mRNA_Ecto-sp6_S_contig9.18279.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18279.1
Unique NamemRNA_Ecto-sp6_S_contig9.18279.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: D7FVB6_ECTSI (Similar to histidine triad protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB6_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 5.750e-126
Identity = 181/185 (97.84%), Postives = 183/185 (98.92%), Query Frame = 3 
Query:   90 PFLTLLSSLVFLLGLFLFLFVCRRNVICHETPSIAVVEQNVFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQTTQLTL 644
            P  TLLSS+VFLLGLFLFLFVCRRNVICHETPSIAVVEQNVFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVR+PSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQTTQLTL
Sbjct:   31 PSSTLLSSIVFLLGLFLFLFVCRRNVICHETPSIAVVEQNVFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRDPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQTTQLTL 215
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A835YP06_9STRA (HIT-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP06_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.960e-43
Identity = 76/147 (51.70%), Postives = 100/147 (68.03%), Query Frame = 3 
Query:  204 QNVFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQTTQLTL 644
            QN FARI RKE+PA++V+EDD  +AF D+H  +  H LIVPK GAVR+ S LN +HVD+LE M+AV +QL++E A LT NQQ  QA LGFH+ P   VPHLHMH IAP   +    R  F   S W+ +A+ +L RL+ +Q   +T+
Sbjct:   29 QNPFARIARKEDPAEVVFEDDQFIAFWDSHKASQTHFLIVPKDGAVRDASLLNAKHVDMLEAMIAVARQLIREEARLTNNQQRTQAILGFHLPPVAKVPHLHMHCIAPRVKMGWRARLLFWPDSPWFVTADTLLRRLQEKQRAHITI 175
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A069DNX0_9HEMI (HIT domain-containing protein n=2 Tax=Triatominae TaxID=70999 RepID=A0A069DNX0_9HEMI)

HSP 1 Score: 108 bits (271), Expect = 1.200e-26
Identity = 53/145 (36.55%), Postives = 87/145 (60.00%), Query Frame = 3 
Query:  210 VFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQTTQLTL 644
            VF  I+R+ +   I +ED+ V+ F D  P +  H L+VPK   + +   LN  H++LL+HM++VGK +L+++     N +T++   GFH  P+  VPHLH+HAIAP+  +N   R  F   S+W+ + E ++ RL+  +T +  L
Sbjct:    9 VFCDIIRENDKNKITFEDELVVIFPDIKPASSSHYLVVPKIH-ILDVKQLNPSHLNLLQHMISVGKNVLEDK-----NCETSEMRFGFHWPPFRTVPHLHLHAIAPISQMNFLSRMIFKENSWWFVTPEYVVSRLEGMKTDKQCL 147
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A2C9K0U8_BIOGL (HIT domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K0U8_BIOGL)

HSP 1 Score: 108 bits (271), Expect = 2.940e-26
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 3 
Query:  180 TPSIAVVEQNVFARIVRKEEP-ADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQTT 632
            TP+     + +F RI  K+EP + ++Y+ D ++ FKD  P +  H L++PKS  VR+P HLN+  V+L+E +VA GK+ L +  G   +     A LGFH  P+  + HLH+H I+P++++       F   S+W+ S + +L RL++   T
Sbjct:   35 TPNDTQANKCLFCRIAHKQEPKSQLLYDKDDIVIFKDIRPASDHHYLVIPKSH-VRDPKHLNLNDVELVERLVATGKEFLSQMGGSVDD-----ARLGFHWPPFNSISHLHLHVISPVKNMGFISGLVFKPNSYWFVSPDWVLERLRNMNKT 180
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A6H5L7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.280e-24
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  426 AGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFW 581
            A     +QTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFW
Sbjct:   54 ASTITERQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFW 105
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A2R7W3V6_ONCFA (HIT domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7W3V6_ONCFA)

