mRNA_Ecto-sp6_S_contig9.18290.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18290.1
Unique NamemRNA_Ecto-sp6_S_contig9.18290.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: D7FVA7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA7_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 3.800e-113
Identity = 208/218 (95.41%), Postives = 209/218 (95.87%), Query Frame = 3 
Query:   75 MKRAIATLMGGLMASEAFVLPAAVSRGLAAAGSXXXXXXXXXXXXXXXXXXXXXXQHSR----VAFLNKAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAVQP 716
            MKRAIATLMGGLMASEAFVLPAAVSRGLAAAG XXXXXXXXXXXXXXXXXXXXXX        VAFL+KAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAVQP
Sbjct:    1 MKRAIATLMGGLMASEAFVLPAAVSRGLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAFLHKAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAVQP 218
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: A0A7S3PZM0_9STRA (Peptidylprolyl isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZM0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 6.690e-50
Identity = 95/158 (60.13%), Postives = 115/158 (72.78%), Query Frame = 3 
Query:  246 SRVAFLNK----AGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLA 707
            SR +FLNK    A  AAA  +AAV+ +P  A A++ D     +  TT+SGLKY VT  G G++P P   VKAHYTGWL+ F  E   KFDSSRDRGRPFSFKVG GQVI+ WDE+ LDM++GERR + +PP+LGYG RGAGG+IP  ATLYFDVELL+
Sbjct:   47 SRRSFLNKGAITASTAAAAGIAAVSIAPKAALADDSDPY--ADYTTTESGLKYLVTKEGTGAQPVPNTNVKAHYTGWLDGFQSEK--KFDSSRDRGRPFSFKVGAGQVIRGWDESFLDMKVGERRNVIIPPRLGYGDRGAGGLIPGGATLYFDVELLS 200
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: A0A835ZFS8_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.190e-48
Identity = 93/160 (58.13%), Postives = 114/160 (71.25%), Query Frame = 3 
Query:  246 SRVAFLNKAGLAAATTVAAVTGSPLLARAEEEDEVKV----GEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGA-KFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAV 710
            SR + ++KA +AA     A  G   +A A+ ED         + +TT++GL+Y V   G G++P P + VKAHYTGWL  FGDED + KFDSSRDRGRPF+FK G GQVIKAWDE++L M++GERR I VPP LGYG RGAGGVIP NATLYFDVELL +
Sbjct:   38 SRRSLMDKAAVAAV----AAAGMFNVAPAQAEDAPAAVDVHADFITTETGLRYKVIKEGTGAQPPPSSNVKAHYTGWLGGFGDEDASVKFDSSRDRGRPFTFKAGVGQVIKAWDESVLAMKVGERRLIIVPPDLGYGKRGAGGVIPANATLYFDVELLGI 193
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: A0A6S8ZS26_9STRA (Peptidylprolyl isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZS26_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.500e-47
Identity = 91/155 (58.71%), Postives = 111/155 (71.61%), Query Frame = 3 
Query:  249 RVAFLNKAGLAAATTVAAVTGSPLLARAEEEDEVK-VGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAV 710
