mRNA_Ecto-sp6_S_contig9.18278.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18278.1
Unique NamemRNA_Ecto-sp6_S_contig9.18278.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2603910..2608661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1947
Hectar predicted targeting categorymitochondrion
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000495.1
Cds size1947
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18278.1prot_Ecto-sp6_S_contig9.18278.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2603910..2608661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350546.0655942-CDS-Ecto-sp6_S_contig9:2603909..26048721682350546.0655942-CDS-Ecto-sp6_S_contig9:2603909..2604872Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2603910..2604872 -
1682350546.0740159-CDS-Ecto-sp6_S_contig9:2605176..26054111682350546.0740159-CDS-Ecto-sp6_S_contig9:2605176..2605411Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2605177..2605411 -
1682350546.081814-CDS-Ecto-sp6_S_contig9:2605597..26057921682350546.081814-CDS-Ecto-sp6_S_contig9:2605597..2605792Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2605598..2605792 -
1682350546.0894494-CDS-Ecto-sp6_S_contig9:2606235..26064241682350546.0894494-CDS-Ecto-sp6_S_contig9:2606235..2606424Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2606236..2606424 -
1682350546.097241-CDS-Ecto-sp6_S_contig9:2606751..26069081682350546.097241-CDS-Ecto-sp6_S_contig9:2606751..2606908Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2606752..2606908 -
1682350546.1052392-CDS-Ecto-sp6_S_contig9:2607307..26074431682350546.1052392-CDS-Ecto-sp6_S_contig9:2607307..2607443Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2607308..2607443 -
1682350546.1133204-CDS-Ecto-sp6_S_contig9:2608589..26086611682350546.1133204-CDS-Ecto-sp6_S_contig9:2608589..2608661Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2608590..2608661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18278.1

>prot_Ecto-sp6_S_contig9.18278.1 ID=prot_Ecto-sp6_S_contig9.18278.1|Name=mRNA_Ecto-sp6_S_contig9.18278.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=649bp
MATRLRARPARRRGSARYPWSLQPVSRIALGHHPLEFVRRKAWTSAPVRF
GNGISAVTSLCLCDEASVGGPSLLISGDEDGGVSVQRVQTEREGGSEGSS
PSPPGWLGTPERTRLHSSCVNTIKILPDQRGYVCAGDDGALSAVATFETC
SEEDLRRATFALTGHSSFVTDCDTAESGHAILSSSTDGRMLLWDPVATNT