HSP 1 Score: 103 bits (258), Expect = 1.460e-24
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 3 
Query:  198 VEQNVFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQ 623
            +++ VF  IV + +   IV++DD V+AF D  P +  H L+V +S  + NP  L+  H  L+EHM+ VGK L+KE      + +   +  GFH  P+  + HLH+HAI P+  +N   R  F   S+W+ + E +L RL+SQ
Sbjct:   24 IQKCVFCGIVNQNDSNKIVFQDDDVVAFPDIKPASERHFLVVSRSH-IPNPKVLDSTHKSLVEHMIQVGKDLVKEH-----DPELTNSRFGFHWPPFNTISHLHLHAINPVDKMNFMSRMIFKPESYWFVTPEYVLSRLESQ 159
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A8J1UTQ0_OWEFU (Ofus.G21791 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UTQ0_OWEFU)

HSP 1 Score: 102 bits (253), Expect = 5.240e-24
Identity = 53/144 (36.81%), Postives = 87/144 (60.42%), Query Frame = 3 
Query:  198 VEQNVFARIVR-KEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQ 626
            +++ +F +I + KEE   ++Y+DD ++ FKD  P A  H LI      +++   L  +HV+L+E ++AVGKQ+L+E+ G      TA A +GFH  P T + HLH+H IAP   +N + R  F + S+W+ S E ++ RL + +
Sbjct:    1 MDKCIFCKIAQGKEEKTTLLYQDDELVVFKDHRPAASHHYLITSVEH-IKDVRELTGKHVELVERLIAVGKQVLEEQGG-----NTADARIGFHWPPVTTIQHLHLHVIAPEAEMNWFWRLVFKLNSYWFVSGEYMIKRLTAMR 138
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: R4G313_RHOPR (HIT domain-containing protein n=2 Tax=Rhodnius TaxID=13248 RepID=R4G313_RHOPR)

HSP 1 Score: 100 bits (250), Expect = 1.640e-23
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = 3 
Query:  213 FARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQT 629
            F  I+R+     I +ED+ V+ F D  P +  H L+VPK+  + +   L+  H+DLL+HM+++GK +L+++       + ++   GFH  P+  VPHLH+HAIAP+  +N   R  F   S+W+ S E ++ RL+  ++
Sbjct:   10 FCVIIRENSGNKITFEDEHVVVFPDIKPASSSHYLVVPKNH-ILDVKQLDPSHLDLLQHMMSIGKNVLEDK-----QCEASEMRFGFHWPPFRTVPHLHLHAIAPVSQMNFLSRMMFKENSWWFVSPEYVVSRLEGMKS 142
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: UPI00145877D4 (histidine triad nucleotide-binding protein 3-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145877D4)

HSP 1 Score: 98.6 bits (244), Expect = 1.280e-22
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 3 
Query:  210 VFARIVRKEEPA-DIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKSQQT 629
            +F +I R ++ A DI+YE++ ++ FKD  P    H L+VPK   ++NP  L+  H+ L++ +V VG+  LK+++         +A  GFH  P+T V HLH+H ++P   +    R  F   SFW+ +AE ++ RLK   T
Sbjct:   11 IFCKIARGQDKATDILYENEELVIFKDIKPATRHHYLVVPKHH-IKNPKSLDNSHLSLVDRLVEVGRDFLKQQSA-----DVDEARFGFHWPPFTSVSHLHLHVLSPTSDMGFIARCIFRPNSFWFVTAEWLISRLKGMDT 145
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Match: A0A672MPU2_SINGR (Histidine triad nucleotide binding protein 3 n=5 Tax=Cyprinoidei TaxID=30727 RepID=A0A672MPU2_SINGR)

