mRNA_Ecto-sp6_S_contig9.18293.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18293.1
Unique NamemRNA_Ecto-sp6_S_contig9.18293.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 759 bits (1961), Expect = 7.770e-267
Identity = 433/483 (89.65%), Postives = 445/483 (92.13%), Query Frame = 1 
Query:    1 MGLTRKSAGLALFFLGLAAKQASAVSTCLALITAVEAISGTGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGTLKLDGITFATETTDGNRAVWNXXXXXVEDCTFELYPTGAFLVRGGVIYSDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNEVGTGVDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAETYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANDPYECEFVYDQSTVVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 1449
            MG TRKSA LALFFLGLAA+QASAV+TCLALITAVEAISGTGT+ELE GFTC+ +ITVAASQDVTISGAYTITLGA FAGST+T+AGGSLFENEGTLKLDGITFATETTDG      XXXXX      ELYPTG FL RGGVIYSDSAG I+IS STFKSNLASE XXXXXXXXXXXXXXXXX    NEVGTGV ADGAGGD+YAGTNV+LTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADT         ALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAE YATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFAN+PYECEFVYDQS +VHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL
Sbjct:    1 MGFTRKSAVLALFFLGLAARQASAVTTCLALITAVEAISGTGTVELEGGFTCEAYITVAASQDVTISGAYTITLGAPFAGSTNTDAGGSLFENEGTLKLDGITFATETTDGXXXXXXXXXXXXXXXXXELYPTGIFLSRGGVIYSDSAGTISISDSTFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVAADGAGGDVYAGTNVDLTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTXXXXXXXXXALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 483
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 606 bits (1563), Expect = 2.530e-206
Identity = 357/456 (78.29%), Postives = 383/456 (83.99%), Query Frame = 1 
Query:    1 MGLTRKSAGLALFFLGLAAKQASAVSTCLALITAVEAISGTGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGTLKLDGITFATETTDGNRAVWNXXXXXVEDCTFELYPTGAFLVRGGVIYSDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNEVGTGVDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAETYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANDPYECEFVYDQSTVVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVV 1368
            M L+RKSAGLALFFLGLAA+QASAV+TC ALITAVEAISGTGT ELE  FTCDTHITVAASQDVTISGAYTITLG LFAGSTDT+AGGSLF NEGTLKLDGITFAT           XXXXX      ELYPTGAFL RGGV+YSDSAG I+IS STF SNLASE XXXXXXXXXXXXXXXXX  RGNEVGTGVDADGAGGD+Y GTNVELTVTGTTFSTS AEYGGAAIECCGAVIS+  F              ALLVNRPDQD CPR+LDLS+STFSGCTV STTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLM+YVQFNLNT PAE Y TDTEQGAAIVVTNTGVADGETTVTMGEF+D+YCFAN+PYECEFVYDQS +VH+GEFKCQICDI+G +Q SGTD DL  + ++S   +S      I+IGLS AL L +++
Sbjct:    1 MELSRKSAGLALFFLGLAARQASAVTTCPALITAVEAISGTGTAELEGSFTCDTHITVAASQDVTISGAYTITLGPLFAGSTDTDAGGSLFMNEGTLKLDGITFATXXXXXXXXXXXXXXXXXXXXXXELYPTGAFLSRGGVVYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDADGAGGDVYVGTNVELTVTGTTFSTSVAEYGGAAIECCGAVISNCTFXXXXXXXXXXXXXXALLVNRPDQDPCPRDLDLSDSTFSGCTVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMNYVQFNLNTLPAEAYVTDTEQGAAIVVTNTGVADGETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQSSSSNSWDSKDYIIIGLSAALALCIIL 456