            R  FLN A   AATT + + G+ +L +A   D+     +  TT+SGLKY VT  G G+ P+ G  VKAHYTGWL+ F  +   KFDSSRDRGRPFSFKVG GQVI+ WDE+   M++GERRQ+ +PP+LGYG RGAGGVIP  ATLYFDVELLA+
Sbjct:   41 RRGFLNSA---AATTSSVIIGNAVLPQAAIADDTDPYADFTTTESGLKYKVTKEGDGAIPAAGQTVKAHYTGWLDGF--DSIRKFDSSRDRGRPFSFKVGAGQVIRGWDESFASMKVGERRQVIIPPRLGYGDRGAGGVIPGGATLYFDVELLAI 190
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: A0A7S2YE37_9STRA (Peptidylprolyl isomerase n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YE37_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.370e-47
Identity = 89/141 (63.12%), Postives = 104/141 (73.76%), Query Frame = 3 
Query:  291 TVAAVTGSPLLARAEEEDEVKVGEE-VTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAV 710
            + A VTGS LL+      E   GE+ VTT+SGLKY V   G G+ P PG MVKAHYTGWL+ F  +   KFDSSRDRGRPFSFKVG GQVI+ WDE+   M++GERRQI +PP+LGYG RGAGG+IP  ATLYFDVELL +
Sbjct:   45 STALVTGSALLSPQVTHAEDGSGEDWVTTESGLKYKVLKEGTGAVPEPGQMVKAHYTGWLDDF--DSPKKFDSSRDRGRPFSFKVGAGQVIRGWDESFSSMKVGERRQIILPPRLGYGDRGAGGIIPGGATLYFDVELLNI 183
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: K9U471_CHRTP (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U471_CHRTP)

HSP 1 Score: 169 bits (427), Expect = 3.270e-46
Identity = 82/116 (70.69%), Postives = 91/116 (78.45%), Query Frame = 3 
Query:  366 VTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAVQ 713
            +TTDSGLKYTV   G G  P  G  V  HYTG L     EDG+KFDSSRDRG+PFSFKVGTGQVIK WDEA+  M++GERRQI +PP+LGYG+RGAGGVIPPNATL FDVELL V 
Sbjct:   72 ITTDSGLKYTVLQEGSGEMPKKGQTVVVHYTGTL-----EDGSKFDSSRDRGQPFSFKVGTGQVIKGWDEALSTMKVGERRQIVIPPELGYGARGAGGVIPPNATLIFDVELLKVN 182
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: A0A7S2R5E6_9STRA (Peptidylprolyl isomerase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5E6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.930e-46
Identity = 88/154 (57.14%), Postives = 107/154 (69.48%), Query Frame = 3 
Query:  249 RVAFLNKAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAV 710
            R AFL    +AA+T + A  G   +A A  +D     E  TT+SGL++ VT  G G  P  G  VKAHYTGWL+ F  E   KFDSSRDRGRPFSFKVG GQVI+ WDE+   M++GE+RQ+ +PP+LGYG RGAGGVIP  ATLYFD+ELLA+
Sbjct:   38 RRAFLQNGAVAASTALVAGVGRAPIALAASDDPYADFE--TTESGLRFKVTKEGTGETPPAGTTVKAHYTGWLDGFDSEK--KFDSSRDRGRPFSFKVGAGQVIRGWDESFSVMKVGEKRQVIIPPRLGYGDRGAGGVIPGGATLYFDMELLAI 187
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: A0A6U0I9I6_9STRA (Peptidylprolyl isomerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0I9I6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.370e-45
Identity = 91/161 (56.52%), Postives = 107/161 (66.46%), Query Frame = 3 