HSP 1 Score: 98.2 bits (243), Expect = 2.550e-22
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 3 
Query:  180 TPSIAVVEQN--------VFARIVRKEEPADIVYEDDTVMAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKERAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVGSFWYQSAEKILGRLKS 620
            TP I    Q         +F +IV+ E   ++++ D+TV  F+D HP AP H L+VP S  V N   L  +HV L+E +V +GK++L++      N        GFH  P+  V HLH+H +AP+  +    R  + + S+W+ +A+++L RL S
Sbjct:    9 TPEIGTTNQTDDGYDQKCIFCKIVKGEMGTELLHNDETVSCFRDIHPGAPHHYLVVP-SKHVGNCKSLGKEHVPLVEQLVEMGKEVLQKNDVTDLND----VRFGFHWPPFCSVTHLHLHVLAPVSQMGFMSRLIYRLNSYWFVTADQLLQRLNS 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB6_ECTSI5.750e-12697.84Similar to histidine triad protein 4 n=1 Tax=Ectoc... [more]
A0A835YP06_9STRA1.960e-4351.70HIT-like domain-containing protein n=1 Tax=Tribone... [more]
A0A069DNX0_9HEMI1.200e-2636.55HIT domain-containing protein n=2 Tax=Triatominae ... [more]
A0A2C9K0U8_BIOGL2.940e-2635.53HIT domain-containing protein n=1 Tax=Biomphalaria... [more]
A0A6H5L7B4_9PHAE1.280e-2488.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R7W3V6_ONCFA1.460e-2437.32HIT domain-containing protein n=1 Tax=Oncopeltus f... [more]
A0A8J1UTQ0_OWEFU5.240e-2436.81Ofus.G21791 protein n=1 Tax=Owenia fusiformis TaxI... [more]
R4G313_RHOPR1.640e-2334.53HIT domain-containing protein n=2 Tax=Rhodnius Tax... [more]
UPI00145877D41.280e-2235.46histidine triad nucleotide-binding protein 3-like ... [more]
A0A672MPU2_SINGR2.550e-2234.19Histidine triad nucleotide binding protein 3 n=5 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2610504..2614002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score257.7
Seed ortholog evalue2.8e-66
Seed eggNOG ortholog2880.D7FVB6
Preferred nameHINT3
Model size647
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.nucleoside phosphate binding
EggNOG OGsCOG0537@1,KOG4359@2759
Ec32 ortholog descriptionHistidine triad (HIT) protein
Ec32 orthologEc-14_000500.1
Cds size375
COG Functional cat.FG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350546.1385636-UTR-Ecto-sp6_S_contig9:2610503..26107751682350546.1385636-UTR-Ecto-sp6_S_contig9:2610503..2610775Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2610504..2610775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350546.1480994-CDS-Ecto-sp6_S_contig9:2610775..26108941682350546.1480994-CDS-Ecto-sp6_S_contig9:2610775..2610894Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2610776..2610894 +
1682350546.1559403-CDS-Ecto-sp6_S_contig9:2612333..26123911682350546.1559403-CDS-Ecto-sp6_S_contig9:2612333..2612391Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2612334..2612391 +
1682350546.1636147-CDS-Ecto-sp6_S_contig9:2613407..26135381682350546.1636147-CDS-Ecto-sp6_S_contig9:2613407..2613538Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2613408..2613538 +
1682350546.1748102-CDS-Ecto-sp6_S_contig9:2613935..26140021682350546.1748102-CDS-Ecto-sp6_S_contig9:2613935..2614002Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2613936..2614002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18279.1prot_Ecto-sp6_S_contig9.18279.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2610776..2614002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18279.1