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 1.870e-166
Identity = 282/388 (72.68%), Postives = 300/388 (77.32%), Query Frame = 1 
Query:  121 TGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGTLKLDGITFATETTDGNRAVWNXXXXXVEDCTFELYPTGA--FLVRGGVIYSDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNEVGTGVDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAETYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANDPYECEFVYDQSTVVHSGEFKCQICDIEGERQQ-SGTDDDLID 1275
            TGT+ELESGFTCD HITV ASQDVTISGAYTITLGALFAGST T+AGGSLF NEGTL+LDGITFATE TDGNRAVWN XXXX      EL+P+G   FL RGGVIYSDS G IAISASTFKSN+ASER                 LF  NEVGTGV+  GAGGD+YAG NVELTVTGTTFSTSAAEY                                LLVNRPDQD C RELDLS++ FSGC+V STTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNT PAE YATDTEQGAAIVVTNTGV +G TTV MGEFNDMYCF NDPYECEFVYDQS +VHSGEF CQ+C I+G RQ+ SGTDDD ++
Sbjct:    4 TGTVELESGFTCDAHITVDASQDVTISGAYTITLGALFAGSTATDAGGSLFVNEGTLELDGITFATEATDGNRAVWNGXXXXXXXXXXELFPSGGGEFLARGGVIYSDSDGEIAISASTFKSNIASERGGAVYAIGSETLTITDSLFTVNEVGTGVEEGGAGGDVYAGINVELTVTGTTFSTSAAEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVNRPDQDACSRELDLSDTIFSGCSVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTLPAEAYATDTEQGAAIVVTNTGVEEGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVE 391
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: A0A6H5L8Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q9_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 6.370e-110
Identity = 215/272 (79.04%), Postives = 224/272 (82.35%), Query Frame = 1 
Query:    1 MGLTRKSAGLALFFLGLAAKQASAVSTCLALITAVEAISGTGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGTLKLDGITFATETTDGNRAVWNXXXXXVEDCTFELYPTGAFLVRGGVIYSDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNEVGTGVDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGAHYGGALLVNRPDQDGCPREL 816
            MG T K+AGLAL FLGLAA+QASAV++CL LITAVEAIS TGTIELE GF CDT ITV A QDVTISGAYTIT+GA FAGSTD +  GSLF NEG LKLDGITF TETT+GNRAVWN     VE CTFELYPTGAFL RGGVIYSDSA  IAIS S FKSNLASE XXXXXXXXXXXXXXXXX    NEVGTGVDADGAGGD+YAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDG          R  +D CP  L
Sbjct:    1 MGFTSKTAGLALLFLGLAARQASAVTSCLDLITAVEAISDTGTIELEGGFNCDTFITVTAGQDVTISGAYTITIGAGFAGSTDED--GSLFVNEGILKLDGITFVTETTNGNRAVWNAGELSVEGCTFELYPTGAFLARGGVIYSDSAEAIAISNSIFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 270
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: A0A6H5K6C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C2_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.600e-57
Identity = 114/144 (79.17%), Postives = 120/144 (83.33%), Query Frame = 1 