Query:  249 RVAFLNKAGLAAATTVAAVTGS------PLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAVQ 713
            R AFL      AA TVA+V  S      P  A     DE    +  T++SGLKY VT  G G+ P  G  VKAHYTGWL+ F  E   KFDSSRDRGRPFSF+VG GQVI+ WDE+   M++GERRQ+ +P +LGYG RGAGG+IP  ATLYFDVELLA+Q
Sbjct:   28 RRAFLQTGAATAAATVASVAVSGGVGVQPAFA-----DEGDYADFETSESGLKYKVTKEGTGAIPEAGQTVKAHYTGWLDGF--ESIKKFDSSRDRGRPFSFRVGAGQVIRGWDESFASMKVGERRQVIIPARLGYGDRGAGGIIPGGATLYFDVELLAIQ 181
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: K0T418_THAOC (Peptidylprolyl isomerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T418_THAOC)

HSP 1 Score: 180 bits (456), Expect = 3.450e-45
Identity = 92/157 (58.60%), Postives = 114/157 (72.61%), Query Frame = 3 
Query:  240 QHSRVAFLNKAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAV 710
            +H R  FL K+   AA T +   G P +A+A+++        +TTDSG+KY VT  G G+ PSPG +VKAHYTGWL++F  E   KFDSSRDRGRPF FKVG GQVI+ WDE+   M++GERRQI +PP+L YG RGAGGVIPPN+TLYFDVELL +
Sbjct:   26 RHDRRDFLAKSS--AAVTASVFGGLPQIAKADDDF-------ITTDSGMKYKVTKEGDGAIPSPGQLVKAHYTGWLDSFDSEK--KFDSSRDRGRPFQFKVGQGQVIRGWDESFSTMKVGERRQIILPPRLAYGERGAGGVIPPNSTLYFDVELLGI 171
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Match: UPI001A0A1B1B (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI001A0A1B1B)

HSP 1 Score: 165 bits (417), Expect = 9.060e-45
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 3 
Query:  303 VTGSP-LLAR---AEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAV 710
            +T SP L+A+   +EEE  + +    TTDSGLKY V   G G+ P  G  V  HYTG L     EDG+KFDSSRDR RPFSFK+G GQVIK WDE + DM++GERR + +PP+LGYG+RGAGGVIPPNATL FDVELL +
Sbjct:   46 ITSSPELIAQNNISEEESSMDLSNATTTDSGLKYIVIEEGNGASPQKGQNVTVHYTGTL-----EDGSKFDSSRDRNRPFSFKLGVGQVIKGWDEGVADMKVGERRTLIIPPELGYGARGAGGVIPPNATLIFDVELLKI 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA7_ECTSI3.800e-11395.41Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S3PZM0_9STRA6.690e-5060.13Peptidylprolyl isomerase n=1 Tax=Chaetoceros debil... [more]
A0A835ZFS8_9STRA2.190e-4858.13Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6S8ZS26_9STRA1.500e-4758.71Peptidylprolyl isomerase n=1 Tax=Ditylum brightwel... [more]
A0A7S2YE37_9STRA2.370e-4763.12Peptidylprolyl isomerase n=2 Tax=Amphiprora paludo... [more]
K9U471_CHRTP3.270e-4670.69Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chrooc... [more]
A0A7S2R5E6_9STRA3.930e-4657.14Peptidylprolyl isomerase n=1 Tax=Eucampia antarcti... [more]
A0A6U0I9I6_9STRA2.370e-4556.52Peptidylprolyl isomerase n=1 Tax=Minutocellus poly... [more]
K0T418_THAOC3.450e-4558.60Peptidylprolyl isomerase n=1 Tax=Thalassiosira oce... [more]