PVASVSVGRPVNSACFSAGDPYALLCAPELGTNCTRGHGNDDLVQIWDLR
SLRCFKDAIPAAVATAFGEDPPATTPHDASMQPPPPQSPQFWTTSTTRSS
TARTPAHVPPWLSMVLGSSVPSPATPLLRRPAWTGDSNDAESVASSTRGS
REQCSYETPSGKENDFPLRSSGGSTTSRISSASSSCSNSPWSGRRGGTEG
ASNPGFNPSPSSKDRGQQGPAGPTRQVLLPARDEPHARLSVSSLPASGCL
HEGNGKTWIPGGLKTWQASRRRVRTAGARICAGEACVACSNSAAASACSV
QVSSDGKGILVGSRNRTVTLFDTQSHEVVYRFGHPRLSRARPVLVESSPN
GGVGGWGRGRGGTGSGDVFAGTMEGELRSWRVGSQFPNRVFKKASHHQGF
EIYSVAISNSGCMFASSDSSGAVYVQSATSGRDAQDSSGADAKHSGGD*
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mRNA from alignment at Ecto-sp6_S_contig9:2603910..2608661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18278.1 ID=mRNA_Ecto-sp6_S_contig9.18278.1|Name=mRNA_Ecto-sp6_S_contig9.18278.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4752bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2603910..2608661- (Ectocarpus species6 EcLAC_371)
ATGGCAACAAGACTCCGGGCCAGGCCTGCCAGAAGACGTGGTTCGGCGAG
ATATCCATGGTCACTGCAGCCGGTATGTCTGCACCTGTACTAATACCTAC
TGGCGTAGGCCCCAATACTACAGGCCATTACGCCGCAGCATATAGTGACG
GTGTCGCTGTGAAAGTCGTTGCCTTCCGCTACACACAACAACCGCAGTTG
CACATTGCACAAATTTTTGCGGGGACTGTCCTTGCAGCAAGGATCATGCC
GCAGGCCTCCGGCCCAGAGCTGAGATACAGACCGCGGTCTTGTTGTGTAA
TCTGCAGGATGCTTCTGGTATGTCACATTCTACACTTGAAGATACATTAC
ACGCCCTGTCTTTGCTGCGAAACTTAGAAATGCCGAGACATTTCGAGGGA
AAGTTTTGCTGCTCAAGCCTCGTTTCGCAGCTCATCGAACCAATTTCCAA
GCGCCTGGTCCTGATAAGAAGAGGGTAGTAGGAAGAGAAATCGAGAGGGT
GCACAAAATCACTCTGCCCGGTCCTTCGCCGCCGTGCAGCATAGGCATTG
AGTAGGTACATGGGAGATGTGGCGCAATTTCCATTTTGGGTCCCCAATAC
CATATACGACACAAGATAACACACCCCCTGGACCGATTTTCAAAGCTTGA
TTACTCCACACGACGAAAAGGATGCAAAACGAAGCGATACGTTCTCGGAG
AGCTCTCGACCAGACGACTTCAACGCCGGTGTTTTCGACGCTTCGACTCT
CTCTGCTGTTAATAAATCGAGCATTGAAAATCGGTCCAGGGGGTGTGTTA
TCTTGTGACGTATACGGTACGGCGGACGCTCATCATGCGATAATTAATCT
GTAGATCTAGATACGGTAGGTTCTGTAGATTAGCATGAACAGACTTGAAA
GAAAACCCTTGCCGAAAACGAATCTACCTCCTTCGTTGTTGAGGAAAAAC
AAAGGATAAAGTGTTCAGTGCTGCGGTCGACATCGATAGGTTACCCTAAT
CAGGCCCAATGGTTTGAACGCGTAGAGACCGCCTCTCAGAGATCCACCTA
TAGCCGGAGCTGTTGAGAATTGACAGCTCATCCTTGTCGGGAAAGTGACC
TTTCAGGCTTCGTGCCACCTCGAGTTTTCTGATGAATCAAAACGAAGCAA
CGTTTCGGCACAAACAGTTGCATGTAGCGCCTTCTTGACCTCGTTGCGGT
CGAACTTTATCCGTGAAGGTGTCGCGAATCGCCCTCGGGCACCACCCGCT
GGAGTTTGTGAGGCGTAAAGCTTGGACGTCGGCTCCTGTGAGGTTCGGGA
ACGGAATATCAGCCGTCACAAGCCTGTGTCTCTGTGATGAAGCAAGTGTC
GGAGGTGAGGATGAACGGTTGAAGACCTACATGCCGCCATTTCGGTATTT
TCGAGAATCTTTGGTGACCAAAACTAAGTTTTTATTGTAGGGCTGTATGC
