGAGCTCACCCGTAAGAGCGCGGGCCTCGCCCTCTTCTTCCTCGGGCT TGCCGCTAGGCAAGCCTCGGCTGTCACCACCTGCCTCGCCCTCTTCACCG CGGTTGAGGCCATCTCCGGCACAGGGACGGTAGAGCTCGAGGGCGGCTTT ACGTGCGACACACACATCAAGGTCGCTGCCAGCCAGGATGTCACCATCAG CGGCGCCTACACGATCACCCTGGGCGTACTCTTCGCCGGCAGCACGGCCA CGGACGCGGGGGGCAGCCTGTTCGAGAACGAGGGCACGCTGAAGCTCGAC GGCATCACGTTCGCCTCGGAAACAACGGATGGGAACCGCGCTGTCTGGAA CACGGGAACGCTTTCGCTGGAAGGCTGCACGTTCGAACTTTACCCGACCG GAGCATTTCTCTCGAGGGGCGGTGTGGTAAGTGGCATCACACACGCCAGC AGCAGATATCCTCGTCCTGCCTTTTCCTTGGCGTCCCCTCTTGCGCAATA GCTTTGCCGTATGTCCGGAGATTGCACACGATACCACACCTACAGTTCAG CAGTACAGCAGTACCTCTGGACTGAACCGATTTCAAAGCTGCAGCTAATA CACGGCGGTGTCTGCTGTGCTGCAAAAGGCGGCGAAGGAATGGTCCCGTC CATAGCATTCCAACAACGTATGATTTTCTTTTGACATCCTCTTCGTCTGG AGTACTCGAGCCGGTCCCGCGGATGTGGTATCTGAGGCAACCTTCGGTAC CCTATTACCCCATGGCTTGCCCTGCGTCGTGTCATCTCCAGAGATCAGCA TGTTGCTTCGAGTCAAAATGCAGACGATCTTGGTACCCAGGAGTAACGGG AGTTTGAAAAATATCCAGCAGTTTGATCGACAGAAACTGCGCTGCCGTCT TCCCAGTGAAAGGGCAATCGCATGTAGTTTGTTCTGGAGCACACACCACA CGTGAAACAGAGGTGTCCCCTATCTGTATTTTTTCCACCGCAGTCTTGCA CGGGAGTTAATCCTTGAAGTGTGTACATAGACTACCATGAGAATATTGTA CCGTACACAAACGAATCCATATCCATCTACTCTGCGCTGTATCCACGACT AGACTAGTCTAATAATCCAGCATTTCGTTGCTTGCATATTCTCAATAGTC CACCAATATTATTTGGAGTTGGTCTGCATTGAACGTGTGCATACGGAACG ACACACAAACCTTCAAGTCTCACGTGGCGGGCATGGTTCACTATTATTAC TGTTCTTCCTCAATATTTTACGAACAAGAATCGACGCATCCCAGCCATTT CGGCACCTATCAACACAGCACTAGCCCTTCAGAGTGGTGCCTCAGTTGAT GCTACAGTACTGTACAGTAGTTCGTATTCTTTTACAAATTTTGTTAAATC TTCGACTTGGTTCGACTGTTATCGTCTAAAACGCTCCTCCTCATCATGTT GTAGTGCAAGTTTGACACACTTGGAAGATAAACACACACCAACTTCGGCC TCTTCCACGCGAAGCTCTCCAGAACAGATACTTTGGGGTACAACACGTAG TGTTATAGAGTTCACCTGTCGTTTCCCTCGTGGTGTGATGTAGTCTACAG GACTCGCGGATGAATGTCCCTTAGACGTCAATGAGTTACACGTGTACCAC CTACGAACAACGCACACAGAACGTTAGGCTCAAAACGTCACGTTGCAGCA GGCGTCTGTTCGCGATTGGCGGTACCCGCTAAGGATCACGACTGGTGTTC GGCCGGAAATGTTGTGGCTCCTGTGGACGACGAGGAAACCACGTAGTGGA TGTTGTCGTGGTTATCCTGCCACTGGGTTTGTCTACGCTGGCTGTTTTCT TTCTACATAGGACAAGCCTCAGCTTAACTACACAGATTATGCCATTTTCT