UPI001A0A1B1B9.060e-4560.00FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2715210..2719315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score346.3
Seed ortholog evalue1e-92
Seed eggNOG ortholog2880.D7FVA7
Model size1557
Hectar predicted targeting categorychloroplast
Exons5
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0545@1,KOG0549@2759
Ec32 ortholog descriptionSecreted FKBP domain protein
Ec32 orthologEc-14_000380.1
Cds size645
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18290.1prot_Ecto-sp6_S_contig9.18290.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2715284..2718477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350547.556914-UTR-Ecto-sp6_S_contig9:2715209..27152831682350547.556914-UTR-Ecto-sp6_S_contig9:2715209..2715283Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2715210..2715283 +
1682350547.6190846-UTR-Ecto-sp6_S_contig9:2718477..27193151682350547.6190846-UTR-Ecto-sp6_S_contig9:2718477..2719315Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2718478..2719315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350547.5689259-CDS-Ecto-sp6_S_contig9:2715283..27153621682350547.5689259-CDS-Ecto-sp6_S_contig9:2715283..2715362Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2715284..2715362 +
1682350547.57919-CDS-Ecto-sp6_S_contig9:2716716..27170221682350547.57919-CDS-Ecto-sp6_S_contig9:2716716..2717022Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2716717..2717022 +
1682350547.5895765-CDS-Ecto-sp6_S_contig9:2717404..27174991682350547.5895765-CDS-Ecto-sp6_S_contig9:2717404..2717499Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2717405..2717499 +
1682350547.5994341-CDS-Ecto-sp6_S_contig9:2717799..27178381682350547.5994341-CDS-Ecto-sp6_S_contig9:2717799..2717838Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2717800..2717838 +
1682350547.6093855-CDS-Ecto-sp6_S_contig9:2718351..27184771682350547.6093855-CDS-Ecto-sp6_S_contig9:2718351..2718477Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2718352..2718477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18290.1

>prot_Ecto-sp6_S_contig9.18290.1 ID=prot_Ecto-sp6_S_contig9.18290.1|Name=mRNA_Ecto-sp6_S_contig9.18290.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=215bp
MKRAIATLMGGLMASEAFVLPAAVSRGLAAAGSSSREVVSCSASTSSSSS
SQGGGQHSRVAFLNKAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTT
DSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGR
PFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPN
ATLYFDVELLAVQP*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:2715210..2719315+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18290.1 ID=mRNA_Ecto-sp6_S_contig9.18290.1|Name=mRNA_Ecto-sp6_S_contig9.18290.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4106bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2715210..2719315+ (Ectocarpus species6 EcLAC_371)