Query:    1 MGLTRKSAGLALFFLGLAAKQASAVSTCLALITAVEAISGTGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGTLKLDGITFATETTDGNRAVWNXXXXXVEDCTFELYPTGAFLVRGGVIY 432
            M LTRKSAGLAL FLGLAA+QASAV++CL LITAV+AI  TGTIELE GFTCD  ITV A QDVTISGAYTIT+GA FAGST   A GSLF NEG LKLDGITFATETTDGNRAVWN     VE CTFELYPTGAFL RGGVI+
Sbjct:    1 MVLTRKSAGLALLFLGLAARQASAVTSCLDLITAVDAIFDTGTIELEGGFTCDIFITVTAGQDVTISGAYTITIGAGFAGSTG--ADGSLFVNEGGLKLDGITFATETTDGNRAVWNVGTLSVEGCTFELYPTGAFLSRGGVIF 142
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: A0A6H5L0R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R7_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 3.130e-44
Identity = 93/130 (71.54%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:  427 IYSDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNEVGTGVDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGAHYGGALLVNRPDQDGCPREL 816
            IYSDSAGII IS S FKSNLASER                 LFRGNEVGTGVDADGAGGD+YAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDG          R  +D CP  L
Sbjct:   14 IYSDSAGIITISNSIFKSNLASERGGAVYAIGSETLTITDSLFRGNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 143
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.950e-19
Identity = 120/444 (27.03%), Postives = 179/444 (40.32%), Query Frame = 1 
Query:  103 VEAISGTGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGT-LKLDGITFATET----TDGN-RAVWNXXXXXVEDCTFELYPTGAFLVRGGVIY-----SDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNE-VGTG-VDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTA-----------SDGAHYGGALLVNRPDQDG---CPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAETYATDTEQGAAIVVTNTGVADGETT---------------------------------------VTMGEFNDMYCFANDPYECEFVYDQS----TVVHSGEFKCQIC 1224
            V+AI+    +E+  G   D +  VA ++D  +                D  +   L   EG+ L LD +TFA E     + G  RAVWN     V+ C FE     +    GG+       S S+  +++  STF  N+A                     F GNE VG G     GAGG +YA   V +TV  ++F    + YGGAA+  CGA I ++ F   +             SD       L +    Q G   CP  L +S + F   +   +TG GG++A  D+S ++ + +  SS+G  + F +S DSG  QL ++ +QFN N   A +       G+A+++  TG     TT                                         +G   D+YCF NDPY+CE  +  S     V  +G  +C +C
Sbjct:   74 VDAITLPTGVEVSIGSAPDENFLVAVAEDFLV---------------PDPTSASLLVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLQVDGCVFESLSFSSQQDGGGIYSTAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLSRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCP-PLFVSGTMFESNSA--STGYGGAIASVDSSLSVFNSSVLSSLGGGIYFGTSDDSGRDQLELELLQFNWNGGSASS---PDLVGSALLLERTGTPASNTTGPLEQLDPSTSSAXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVATDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNVC 496
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BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.100e-17
Identity = 118/446 (26.46%), Postives = 178/446 (39.91%), Query Frame = 1 
Query:  103 VEAISGTGTIELESGFTCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGT-LKLDGITFATET----TDGN-RAVWNXXXXXVEDCTFELYPTGAFLVRGGVIY-----SDSAGIIAISASTFKSNLASERXXXXXXXXXXXXXXXXXLFRGNE-VGTG-VDADGAGGDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTA-----------SDGAHYGGALLVNRPDQDG---CPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAETYATDTEQGAAIVVTNTGVADGETT-----------------------------------------VTMGEFNDMYCFANDPYECEFVYDQS----TVVHSGEFKCQIC 1224
            V+AI+    +E+  G   D +  VA ++D  +                D  +   L   EG+ L LD +TFA E     + G  RAVWN     V+ C FE     +    GG+       S S+  +++  STF  N+A                     F GNE VG G     GAGG +YA   V +TV  ++F      YGGAA+  CGA I ++ F   +             SD       L +    Q G   CP  L +S + F   +   +TG GG++A  D+S ++ + +  S++G  + F +S DSG  QL ++ +QFN N     + ++    G+A+++  TG     TT                                           +G   D+YCF NDPY+CE  +  S     V  +G  +C  C
Sbjct:   95 VDAITLPAGVEVSIGSAPDENFLVAVAEDFLV---------------PDPTSASLLVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLDVDGCVFESLSFSSQQDGGGIYSMAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLGRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCP-PLFVSGTMFESNSA--STGYGGAIASVDSSLSVFNSSVLSTLGGGIYFGTSDDSGRDQLELELLQFNWN---GGSSSSPDLVGSALLLERTGTPASNTTGPLEQVDPSTSSXXXXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVARDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNAC 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVA4_ECTSI7.770e-26789.65Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FV99_ECTSI2.530e-20678.29Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FVA0_ECTSI1.870e-16672.68Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5L8Q9_9PHAE6.370e-11079.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6C2_9PHAE3.600e-5779.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0R7_9PHAE3.130e-4471.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAJ9_9PHAE8.950e-1927.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G311_ECTSI1.100e-1726.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2727512..2734795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2768
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-14_000350.1
Cds size1452
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18293.1prot_Ecto-sp6_S_contig9.18293.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2727512..2733479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350547.8205428-CDS-Ecto-sp6_S_contig9:2727511..27279371682350547.8205428-CDS-Ecto-sp6_S_contig9:2727511..2727937Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2727512..2727937 +
1682350547.8312984-CDS-Ecto-sp6_S_contig9:2730771..27310981682350547.8312984-CDS-Ecto-sp6_S_contig9:2730771..2731098Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2730772..2731098 +