GCCCCACCACTTCCACCGGCGATCAATTCTGGATATTCATACTCGCGGCC TCTCTGTCCGATGGCACTACAGATTCTACCAAAAATCGCCGCACAGTCGC TTCGACCGCCGTTGCATACAACAATACTCAAGCTGAAGGACCGCCATCGC CAACTCTAATCCCTCGGGTATGCTAGTCTTTTCTTGTCTTTTAGGGGAGA GTCCAGGAACATGGGGGCCACATCAAACACACGAGATCGAGCACTCATCC CTACGTGCTGGTTTCTCGTGTGGAACAACAACACGCGATCACAGTGTCGT AATGCTGTGCTGAACATGCACGTCTCTCTTTCTATTCTAAATGTGCCGCC GCTGTGCCAGATCTACTCCGACTCTGCAGGAACGATTTCCATCTCAGACT CCACCTTCACATCAAACCTCGCGAGCGAGAGGGGCGGTGCAGTGTACGCC ATTGGCTCCGAAACCATCGCCATCACGGACTCCCTTTTCAGGGGCAACGA AGTTGGGACGGGCGTTGACGCGAACGGCGCAGGAGGCGACGTTTACGCAG GCACCAATGTTGAGCTCACGGTCACTGGAACTACGTTCTCGACGTCTGCG GCCGAGTACGGTGGAGCTGCCATCGAGTGCTGCGGCGCGGTAATCTACGA CACTGTCTTCACGGGAGCGGACACTGCCAGCGACGGCGTGAGTCGACGTA GGGGTTCAAGAGAGAAACGAACACAAGAAACTGCTGTCCCAGTCATCTGC TGTTCATTTAATCTACCTCGGTTTTAGGCAGGGAGAGAAACTCCTTTGCC GCTGGCATATATTAACGGAAACGCTCCTGTTTCCACCGCTTGACTTGACA CGCCTGCTGCACAACCAAGCCAGGACTCACGTAGTGTCTCGAAGAGGGCA TGTTGGCTTATCTGTTTTCCGCATGCCCTGCATGCCTTCCACCGCCGTCC AAATAGTTGCACAGTAGCATGGTCCTTTCACGATGACTTAGGGTTCGCTG CTGTATCTGTTCACACCGAGCACCATTATGATTCGCTTCTATTTTACCCA TCTCCCCGACGACAAATGCAACATTCTCAGGCGCACTACGGCGGGGCGCT GCTGGTCAACCGCCCTGACCAAGACGGATGCCCTAGGGAGCTTGACCTCT CAAACTCGACGTTCAGCGGATGCACCGTAGGAAGCACTACAGGAGCGGGC GGTTCCGTGGCTATCTTCGATACTTCGGCAACAATTACCGACTGCACTTT TGAGAGCAGCGTTGGCACGGCGGTGCTGTTCTCGTCTTCCAGCGATTCCG GAGAACACCAGCTTCTCGTGAGTGACGCGCGTTGTCGTCTAGTAGTGCTT TTTTGTCGACGATTCCACTTGTGTGAGGATGTTGACATGTGCCGCATCTT GACCAATCACTGCTGTCCGCTGCTTCCCGAACGCCTCCTTTTGTCTGCGT TTCAGATGGACTACGTCCAGTTCAACCTCAACACCTTCCCTGCTGAGGCG TACGCCACCGACACTGAGCAGGGAGCTGCGATCGTCGTGACGAACACGGG CGTGGCGGATGTGAGTTTGTTTCGCTTGGTCTCGATGGCTTCGGAAATGG GTTTGCTTCCGATGTGTTGCAAGTGTTCTTGAGCTGGAGGCAAAACTCTC AGATTTTGGTAAGGACTATTCGATGTAATACTTTTGTTCGCCTCATGGGG GTGACACCTCTGCCATTTCTTTTCCCTTCGGAAGGTGCTGCGTTGGGTGT TGGACATTCCtgtagtaGTCGTGCAGGGAATATTTGAGACCGCCTTGGGC GAGGCGGAAGGAACCGGCGGTCGCTGGGGGGCCATGAGCGACCAACACTG TACTCCCCATATCGATCAAACATCGAAAGTTCTGCCTAGGTTTTATATCA