ACATAGTAGGCACAACATAAAAACGGGGCTGTTGCTTATCGGAATGCCTC
GTGTGCTCCTGTGGTGGTGGTATTGGCGGTGGTCGTTACAACTTCACTAA
CCGTGCAGCATCCTGAGGTTTCCTCGTGTCAACATTTTTTTCCAATGAAC
AGTCCTTCGAAGCATGCTCCCATCATCCCGCCAAGTTGTGGAACACAGCT
CGGCCCTACAGATCTGAGTGCTCGTAGCAGTGAACTGATTCCAACGTGCT
TAGACTAACCCCCGGTACACTAACTCTGGTTCTTCACAAACACCACCTCC
CAGGACCTTCTCTTCTAATCTCAGGAGACGAAGACGGCGGCGTATCTGTG
CAACGGGTGCAGACAGAAAGGGAAGGCGGTAGTGAAGGTTCGTCGCCATC
TCCACCAGGATGGTTGGGAACTCCAGAGCGGACTAGGCTGCACAGCTCTT
GTGTGAACACGTGAGAGCGATGTCGGCTACGGCGAAAGTTGTAGTTGAAT
TGCACGACCGGCCTCCTCCTACATCCTATGAACGTCTTGGCTCAAATTGG
TAGCGCCGTGTTGCTTGCATCAATAGCAATTTGGACGGGATGCTATCCAT
GAAACGACCCCGCCAACAACGTGCACACTGGAGGGACCAGTCTTACAGCA
CGTGCGTAAAGCACTCATGGCATGCTTGTATGCAACCATGTTACTTGGTA
TCAGTTGTCAACACCCTGAAAAGATCAACAGAAAGTTTGATACCAATAAA
AGTGATATCGGAAGCTGCTCCTTGCGTACCTTCGCAGAATCAAGATACTT
CCCGACCAGCGAGGCTACGTGTGCGCTGGAGACGATGGCGCCCTGAGCGC
TGTGGCTACGTTCGAGACTTGTTCGGAAGAGGATCTCCGAAGGGCTACCT
TCGCACTGACAGGGCACTCGAGCTTCGTCACGGATTGCGATACCGCTGAA
AGTGGACACGCAATACTCTCAAGCAGGTGTGACACCTCGGAAGATTTTGT
CGTTCTTTGAATCGTAGCCGTGATTTGCATGAGGCCTGAGCTGGAAACAA
GTAAAAGGCCAACGGTTGATTGTACAGTACAGTACATGTGTTTGTCTTTG
GTAGATGCTTCGTTTGGTAATCGGCCGACGATTTGTCCACCTAGGACGCA
CACACTGCTGTTGTTCATGAGTCTACGCTCTTGCGTTCATAAGGACCCGG
TTGTTTGCATGAAACCTCTATATAATGAAAATTACTGCTTGTTAAAGTGT
CACGGCTTCGCTATTTTAGGCCATGGACACTGCTCGGTCGGCACCCCTCA
CTGTAGAAATGTGCAATCGTAGCCGTTGCCAACTCTCCATAAAGCGTGCA
AGCACACACTAGCGATTGTAATCGTCTCAGCCTCTTCTGCGTCTCCCGCC
GCCCACACCCTTACGAAAGTACTGATGGACGAATGCTACTGTGGGATCCC
GTGGCCACGAACACTCCGGTGGCTAGCGTCTCGGTCGGCCGCCCGGTCAA
TAGCGCCTGCTTCTCTGCCGGAGATCCCTACGCGCTTCTTTGTGCTCCCG
AGCTCGGCACGAATTGCACAAGGGGACATGGAAACGACGACCTTGTTCAG
ATATGGGACCTAAGGTAAACAGAACAAGAAACCCACGCTCAGTGCAGTGT
ACGCATCTCGTTGGGTTTGTTCATAGAAGTCTCACCAAAATTGCCCCCAA
CACCTTCCTTCCCGTCTTCCGTTTCCTGCACGGCGGTGAGTGCCTCTCTC
TCTTTTCATTCATTGTTCGTGTTCCGCCTGCTTTACTTGCGGCTGTGTAG
GTCCTTGAGGTGTTTCAAAGACGCCATCCCCGCAGCTGTCGCAACGGCTT
TCGGTGAAGATCCACCTGCGACGACACCGCACGACGCTTCCATGCAGCCC
CCGCCCCCTCAGTCCCCGCAATTCTGGACGACTTCAACGACACGAAGCAG
TACAGCACGCACACCTGCCCACGTCCCTCCGTGGCTATCAATGGTTTTGG
GTTCTTCAGTTCCCTCGCCAGCGACGCCCCTCTTGGTAAGCGGTTCTTGC
CGAGGCACGGATTTACGTAAGATATGGGGGTACAACGGTGAATGGAAAGA
ACAACGGTGCAACTTGGAACTAAAGCGATGAAATGCTAAAGTACTTTTGC
GGCCGCGCTTCTCTATTCAGATCATTTTTTTGTTTTTTTGGTCCAGCGGT
GTTTTTTGCCTTGCCCTAGAAAGATTTTTATCCATGCATGCAAGAATGTG
CCGTGCACTTCGTTCCACTCTGTCTCATCCTCGTCCCCGCTGTCGTCGTC