1682350547.840818-CDS-Ecto-sp6_S_contig9:2731512..27317491682350547.840818-CDS-Ecto-sp6_S_contig9:2731512..2731749Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2731513..2731749 +
1682350547.8502185-CDS-Ecto-sp6_S_contig9:2731890..27319951682350547.8502185-CDS-Ecto-sp6_S_contig9:2731890..2731995Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2731891..2731995 +
1682350547.8619661-CDS-Ecto-sp6_S_contig9:2732365..27325441682350547.8619661-CDS-Ecto-sp6_S_contig9:2732365..2732544Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2732366..2732544 +
1682350547.8702714-CDS-Ecto-sp6_S_contig9:2733301..27334791682350547.8702714-CDS-Ecto-sp6_S_contig9:2733301..2733479Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2733302..2733479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350547.8787622-UTR-Ecto-sp6_S_contig9:2733479..27347951682350547.8787622-UTR-Ecto-sp6_S_contig9:2733479..2734795Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2733480..2734795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18293.1

>prot_Ecto-sp6_S_contig9.18293.1 ID=prot_Ecto-sp6_S_contig9.18293.1|Name=mRNA_Ecto-sp6_S_contig9.18293.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=484bp
MGLTRKSAGLALFFLGLAAKQASAVSTCLALITAVEAISGTGTIELESGF
TCDTHITVAASQDVTISGAYTITLGALFAGSTDTEAGGSLFENEGTLKLD
GITFATETTDGNRAVWNTGTLSVEDCTFELYPTGAFLVRGGVIYSDSAGI
IAISASTFKSNLASERGGAVYAIGSETLTIADSLFRGNEVGTGVDADGAG
GDIYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASD
GAHYGGALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTS
ATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAETYATDT
EQGAAIVVTNTGVADGETTVTMGEFNDMYCFANDPYECEFVYDQSTVVHS
GEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLAL
GLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL*
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mRNA from alignment at Ecto-sp6_S_contig9:2727512..2734795+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18293.1 ID=mRNA_Ecto-sp6_S_contig9.18293.1|Name=mRNA_Ecto-sp6_S_contig9.18293.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7284bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2727512..2734795+ (Ectocarpus species6 EcLAC_371)
ATGGGGTTAACCCGTAAGAGCGCGGGCCTCGCCCTCTTCTTCCTCGGGCT
TGCCGCTAAGCAAGCCTCGGCTGTCAGCACCTGCCTCGCCCTCATCACCG
CGGTTGAGGCCATCTCCGGCACAGGGACGATAGAGCTCGAATCCGGCTTT
ACGTGCGACACACACATCACGGTCGCTGCTAGCCAGGATGTCACCATCAG
CGGCGCCTACACGATCACCCTGGGCGCACTCTTCGCCGGCAGCACGGACA
CGGAAGCGGGGGGCAGCCTGTTCGAGAACGAGGGCACGCTGAAGCTCGAT
GGCATCACGTTCGCCACGGAAACAACGGATGGGAACCGCGCTGTCTGGAA
CACGGGAACGCTTTCGGTGGAAGACTGTACCTTCGAACTTTACCCGACCG
GAGCATTTCTCGTGAGGGGGGGTGTGGTGAGTGACTGGCGGACAGCCCAC
ACCACCCAAATAACGGCATGCACGCACAAGACACAAGACAACAGAAGTAC
TCTAGCTTTACCTCGTCGTTTCGCTTCCTGCCTCACGTCCTCTCTATTCT
GCTCGGTAAAGTTTGTAATTTGCTGCTGTAGATCCCAACGCCACACAAAA
TCGTGAGCGGTGGCGGGGTGTCATCTGCCACATTGTGCATTGTATGACGT
CTTGACGTGAATGAGAGGACGTGGCAAGGCAGGCAGCTTATTGGATTTTG