TCCTATTTCATACTTTTCATTCCATTCGTGCCAGGGAGAGACGACGGTGA CCATGGGCGTATTCAACGACATGTACTGCTTCGCCAATGAGCCTTACGAG TGCGAGTTTGTGTACGATCAGTCGGACATCGTCCACAGCGGGGAGTTTAA GTGCCAAATCTGCGACATCGAAGGGGAGCGACAACAAAGTGGCACCGACG ACGACTTGATCGAGTGAGTTCAGTGATGTGTATTGGCCGCCCCCTGTTGA AGAATACAAGAATACTAGCCCTATGTCCCTCCTTCTGTAGATGCTTTCTT CTTGAAGAATGATGTGCGGCGTCCTTCGTTTCACTTGGCCCTAGCCCTAA CCGTGGGCACACACCCACGTTGTTCACTTGTACGTAAAGCTAACTCCAAC CCGATTTCGACTTTTTCGCGCACTTTTCGTTGCAGCCCAGAGAGCAGAAG CATCGACCAGAGTTCGAGCTCCAACTCGTGGGACTCCAAGGACTACATTA TCATTGGCCTGTCGGCAGCTTTGGCATTGTGCATCATCCTCTCAATCGGC TTTCTGGTAGCACGGGCGTACAAAAAACACAGGGCGCCCAGTGAAACACA GCCCCCTCCCACAACAGGCACTCCCGCTCCACCTGCCCCACCCGCACCGG CAGCCCCACCAGCCACAACAGGCACTGCTGAGCCTGTCGAATCGTAAGCC GTGGACGTGTCGAGCTTCCAGCACCATTAGCAGTTTGCGAAGTCTCCGGA AGCGGGAACAAAAAACAAGGGCGAGTAGACCGCTACGTCATGATAGCGGT AAGGCGATATGCCATTCTTTGAAATGTGATGCGTGTACAGCGTGTGACGA CGCAAAACCGCCACAGAAGGCCGAAAGTTGGAGGCCTCATGCGAGTATTG CTCTAACTTGATGGCTTGCGATATGCTCGCCAAGGTATTGAGCAACGATT GCAACAGAGTTTGTCGTAGAAGTTTCAAAATGTTTTCCACCCCCTACCGG AATGGTCATAGGAGAGTCTATTCTGAGAGGCTCAAATACCCCCTAGAGCA ATACGCATGCCGCTAGAAGTTGTGTTTCAGGTACAGTTTCACAGAACACA CAAATGTTTTTCAAGGCGAGCAAACCGCGCCAGATGGCGAGACTGTAGGG GGGTGTCCTTGCCTGTCCAGTTCGAGGCCAGCTCATTTTTAAACGCGATC AAGTGTCATCAACGAGGACACGGGGCACGCAAACCAGTCTATCACCATTT TTGAGGAGAAGACGGCTAAAAAAATATTTGTTCTGGACGGCGCCCAACGT TTGCTTTCATTGGGGGAATTCACGTCCGATGGAATTTCAGTAAATGAACT GGTCCGGCCTGATTGGATTCGCACTGTGCGTTCGTATTTATTGCTCCTGT ATTTGTCTCGTAGTTCGTATCGTTTCGGAGTGTTTTTGCGTTGTTGCGGG ACATTTCAGTACGTTTAGGGGGATGATTAGCATTGTTGTGACTTGTTGTT TTATGTTCCGAAATTGGTGTTGTTCGCCGATGATTCGTTCCTTAGCAACG GATTTGGATTCCTCCGGCCCGCCCGGTTGTTGCCACTTTTGTTTTGCTTT TCAACGCTCACAAACTGAGCTAGGGTCAGGGTATGAAGCGTTCTGTCGAT TGCCTACAGGAGTTTGATCCGTGAGAAACCTGCTTTTAACACGAGAGAGT ATTAATATAATGTTTTTTGTTGTAGCGTTGATGCAATCGAGGAAACCTAA CCCTGAATTAAATGGAGTGGGCAAAAAATGCACTTGCAACTATAATGAAC AGGACGTTAACCGCACACGCGTTGTCTCCCTGTTGGGCCAACGGTGTGGT GGCGAACTTTTGCAGGTAGGACTCTGTAGGGACCATCGTATCATGTTGGT TTCACGCGCGCGGGGGGGTGGGGTAGGGTTTAGACCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2780798..2786537+