>prot_Ecto-sp6_S_contig9.18279.1 ID=prot_Ecto-sp6_S_contig9.18279.1|Name=mRNA_Ecto-sp6_S_contig9.18279.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=125bp
MAFKDAHPVAPCHLLIVPKSGAVRNPSHLNVQHVDLLEHMVAVGKQLLKE
RAGLTPNQQTAQASLGFHMAPWTLVPHLHMHAIAPLRSLNIWQRFHFLVG
SFWYQSAEKILGRLKSQQTTQLTL*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:2610504..2614002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18279.1 ID=mRNA_Ecto-sp6_S_contig9.18279.1|Name=mRNA_Ecto-sp6_S_contig9.18279.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3499bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2610504..2614002+ (Ectocarpus species6 EcLAC_371)
ATGAGGGTTTGGGCCCACTCCCCCCGGGGTAAGCCTTGCTTGTACTTTTG
GACTTCGGAATCACCGCTCCAATCACCAGGGAAGTACGGCCCTTCCTCAC
TCTTCTCTCCTCCCTCGTCTTTCTGCTCGGTTTGTTCTTGTTCCTGTTCG
TTTGCCGCCGAAATGTCATCTGTCATGAAACGCCATCAATCGCCGTGGTC
GAGCAGAACGTTTTTGCGCGGATCGTCCGGAAAGAAGAGCCAGCGGACAT
CGTCTACGAGGATGACACGGTTATGGCTTTCAAGGACGCGCACCCGGTTG
CCCCATGCCATCTCTTGATCGTGCCAAAAAGCGGGGCCGTCCGCAACCCG
AGCCACCTGAACGTTCAACACGTCGACCTTTTGGAGCACATGTGAGCTTG
TACATTTTTTTGCAGTACCGTATGGCTGTTTCGTGGTACCATGAATCGTA
CGATTCCGGTACGTCAAGAATTGAAGTCCTGCTTTCCTTCACGGTATAGT
AGCAGCATTGATGGATTAGTCAATAGAGTAGTCTAGGCCATCTAGCCCCG
ACGAAAGAATGACCTTTGCTGCAAAGACAGCCTGCTTTTGGATTCGCGTT
GGCGAGACAAAAGTGACGCCAAACGAAGGTCTAGAAATCGTTGACATTGA
AAGGATGCAGATCGGTCGACACCGAGTTTGTCGCGTTCTCTCTCTAGTCG
TGATTGATTGCGCGTGCATGTCGGAGAACTGTCTGGGTGATTGTGCGAGC
ATACAGCTAACAAACAGCAGTCAGTGCAATACAGCGAACATCCTCCTTAT
CGCAGAATTGTGTACTCTCGATGTAGAGAGGGTTCGTCTTGCGGACGAAA
AAACATCCTTTACTGTTCGTCGTCTACGCGCTTAATCGTTCCGTCTGTCC
ATTTGACTCCTGGTGTATTGTTGCGAAGGCGTCATACCTGAAGGTACGCG
TGATGATAGCAGCAGGTTGACGTTGTTGGTTTGTCGATCTGGATGAGGTG
TAGTCGGTGGCATACCCGAAGGTACGCGTGATGAAAGCACCTTTAGGTAT
GCCACCGACGACCTCATCCAGATCGACAAACCAACAACGTAAACCTGCTG
CTATCATCACGCGTACCTTCAGGTATGACGCCTTCGCAACAATACGCCAG
GAGTCAAATGCACAGACGGAACGAATTAGCGCGTAGGCGACGAACAGTCA
AGGATGGTTTTTCGTCCGCAAGACGAACCCTCTCTACATCGAGAGTACGC
AATTCTGCGATACGGAGGATGTTCGACCTACCTCCAACACGACCGACGTT
TACCGACGATGTCAAAGGTGATCCCCGTGTCAATGTGTGCTTTGCAACTC
AATTTTCGCCCTCACGCCACCTACAATATAGTATGTGGTGCGTGAAAGTG
TGAAATCGAAATCATAATCGCGTGCTTTCCTTTCGCCTTTCGTCTTTCGT
CTCGCATTCGCAACTGCTACTCCTGTACGTCAGCTCCTTTGTGGTCGCCA
TTTATCACGTTGTGCCCCAGTCAATGCAATGTCTAAACATTCGACTTGAT
GGTAGACTAGGGGAAGGAAGGCGGGGAGACAAAACAAAACAAACTAAGAG
CTACTAGATAAATATCTGGCTCCCGTGTGACCCACCCCGGCTGATGAGTC
CAGAAAACATGCCAAAAATGTGGTTAAAACACTGATTTACCAGAAATAAT
GGACGACACGCACAAAACGCTTTGCGGCTTTTTTACCTCTTTCAATCGGA