GTGGACGTGGCATTCAATCCTACTTGTGCCTCCTCTCTCTCCGTTGTGTC
CTCTTAAACACATACAAGCAGTTACTACCCATTTCCCCCCCAATCTTGCC
CCCCCCCGATGTACGACACGCATAAGACCAGTAGGCCCTCTCTGATGACT
GACGACTGATGGCCGACAGACTGACTTTTGTTCTCACTATTGTAGTCACT
GCTCAGCTGTTCTTCTTCCACAGGCTGAAAAATTGTTCCCGCGCCACATG
CCTTCGGATGAACCCCAACACCTCCTCACCTCACACAGAGCTTTGAACAC
CCTCTCATGAATCTGTGAACAGAGGCCATGCTTGATCGGGGTGGAATGTA
GCATGTAGTTCGCGCTACTCTTTTATCCGGCATTACCCCTCTCACTGGGA
TACCTTAtgttTTTTTTTTTTTTTTTCTCTCCGCGCATCCTATCGTACGA
TCGATTTCCGTGGTCCTCTCTCTATTTTTGTGGTGTATTTTTTTTTTGGG
AGGCAACAAAACTACCCCGCGCGGACAGCAGCACCAGTGCCATGGGTGGC
TGAACAAAGGCCGGACGGCCGCCAATTGGATTACAACACAATGAGTTGAG
CGTAGGGCGGTGCCCGTAAATATTTTTCTGAAATGACAGGTTGCATACTT
TCTCCGCCTGTTTTATCAGTTCTGCTCACCCTTGCTTGCTCATCAGTTCT
GCTCAAAGTCCGTTATGCAAAGGAAAAGAAATATATCTCAAACGGGCATG
TCACAAGTGAGATGGTTTACTTTCTAGAAATTGATACACTACGAAGCAGA
GGAAGAAACAGGGGGTCTGTGAGTGTACGTCTAGAATGTATGCAAATGTC
TCTGTCACACCTCTCACCAGGGAAGGAATTGGGGCTGAAGTTTCCCTCCG
TATGCTGTCTCTCTACGGCAATAGTTGTACACGAATCAATGTCCGAATGC
CATGTGTTATCTCACAGCTACAGGCATTCATCATGTTAGGGATGATGCGC
AAGTAAATAATGTTCGTGCAACTTGAGTTTTCCGATTTGGAAGTATGGAT
ATAGTAGGAATCTCTTTATCTCACCACCGCGAAACACACCAGTCACTACT
CACATGAGGTTCCCAAGCGAACACGCAAAAGGGTGACATACACAGCAGTG
AAATGGTTGTGTCGTGCGCGAAAAATACTTAAAAGTGAGAAAACGGCCAC
TCTGTCATGTCACTCTCACATGGCTCAAGGAGCACGAACGGCACGCCAAC
TACCTACCGTATATGACACAAGATAACACACCTACATAAGAAACCACACA
CCTCACAGAATACGAAACCCCGGTTATATTTTGGGCGTTTCTGACAACCC
ATCGATTCATCACCCGGGATACACAAGAGAACACTCCCCGGTGATCAAAT
AAGGTTACGCGGCATATATTCACGGGGCTCCTCCTATAATATCACCGGGG
TGACAGCATCTGCCCCTGGGCATCACGCACAACACACACCCTCTGTGTGC
GGGAAATGCCCCGCTTGGACCAACAACATGAACATGCAGGAAGAAGAGCA
GACTGTCGCCGCAAGTACCTCCGCGCCTTCCACAACTGCTTCCACCGCAG
CAGCTGGCACAGCAACAGGCGACAACATAACAGCCACCGCCTCGCCTCAC
CAGCAGCGAGTTGCTGACTCGCTCTCGGCAGCACGTACCAGTACCGCAGA
CGAGTCAACACGCACCACCAAAGCCTCTCAGCTGGTGATGGGGGACACCC
CCTCATTATCATACCCTCAAACACACCCTGTGGGTGTTCGAACGTGCTAC
AACGTGACACCCCCTTGTTATCACACCTCCTCATTGATCACACCCCCAAA
CACACCCTGTGGGTGTTCGGACGTGCAATCACCCCCCCCCGGTGTATCAC
ACCCCCTTAGCGGCCCCTGCGAGCTGCAATTTTTCACCCGGGGTACATGA
GATATCATACCCCCACAGGATACCACGCCCGGTGATAATATTCTTAGTCC
CAAAAATGTTCATCACCGGGGTGTGTTATCTTTCGTCATTTACGGTACAT
GTCTCCCAGCCCCCACCATAACACGCGCATACCGTGTACCACGACACAAG
ATAACATACCCCCTGGACCGGTTTTCAAAGCTCGATTTATCAAAAGTAGA
GAGAATCGCAGCGCCCGCAAAGGCGGCGTTGAAGCCGTCTGGTCAGAGCT
CTCCGAAAGCGCACCGTTTCGTTCATGCATCCTCTTCTTGGTGGAGTAAT
CGAGCTTTGAATTTCGATCCAGGGTTTGTGGTATCATTTTTCATGTACGG
CTTACATCTGTGCAAGTAACACCGCCGACGATAGCCTATTCAATGGCCTC
TTGGAATGTCTAAATGTAAATAGTACACGCCGCCGCGAACTCAAAATTGC
AAGCTGTAGTCAGTGAACCCCGCGACTGATGGGTGTCCTGCTGTTGGCAC
GTTGGGATTCAATCCGAGCGAACGCGTGCTTGCTCAACAGCTGTTGACGC
TGAAGTGTTGCACGTGCCCCCCACTGCTATTTGTTCCTTCTCTGCTGCCT
GCTGTGCCAGATCTACTCCGACTCTGCGGGAATAATTGCCATCTCAGCCT
CCACCTTCAAATCAAACCTCGCGAGCGAGAGGGGCGGTGCAGTGTACGCC
ATTGGCTCCGAAACCCTCACCATCGCGGACTCCCTTTTCAGGGGCAACGA
AGTTGGGACGGGCGTTGACGCGGACGGCGCAGGAGGCGACATTTACGCAG
GCACCAACGTTGAGCTCACGGTCACTGGCACTACGTTCTCGACGTCTGCG