>mRNA_Ecto-sp6_S_contig9.18298.1 ID=mRNA_Ecto-sp6_S_contig9.18298.1|Name=mRNA_Ecto-sp6_S_contig9.18298.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2780798..2786537+ (Ectocarpus species6 EcLAC_371)
ATGGAGCTCACCCGTAAGAGCGCGGGCCTCGCCCTCTTCTTCCTCGGGCT
TGCCGCTAGGCAAGCCTCGGCTGTCACCACCTGCCTCGCCCTCTTCACCG
CGGTTGAGGCCATCTCCGGCACAGGGACGGTAGAGCTCGAGGGCGGCTTT
ACGTGCGACACACACATCAAGGTCGCTGCCAGCCAGGATGTCACCATCAG
CGGCGCCTACACGATCACCCTGGGCGTACTCTTCGCCGGCAGCACGGCCA
CGGACGCGGGGGGCAGCCTGTTCGAGAACGAGGGCACGCTGAAGCTCGAC
GGCATCACGTTCGCCTCGGAAACAACGGATGGGAACCGCGCTGTCTGGAA
CACGGGAACGCTTTCGCTGGAAGGCTGCACGTTCGAACTTTACCCGACCG
GAGCATTTCTCTCGAGGGGCGGTGTGATCTACTCCGACTCTGCAGGAACG
ATTTCCATCTCAGACTCCACCTTCACATCAAACCTCGCGAGCGAGAGGGG
CGGTGCAGTGTACGCCATTGGCTCCGAAACCATCGCCATCACGGACTCCC
TTTTCAGGGGCAACGAAGTTGGGACGGGCGTTGACGCGAACGGCGCAGGA
GGCGACGTTTACGCAGGCACCAATGTTGAGCTCACGGTCACTGGAACTAC
GTTCTCGACGTCTGCGGCCGAGTACGGTGGAGCTGCCATCGAGTGCTGCG
GCGCGGTAATCTACGACACTGTCTTCACGGGAGCGGACACTGCCAGCGAC
GGCGCGCACTACGGCGGGGCGCTGCTGGTCAACCGCCCTGACCAAGACGG
ATGCCCTAGGGAGCTTGACCTCTCAAACTCGACGTTCAGCGGATGCACCG
TAGGAAGCACTACAGGAGCGGGCGGTTCCGTGGCTATCTTCGATACTTCG
GCAACAATTACCGACTGCACTTTTGAGAGCAGCGTTGGCACGGCGGTGCT
GTTCTCGTCTTCCAGCGATTCCGGAGAACACCAGCTTCTCATGGACTACG
TCCAGTTCAACCTCAACACCTTCCCTGCTGAGGCGTACGCCACCGACACT
GAGCAGGGAGCTGCGATCGTCGTGACGAACACGGGCGTGGCGGATGGAGA
GACGACGGTGACCATGGGCGTATTCAACGACATGTACTGCTTCGCCAATG
AGCCTTACGAGTGCGAGTTTGTGTACGATCAGTCGGACATCGTCCACAGC
GGGGAGTTTAAGTGCCAAATCTGCGACATCGAAGGGGAGCGACAACAAAG
TGGCACCGACGACGACTTGATCGACCCAGAGAGCAGAAGCATCGACCAGA
GTTCGAGCTCCAACTCGTGGGACTCCAAGGACTACATTATCATTGGCCTG
TCGGCAGCTTTGGCATTGTGCATCATCCTCTCAATCGGCTTTCTGGTAGC
ACGGGCGTACAAAAAACACAGGGCGCCCAGTGAAACACAGCCCCCTCCCA
CAACAGGCACTCCCGCTCCACCTGCCCCACCCGCACCGGCAGCCCCACCA
GCCACAACAGGCACTGCTGAGCCTGTCGAATCGTAA
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