GCCCTCAGCCCAGCCTCCCTCAGCCGGTAGACCAGCACATCAGCACCCAC
CGCAACAAGGGCAAGGAAGGAACAATGAAGAGGGCTATTGCAACACTGAT
GGGAGGCCTCATGGCCTCAGAGGCTTTCGTCCTCCCAGCTGCAGTGAGCA
GAGGTGGGATGTGACGATGTGACACACGGAATACACGTGTTTTTCCCTGA
CAGACCCTACACCGCCAACGTGCACATGTTCGATGCCACCTGCTACGGCT
GTCCATATCCATTGCCGTATGCTGATCGGCACCTCCTGGTATCTCGGCCT
TGTTTCCTCCGCACCACACCTCTTCTCGGTGCATAGGCTCGTGCTCAACA
CATGAAACCTTTGGGTGAGGTACAAAAATGAATGATCTCCCGACACCCCT
TCTTGGTCTCTGGCTGTGCTGACTTTGTTGTGTTTGCCGTGAATCGGGAA
GATACCAAACCGCCCAGGGTCGATTCTCCAAGCTCAATCTTCCGAACGCC
GGAAGAGTTGGAAAGGAACTTTTGTGTACATAAATCTTCGTTATCCCATA
CTTTGTTTCATGACCACGTGTTGCGGAAGATACCACTTCCCTTGGATCGG
GGTTTAAAGCTCGACTACTCGATTACTCTGCAGCAAAATGGTCACGAGGC
TGAAAATGGCGGCGTTGGAACGATCTGGTCTTGAGCTTTCCGAAAACGTA
TCATTTGATCGCGGTATTCTTTTCGTCCGTGGAAAAATCGAACTCTGATA
AGTTGAGGGGGTGGTATCTTACACTTTTACCTCGTAGAATGGAGTATGCG
AACAACCTCGGGTACCCTGCGGCCTTTCCTGCCGAGGCGAAGGGCTCCGA
TCCGGGGGCCACGCAGAAGATTCTCTGCGGTAGATATCTTCAACGTTTGA
GGCGGGGGGCACAGTCGTACATCCATCACGTATCATGTACACTCGCGAAT
TCAAATCGTGATACGTGATCTTCACCAGCCAATCGGCACGAGGTTAGGAA
TCCAACTTTAATAACTACTCTGTGCACATTGAACTGCACCCTCCCAGAGA
TCTTGCCGCATCGCCTTTCGATGCCTTTCGTTGACCTTCAAATGAAATTC
GTACTGCGCCGTAAGAGTGCATGATTTGATGGTTCCACAGACCAACTACC
GGTACAGATGGAAGGCTCTTTCGATAAATGGCTGCAGCAACCACGGCCCC
TTGTTGTGTCTTGGTCGTGCCATCGTACGGTGCCCTCTTTGAGGCTGTGC
GCTCTCCACGTTTCCCGTATTCAGCGCGGATCCAATCTACAGGATGCGTT
TTCCTATCGCCCGAGAAAGGGCACTCTTCTTTCGCACTATGTGCCACGGC
ACCTCCAAAGACATAAGCACCAGATCAAAACAGCCGAACCGAGGCGGCCT
CTCCTGTCTCGCCGACCTCTTCTCGTCTTGCACACCACGGCACACTCCTT
TCGTTGATCGACCTTATTACGCTCACCCAACCCTTCACCCATCATCCGTT
GCCGCAGGTCTCGCCGCAGCCGGGTCTTCCAGCCGCGAGGTCGTGAGTTG
CTCTGCCTCAACTTCATCTTCCTCTTCCTCCCAGGGAGGCGGGCAGCACA
GCCGCGTTGCTTTCCTCAACAAGGCTGGGCTCGCGGCGGCCACGACTGTT
GCGGCGGTGACAGGCTCTCCGCTGCTAGCTCGTGCCGAGGAGGAGGATGA
GGTGAAGGTGGGAGAGGAGGTAACCACCGACAGCGGTCTCAAGTACACCG
TCACGGTTGCTGGAAAGGGCTCCAAGCCCAGCCCTGGAAACATGGTCAAG
GCCCACTACACCGGTAAGCGTGTAATGTAGCCGTGCAAGTCGTATCGTTA
GGAGCTTCCTTTTAGCGTGCATTATTACAGTAGTGGTAAACAGTCCGAAT
TTGCAGAACTGTGTGTTCCGAATTGGTCTAACGGGATCGGTGATACCGCC
GAGGTACTGCTGCTGTCGACCGTCACACCTAACGCGATCCCGCTAACATC
ACTTTGAGATTTTTGTATGCTTGAGAAGGCCTGCAGAGCCTGGTTTCGTT
TCGTTTCGGCGTGATGCAAGACCAGAAAAAACCGCGAGCAGGATTAAAAG
ACATGATGACTAGAAAAGTGTAGGCGTGTGTGCATTGTCATTTTGTTGCC
CTTTCGCCTGACACCGAGGAGTACGTGTATTGTCTTCCGAACCAGGATGG
CTGAATGCCTTCGGCGATGAGGATGGCGCGAAGTTCGACTCATCCCGTGA
CAGGGGGAGACCGTTCTCGTTCAAAGTGGGAACGGGACAGGTGAGGCTAT
TGGGCCGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTGAGAGAGAGAGAGC
TAGACGACGTGAGGCCGACCAGGTGCTCCATGAATCATTTGGCGGTGTCT