AGGGAACCGAAACAAACTATCATATGCATCCGCCCCGCTCCTCTGTTGCA
TGTTGCGTGTTGCGTGATTTTTTCGATCAGGGTGGCGGTCGGCAAGCAGC
TCTTGAAAGAGAGAGCTGGGCTCACGCCGAACCAGCAGGTGAATGAAATA
ATGTGTTGATGTGTTGAGGATAGACCACCGACACAGCGGCTGCGACACTC
GTGCTCTGCCCGTCCTGCTGTAACTTGCGCCGCTCGGCGTTCTTCAGTAG
ATTGTAGATACGCGATTTAACAGTACAATCGCTTTACGGGTTGGCGATCT
TTTTGTCTTTCCGTGAGCGTTTCTCACACGATGCGGTACAGTGCAGTACC
ATACGGTACACTAGAGACCAACTCTCTTTCTCTCTCCGCCATTCTGGGTA
GAGAGAACAGAACGGTTTTTAATGTGAAGACAACAAACAACAACAACAAC
AACAACAACACCCTCACATCTTGGTATGATCGAAACAGCCATCTGTCCTC
CGGGTGGGAGAATCAGGGCACCTTAGTATAGTTTTAGTGTGCCACACAAA
CAATAGAAACAATGCCGTGAAGAGCGTTAGAAGAGATGAGGGCCACGCGC
CACCACACCAATAATTTGGGCTATTACTGTGATGAGCGAAGTATGTTTCG
CTGTCTAAAGCAGTAATCTGCCGGGGTAAACACACACAGATAGATAGATA
GATAGATAGATAGATAGATAGAGATGCAGCGCGGTAGGAGACGGCGCGGC
GCTGTGCGTCACCTCACCTGACCTACGGTACTGGTCTAAGGCATGTAGGC
ATGCATGTACCCTTGAGCTGCCGTCGAATTGATTCTCGAAATGGTTGGTG
GGGGACAAACAGCCGTCAGTCGTAATTGTACAGGGTACGTTTACGCCACA
CTTTACACTACACGACCCATGGAAGATCGCGGTGCAAGCACATGTTGTAC
ATGTAGGTGGGCTGGTTGCCTGTCTCGTCGTGGTGAAGAAATTCGCTTGT
AGGTGCATCGATCGAACCAGTTTGCCGGCGTTCCTCGGGGCAAAATATAA
ATATATGCATACGCCTGTCCCAAGTCGCTCAGTGGTTGCGGCTTCTGAAG
TTTGACGTTGCCTGGGTGTCCATGCCTTCTGCATCGACCATCACTGAACC
GCAGACTGCCCAGGCGTCTCTAGGGTTCCACATGGCGCCATGGACACTGG
TGCCGCACCTACACATGCATGCTATCGCGCCCCTGAGAAGTCTCAACATC
TGGCAACGATTTCATTTCCTCGTCGGGTCCTTCTGGTGAGATACATGCAT
CAGATATGAGATATGAGATACTTGTATGAGGCCAGGCAATGAGTGTCTTG
CTTGGCCCTGCCCTGGCGTGGTGATGCATATCGAGATATTTCCCCCGGCA
TATAGCAGCAGCGGACGTTGGCGTGTCATGTTGACGTGCGCTCTGCTTGA
ATCACACTTTGTATTATCACCAACACAAAATGGGGTTCTAATTTCGGGTG
TGGTCACCCCAAGCCTATCGATAGATTGCATGGACTGGCGTTGTTTCGTC
TGACAGTAAGTCATGGCGTGGCGCTGTCGTGGTGGGACTTAGAGGTAGAA
GAAACGGAAAGTTCCGCAGACGGTCTCTATTCGTCTACCATACACGCCAC
ATCTCCACGTGCTCTTTGTTCGAAACGAGCAGGTATCAGTCGGCAGAAAA
AATCCTGGGTCGTCTCAAGAGCCAGCAGACCACCCAGCTTACCCTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2610504..2614002+

>mRNA_Ecto-sp6_S_contig9.18279.1 ID=mRNA_Ecto-sp6_S_contig9.18279.1|Name=mRNA_Ecto-sp6_S_contig9.18279.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2610504..2614002+ (Ectocarpus species6 EcLAC_371)
ATGGCTTTCAAGGACGCGCACCCGGTTGCCCCATGCCATCTCTTGATCGT
GCCAAAAAGCGGGGCCGTCCGCAACCCGAGCCACCTGAACGTTCAACACG
TCGACCTTTTGGAGCACATGGTGGCGGTCGGCAAGCAGCTCTTGAAAGAG
AGAGCTGGGCTCACGCCGAACCAGCAGACTGCCCAGGCGTCTCTAGGGTT
CCACATGGCGCCATGGACACTGGTGCCGCACCTACACATGCATGCTATCG
CGCCCCTGAGAAGTCTCAACATCTGGCAACGATTTCATTTCCTCGTCGGG
TCCTTCTGGTATCAGTCGGCAGAAAAAATCCTGGGTCGTCTCAAGAGCCA
GCAGACCACCCAGCTTACCCTGTGA
back to top