GCCGAGTACGGTGGAGCTGCCATCGAGTGCTGCGGCGCGGTAATCTCCGA
CACTGTCTTCACGGGAGCGGACACTGCCAGCGACGGCGTGAGTCGACGGA
AGGGTTCAAGAGAGAAACGAACACAAGAAACTGCTGTTCTGGTCATGTGC
TGTACATTTGATCTGCCTCGGTTTTGGGGAGGGAGAGAAACTCCTTTGCC
GTTGGCATATCTTGACGGGAACGCTCCTGTTTCCACCGCTTGACTTGACA
TGCCTGCTGCACAACCAAGCCAGGACTCACGTATTGTCTCGAAGTGGGCA
TGTTGGCTTATCTGTTTTTCGCATGCCCTGCATGCCTTGGGCATGCCTTC
CACCGCCGTCCAAATAGTTGCACAGTAGCATGGCCCTTTCACGATGACTT
AGGGTTCGTACTGCTGTATCTCTCCACACCGAGCATCATTATGATTCGCT
TCTTTTTTCCCCATCTCCCCGACGACAAATGCAATCTTTATCTTGGGTCA
GGCGCACTACGGCGGGGCGCTGCTGGTTAACCGCCCTGACCAAGACGGAT
GCCCTAGGGAGCTTGACCTCTCAAACTCGACGTTCAGCGGATGCACCGTA
GGAAGCACTACTGGAGCGGGCGGTTCCGTGGCCATCTTCGACACTTCGGC
AACAATTACCGACTGCACTTTCGAGAGCAGCGTTGGCACGGCGGTGCTGT
TCTCGTCTTCCAGCGATTCCGGAGAACACCAGCTTCTCGTGAGTGACGCG
CGTTGTTGTCGTCTAGTAGTGCTTTCTTGTCGACGATTCCAGTTGTGTGA
GGATGTTGACATGTGCCGCATCTTGACCTATCACTGCTGTCCGCTGCTTC
CCGAACGCCTCCTTTTGTCTGCGTTTCAGATGGACTACGTCCAGTTCAAC
CTCAACACCTTCCCCGCTGAGACCTACGCCACCGACACTGAGCAGGGAGC
TGCGATCGTCGTGACGAACACGGGCGTGGCGGATGTGAGTTTCGCTAGGC
CGTGATGGCTTCGGAAATGGGGTTGCTTTCGATGTGTTGCAAGTGTTCTT
GAGCCAGAGGCAAAACCCTCAGATTTTGGTAAGAACTATTCGATGTAATA
CTTTTGTTCGCCTCATGGGGGTGACACCTCTGCCATTTCTTTTCCCTTCG
GAAGGTGCTGCGTTGGGTGTTGGATATTCCTGTAGTAGTCGTGCAGGGAA
TATTTGAGACCGCCTTGGGCGAGGCGGAAGGAACCGGCGGTCGCTGGGGC
CCCCTGAGCGACCAACACTATTTACTCCCCTTGGATGCAGATCAATCATG
GAAAGTTCTGGCTCGTGTCTAATATCATCCTATATTTCATTCCATTCGTG
CCAGGGAGAGACGACGGTGACCATGGGCGAGTTCAACGACATGTACTGCT
TCGCCAATGACCCTTACGAGTGCGAGTTTGTGTACGATCAGTCGACCGTC
GTCCACAGCGGGGAGTTTAAGTGCCAAATCTGCGACATCGAAGGGGAGCG
ACAACAAAGCGGTACCGACGACGACTTGATCGAGTGAGTTCAGTGATGTG
TATTTGCCGCCGCCTGTTGAGAAAAAAAGACAAAGTGTCAGTTGAAAGCG
TCCCTTCCGTAGAGCGCTAATGTGTTGTCTGACAACAGGTTGCAGGTTTG
TTCTCCATCCCATGGATTTCCCGACAAGAAAAAGATTGGAACGTTGTAGT
GATATATTTGTGATTGTGTGACTTGGCCTCGTTGGTGATTCTGATTCGTC
GGTCGTCTTTGGCGGCATTTCCTCTGTTGTAGATGTCGCTGGCTATGTAG
CCGGAGACCGTTGAGCAGCGAAAAGAATATTGTTGTATTGGGGTCTTTTC
CTGGGCACCCTCTGGACAGAGAGAGGTGCTTGTCTCGTCCGCAAGGCAGC
AATGAGGGGATTTGACGGCAATAAGTAGGAGTGTGGGGGAGAACTAAGTT
TTATAGATTTACGAGAAATGTGTCCGATGGTATCATAGATTGGACACCGC
AAGATGGCTCCTTTCTAGCCGGAAGGTCGTACCCCATGGAAAGGGTATGA
TGCAGGGGAGCTGAACAAAAACGAGATTAGAGGGGTAAGATGCACATGCA
CGCACAATGGTTTGCGCGACGTACAGTAGGTCAAATGCAAAAATCAAGGG
TGGAGGGATGGCGATGAGTTGTTGTCCTTTGTCGGTTCATGAAAAAGCGC
GTGCTGTCTGACTCCACTTTCATGTCACGTCCATCGGCACTGACCCCTCC
TTTCACCGTTGTTGCCTCTACCTTTGCTTGTTTATTTCAGTGCAAGCGAG
CGCAGCATCGACGGAGACTCTTCGTCCGACAACCAGGGCATCGTCATTGG
CCTCTCGCTCGCCCTCGGACTGACCCTGGTCGTGATCGGAGCCTTGGCGG
TATGGAAGTTCAGGGTGCGCAAGAATGCGCGCCGTCTGATGGAGGACATG
GGCGAAGGCGACTTGTAAGCTTGCCCTGAGCAAGGCCGATGGTGATTTTA
TCATCTATGATCCACCATCTATATGATCTACAAGGTGCCATCGCCCGCGG
GAGACAACCCAAGACACGGGTGTTTCGTGTGAATGGAAATGAAATGCGCT
AGTGTGGTGGAAGTGCGGAGTTTGCCAGTTCGCGACCCTTGGCACCTGAC
GGTGCGTAGAGAGAGGAGAGAGGAGCAGCATATCTATTTGGCGGTTTGCC
AAGATGATACGTGCCGCGTGTGGAACTTAGCATATTTGGTAGCCTTTTTT
ACCCCCCTTCGTAGGAAAAGAAAACACGGCTCGGTTCGTATCTAAGGAAG