TGGGTATGCACCGTACACATCTAGTCTGTTGCTGTGTTGGTGTTGGGTAG
CTGTTCAGGAAATGCGTTGTTGTTGATGTTGCTGTCGTCGGTACATACTA
TAGCTGCACGACAACCCGCAGAGATATGCGCTACATCCGAAACGGAGAAA
CGTGCGCCAATGTCTCGTGCTTTTGTGTTGGACAAATCAGGTGATCAAGG
CCTGGGACGAGGCGATGCTCGACATGAGGGTAAGAGAACATTCGAAGAGA
CGCACGAATATCCTGGATACATGTGCTGTTGGTTGTGTACGATACAAGAC
TTTCCATGGGAGCCAATCAACTGCAGTTGCGGGAGTTTGACCATTCTTCT
TGGAGGCGAGGCGATACTAGAATAGTGCGCAGCAGACATGAAAATTGTCG
AAGATGCTTTTCGAAGCATGCCCGTTGTATAGTGTAGGTGGAAACGCCAG
ATACCATCACCCTTGGTGCATCCATCCAACTCTCGTCATCGACCGCGATC
AGGGTATCTCGCAAACGGATCGCCGTTAAGCAGTACGTCGTCTTCCAGCC
CATTTCTGCTAGGTCAATCACACATTAGAGCTGTTGTCTGGTTGTGAGCA
GATAGCCAGCGACACTACATACTGCCGTGTGTCTCTGCTCCTTGCTGCCG
ACGCGTGCCGACCTATGTGTTGGCGTTAACAATTGGACCCCACGCTGCTG
TGTCGTGTCCTGTCTGGTCGTGTCACGGACGTGGTTCCGCAGATCGGGGA
ACGCCGCCAGATCACGGTGCCGCCTCAGCTGGGGTACGGCAGCCGCGGCG
CAGGAGGCGTGATTCCCCCCAACGCCACACTCTACTTCGATGTCGAGCTC
CTCGCCGTGCAGCCCTAGGATATCGATATTAGCGTTATAGCCAAGAAATA
CGACTAGATGTTAGGGGCATCTTTGTCCAAAGAAATGAGTTCTTGAAGCG
GAGAGTGGCGGGCAAGTAGGAGCACCGGGGCCGAGAACAATGATGTGTAG
AAGGAGAGAGGCCGTACGGTAGAAAGCGGCATCAGTGTTGTACGGGGATT
TTTCCGGAACCAAAGCAGTGAGACGACGCCCTCTAACGCGCACGCTGCGA
GTGACGGTACCTTACTGCTGTACAGACGTGGCGATCGCTCCGGAGCAAAA
CTACCCCTTCTTGATCTTCTGTGAGGTCCTCTCCTTTTTGACTATCTTAG
GCTCTCCACTCCCTTCTCAAGAGATGATGGGCGCATGTGCGGCCAACTGT
GCCTTAGGGAAATGGGCATGCAGCACTGTACCAAATAAGGTGTTCTTGTT
TTCCGTGGAGGATAGGGCGAGGCGGCATTCTCTAGCTAGAAACACGGCAG
TACTGTAGAACATGTTGGGCACCGGAAGTAACATCCCGTCTTGCGGGAGA
AACGAGGGCATGAACCGCGACGATGCGACAACGTTAGGTAGGGGATAGAT
TGGGGTGTTCAGTTCATTCTTTTTATAGACCTAGATTCATTCATAGTTTG
CAGGCCATCGTCCACCGTCATTTCCGTCTCAACGTTGGACTGGAGCTCGG
TGGGAACATGACTGCTGCTTTCGACAGCAACAAGTTATCGCGTGCAACGA
AAATGCTGCTAAATTTGGTCGTTCCCAACATTTGGCGTGTTGTCTTGCGC
ATAAACCGGGGTCGGTGACACCGGAGGAGGTAGGCCTATTTCACTTGGCA
CAGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2715210..2719315+

>mRNA_Ecto-sp6_S_contig9.18290.1 ID=mRNA_Ecto-sp6_S_contig9.18290.1|Name=mRNA_Ecto-sp6_S_contig9.18290.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2715210..2719315+ (Ectocarpus species6 EcLAC_371)
ATGAAGAGGGCTATTGCAACACTGATGGGAGGCCTCATGGCCTCAGAGGC
TTTCGTCCTCCCAGCTGCAGTGAGCAGAGGTCTCGCCGCAGCCGGGTCTT
CCAGCCGCGAGGTCGTGAGTTGCTCTGCCTCAACTTCATCTTCCTCTTCC
TCCCAGGGAGGCGGGCAGCACAGCCGCGTTGCTTTCCTCAACAAGGCTGG
GCTCGCGGCGGCCACGACTGTTGCGGCGGTGACAGGCTCTCCGCTGCTAG
CTCGTGCCGAGGAGGAGGATGAGGTGAAGGTGGGAGAGGAGGTAACCACC
GACAGCGGTCTCAAGTACACCGTCACGGTTGCTGGAAAGGGCTCCAAGCC
CAGCCCTGGAAACATGGTCAAGGCCCACTACACCGGATGGCTGAATGCCT
TCGGCGATGAGGATGGCGCGAAGTTCGACTCATCCCGTGACAGGGGGAGA
CCGTTCTCGTTCAAAGTGGGAACGGGACAGGTGATCAAGGCCTGGGACGA
GGCGATGCTCGACATGAGGATCGGGGAACGCCGCCAGATCACGGTGCCGC
CTCAGCTGGGGTACGGCAGCCGCGGCGCAGGAGGCGTGATTCCCCCCAAC
GCCACACTCTACTTCGATGTCGAGCTCCTCGCCGTGCAGCCCTAG
back to top