mRNA_Ecto-sp6_S_contig9.18283.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18283.1
Unique NamemRNA_Ecto-sp6_S_contig9.18283.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18283.1 vs. uniprot
Match: D7FVC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC0_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 8.270e-37
Identity = 70/82 (85.37%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 MIQGGMWCMCILVETLDVQG-VEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRRQPTLPLHKRQVKALINAECCRGPRRA 243
            M QGGM CMCILVETLDV   VEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRR+     HKRQVKA INAECCRGPRRA
Sbjct:    1 MTQGGMRCMCILVETLDVVACVEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRRR-----HKRQVKASINAECCRGPRRA 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVC0_ECTSI8.270e-3785.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2642714..2643964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size249
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350546.6326535-CDS-Ecto-sp6_S_contig9:2642713..26427791682350546.6326535-CDS-Ecto-sp6_S_contig9:2642713..2642779Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2642714..2642779 -
1682350546.6476452-CDS-Ecto-sp6_S_contig9:2643375..26434991682350546.6476452-CDS-Ecto-sp6_S_contig9:2643375..2643499Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2643376..2643499 -
1682350546.6621125-CDS-Ecto-sp6_S_contig9:2643905..26439641682350546.6621125-CDS-Ecto-sp6_S_contig9:2643905..2643964Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2643906..2643964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18283.1prot_Ecto-sp6_S_contig9.18283.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2642714..2643964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18283.1

>prot_Ecto-sp6_S_contig9.18283.1 ID=prot_Ecto-sp6_S_contig9.18283.1|Name=mRNA_Ecto-sp6_S_contig9.18283.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=83bp
MIQGGMWCMCILVETLDVQGVEANRQLGARGRRTAGALGRSSQLAAVPLA
PPPRRQPTLPLHKRQVKALINAECCRGPRRAT*
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mRNA from alignment at Ecto-sp6_S_contig9:2642714..2643964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18283.1 ID=mRNA_Ecto-sp6_S_contig9.18283.1|Name=mRNA_Ecto-sp6_S_contig9.18283.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1251bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2642714..2643964- (Ectocarpus species6 EcLAC_371)
ATGATCCAGGGGGGCATGTGGTGCATGTGCATCCTGGTGGAGACATTGGA
CGTGCAGGGGTCGCCTGGTGAGAGTTATTGAAGTGTTTCGTTTTTATCGA
TCGGGCCAAGCAAGATTTCAAGGTATTCTTGTGGTGATCCGACCATTTAG
AGTACTCCTTCACTCAACATCTCAATTTATCTCCTTTGACCTTTCCACAG
AGACAAGTTCACGAAGGAGCTCCGCGTTGTCTCCCAACATTCATTCTGCC
CGCGTGCCCTTATTTCATTCCGAGAAGTGTCCAACAATCCATCCACGATA
TTTTCTAACAGCAAGCACGTTTCTTGGCTGCGTAGTGCCGGGAAACAAGC
ACCTCGAAATGAGTGAGCGTACGATATGATTCGGAGGACTGCGGCATTTT
TGCTTCCATGCTGCATTCGCGTGCAGTTGACCTTGTCTGTTGACGAAATC
ATGTGGTGTGGGCAGCGTCGAGGCAAACCGCCAGCTTGGGGCCCGAGGCC
GTCGGACGGCGGGCGCGCTGGGACGGTCATCGCAGCTGGCTGCCGTGCCA
CTGGCACCACCACCGCGGCGGCAGCCGACTCTACCGCTAGTCACATCTGC
GCCCGCACTCTCGTCGCTGGCCACCGCACCCAACTCGGCGAGGGAGAGAC
AGAGACGAGTAGAGGGTGCAGCGCAGGAAGACAGCGGCAGGATCCGCCAG
GGACAGGCCGCGTCGCCGGCTCTTTCTTCTTCGAGCGGCGGCGTTCGTGG
TCGCGGTGGCCGGAACACCGACGACTCTCTGCTGACCCTCGCGCGGGCCG
CCAGCACCACAGCTACTGCGCGCCCCGCCCGCCGTACCAGGAGCCGTACC
ACCGCCATCGCCAACGCCGCTAGTGCCGCTACCGCTACCCTCTGCGCAAG
CTCCATCATCAGCAACAGCACCAGCACCACTGCCGATAATAATACCGCTG
GTACCCCCACTGCTAGCACCACCACCAGTGGCCGCGCCACCATCACTGAT
GTTGCAGGCCGCCCCGGCCGTACCACCCCTGCGACCGCCACCACCACCGC
TAGTACCTCTACCACCGCTACCTCTAGCACGAGCGATTGGACGAGCGCCA
GCGCCAGCGCCAGCGACACCACCACCGCCGCTGGTAGTACCGCTACCTCA
ACCAACCTCCTTTGGCGTGGTGAGGCTACCAAGAGCACAAGCGCCAGGTC
AAAGCGTTGATCAACGCGGAGTGCTGCCGAGGACCACGACGGGCAACGTA
G
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2642714..2643964-

>mRNA_Ecto-sp6_S_contig9.18283.1 ID=mRNA_Ecto-sp6_S_contig9.18283.1|Name=mRNA_Ecto-sp6_S_contig9.18283.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2642714..2643964- (Ectocarpus species6 EcLAC_371)
ATGATCCAGGGGGGCATGTGGTGCATGTGCATCCTGGTGGAGACATTGGA
CGTGCAGGGCGTCGAGGCAAACCGCCAGCTTGGGGCCCGAGGCCGTCGGA
CGGCGGGCGCGCTGGGACGGTCATCGCAGCTGGCTGCCGTGCCACTGGCA
CCACCACCGCGGCGGCAGCCGACTCTACCGCTACACAAGCGCCAGGTCAA
AGCGTTGATCAACGCGGAGTGCTGCCGAGGACCACGACGGGCAACGTAG
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