GTTGCCGCAGCAGTGGAGCGGTCCCGATTGTTCTCGCCGGAGGTTGAACG
CCCACGGGATCATTAAAATGTATTCTAAAGTACGTTGTTGTCGGCTGGAT
TGAGAGGTAGGAGGCAGCCCCTCAAACCCGTCAGCCAGTCAGAAGACCTT
GGTTTTCAGCGGTGTAGTGGACTTGTACCCGCGGGGGGCGGGGCGGGAAA
GGGGCCACGAATATGAACGTGTCGTCTCGTCGCCGCTGCCGGCTCGCCTT
GCCACGAACCGTGATTGTTGTCTTGTGCTGTTGGCCTCCATCGCAAGAAC
CCTTGTCTATCGTTCGTTCGTCCGTTTTTTTGTTTGTTGTGCACCGGCGC
CTCGTGTGCCATCGAGCGGGCGAGCGGATTTGCGAGCTGACTTGGAGTAG
ACTATCGCATGCCTCAGTTTCGTGATGACTACGGCTGTGGCATCGTGCAC
GGTGATGCGCTCCAAGGTTGTTTGTTGAGAGCCATGGGAAATCAGCCACT
GACACAACCCTTGCTTGTCTGGCATCATGTTTGTTGTGCCCAAGCGCATG
CATGCCGTGCGGACTAGGCGTGTGAAGTCTCTCTTATCAGTAAACTTTTT
TTTCTTTTGTGTGTTGGCATCTGCAGGCCGGGTGGTTGGATTGCTTCCCT
TGGTCAGTGGCATGCTAACGCTTTGACTAGTTTTCGGCGTCTAGCACGTC
TGTGCTACCCCCGTAGGTTTGATGGATGTTGTTTGTTGGGTAAGGGTTTG
TGCAGTGCGGGGGGGGTGGCGGTAGGGAAGCACAGAGGGCAGTGGACGCT
AGAGAATGGTCTGTGTCGTACATAGTGTAGTCTTGCAGAAAATGTTGGGT
GTACCAGTACGAATTATCGTGCCAAAGGTGCGAATTATGGTTTCAGTAGG
GCGTGCACTGTCTTATCTTATCTGTCCCTGGTGACCGTTGTTATTTGCAT
AATTCTCTTTTTAAATGAGCATGCGCCGCGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2727512..2734795+

>mRNA_Ecto-sp6_S_contig9.18293.1 ID=mRNA_Ecto-sp6_S_contig9.18293.1|Name=mRNA_Ecto-sp6_S_contig9.18293.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1452bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2727512..2734795+ (Ectocarpus species6 EcLAC_371)
ATGGGGTTAACCCGTAAGAGCGCGGGCCTCGCCCTCTTCTTCCTCGGGCT
TGCCGCTAAGCAAGCCTCGGCTGTCAGCACCTGCCTCGCCCTCATCACCG
CGGTTGAGGCCATCTCCGGCACAGGGACGATAGAGCTCGAATCCGGCTTT
ACGTGCGACACACACATCACGGTCGCTGCTAGCCAGGATGTCACCATCAG
CGGCGCCTACACGATCACCCTGGGCGCACTCTTCGCCGGCAGCACGGACA
CGGAAGCGGGGGGCAGCCTGTTCGAGAACGAGGGCACGCTGAAGCTCGAT
GGCATCACGTTCGCCACGGAAACAACGGATGGGAACCGCGCTGTCTGGAA
CACGGGAACGCTTTCGGTGGAAGACTGTACCTTCGAACTTTACCCGACCG
GAGCATTTCTCGTGAGGGGGGGTGTGATCTACTCCGACTCTGCGGGAATA
ATTGCCATCTCAGCCTCCACCTTCAAATCAAACCTCGCGAGCGAGAGGGG
CGGTGCAGTGTACGCCATTGGCTCCGAAACCCTCACCATCGCGGACTCCC
TTTTCAGGGGCAACGAAGTTGGGACGGGCGTTGACGCGGACGGCGCAGGA
GGCGACATTTACGCAGGCACCAACGTTGAGCTCACGGTCACTGGCACTAC
GTTCTCGACGTCTGCGGCCGAGTACGGTGGAGCTGCCATCGAGTGCTGCG
GCGCGGTAATCTCCGACACTGTCTTCACGGGAGCGGACACTGCCAGCGAC
GGCGCGCACTACGGCGGGGCGCTGCTGGTTAACCGCCCTGACCAAGACGG
ATGCCCTAGGGAGCTTGACCTCTCAAACTCGACGTTCAGCGGATGCACCG
TAGGAAGCACTACTGGAGCGGGCGGTTCCGTGGCCATCTTCGACACTTCG
GCAACAATTACCGACTGCACTTTCGAGAGCAGCGTTGGCACGGCGGTGCT
GTTCTCGTCTTCCAGCGATTCCGGAGAACACCAGCTTCTCATGGACTACG
TCCAGTTCAACCTCAACACCTTCCCCGCTGAGACCTACGCCACCGACACT
GAGCAGGGAGCTGCGATCGTCGTGACGAACACGGGCGTGGCGGATGGAGA
GACGACGGTGACCATGGGCGAGTTCAACGACATGTACTGCTTCGCCAATG
ACCCTTACGAGTGCGAGTTTGTGTACGATCAGTCGACCGTCGTCCACAGC
GGGGAGTTTAAGTGCCAAATCTGCGACATCGAAGGGGAGCGACAACAAAG
CGGTACCGACGACGACTTGATCGATGCAAGCGAGCGCAGCATCGACGGAG
ACTCTTCGTCCGACAACCAGGGCATCGTCATTGGCCTCTCGCTCGCCCTC
GGACTGACCCTGGTCGTGATCGGAGCCTTGGCGGTATGGAAGTTCAGGGT
GCGCAAGAATGCGCGCCGTCTGATGGAGGACATGGGCGAAGGCGACTTGT
AA
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