CGCACTGCATGCTCTACGATGACGTTGCGGGCTTTTTAGAGGAGGCCTGC
ATGGACAGGCGATAGCAATGACGCGGAGTCCGTGGCCTCATCCACTAGAG
GCAGTCGCGAGCAGTGCAGCTATGAGACGCCTTCCGGGAAGGAGAACGAC
TTTCCCCTTCGCTCAAGCGGCGGCAGCACCACCAGTAGGATCAGCAGCGC
AAGCAGCAGTTGCAGCAACAGCCCCTGGAGCGGGAGAAGAGGAGGCACTG
AAGGTGCCTCGAACCCTGGTTTTAATCCCTCTCCTTCGTCGAAGGACAGA
GGGCAGCAGGGCCCCGCAGGGCCCACCCGCCAGGTGCTGTTGCCTGCGCG
GGACGAGCCTCATGCACGTCTTTCCGTGTCCTCTCTTCCAGCATCCGGTT
GCCTGCACGAAGGGAACGGGAAGACATGGATCCCTGGCGGCTTAAAGACA
TGGCAGGCGAGCAGGCGGCGAGTTCGCACAGCGGGGGCACGGATATGCGC
GGGAGAGGCCTGCGTTGCGTGCAGCAATAGTGCGGCTGCGAGCGCGTGTT
CAGTCCAGGTTTCGTCCGATGGGAAAGGTATTCTAGTGGGATCACGAAAT
CGCACTGTAACTCTCTTCGACACCCAATCTCACGAGGTCGTATACCGTTT
TGGCCACCCAAGGCTGTCTCGTGCCCGCCCAGTGCTTGTGGAAAGCTCTC
CGAATGGTGGGGTTGGGGGTTGGGGTAGAGGCAGGGGCGGGACCGGGAGT
GGGGATGTCTTCGCCGGAACCATGGAAGGGGAGCTTCGATCTTGGAGAGT
GGGTTCGCAATTTCCCAACCGTGTCTTCAAAAAGGCGAGCCACCACCAGG
GCTTCGAGATTTACTCTGTTGCCATAAGCAATAGCGGCTGTATGTTTGCC
TCATCCGACTCCAGCGGAGCGGTTTACGTACAGTCAGCCACGTCCGGGAG
AGACGCCCAGGACAGCAGTGGGGCGGATGCCAAACATTCAGGGGGAGACT
AG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2603910..2608661-

>mRNA_Ecto-sp6_S_contig9.18278.1 ID=mRNA_Ecto-sp6_S_contig9.18278.1|Name=mRNA_Ecto-sp6_S_contig9.18278.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1947bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2603910..2608661- (Ectocarpus species6 EcLAC_371)
ATGGCAACAAGACTCCGGGCCAGGCCTGCCAGAAGACGTGGTTCGGCGAG
ATATCCATGGTCACTGCAGCCGGTGTCGCGAATCGCCCTCGGGCACCACC
CGCTGGAGTTTGTGAGGCGTAAAGCTTGGACGTCGGCTCCTGTGAGGTTC
GGGAACGGAATATCAGCCGTCACAAGCCTGTGTCTCTGTGATGAAGCAAG
TGTCGGAGGACCTTCTCTTCTAATCTCAGGAGACGAAGACGGCGGCGTAT
CTGTGCAACGGGTGCAGACAGAAAGGGAAGGCGGTAGTGAAGGTTCGTCG
CCATCTCCACCAGGATGGTTGGGAACTCCAGAGCGGACTAGGCTGCACAG
CTCTTGTGTGAACACAATCAAGATACTTCCCGACCAGCGAGGCTACGTGT
GCGCTGGAGACGATGGCGCCCTGAGCGCTGTGGCTACGTTCGAGACTTGT
TCGGAAGAGGATCTCCGAAGGGCTACCTTCGCACTGACAGGGCACTCGAG
CTTCGTCACGGATTGCGATACCGCTGAAAGTGGACACGCAATACTCTCAA
GCAGTACTGATGGACGAATGCTACTGTGGGATCCCGTGGCCACGAACACT
CCGGTGGCTAGCGTCTCGGTCGGCCGCCCGGTCAATAGCGCCTGCTTCTC
TGCCGGAGATCCCTACGCGCTTCTTTGTGCTCCCGAGCTCGGCACGAATT
GCACAAGGGGACATGGAAACGACGACCTTGTTCAGATATGGGACCTAAGG
TCCTTGAGGTGTTTCAAAGACGCCATCCCCGCAGCTGTCGCAACGGCTTT
CGGTGAAGATCCACCTGCGACGACACCGCACGACGCTTCCATGCAGCCCC
CGCCCCCTCAGTCCCCGCAATTCTGGACGACTTCAACGACACGAAGCAGT
ACAGCACGCACACCTGCCCACGTCCCTCCGTGGCTATCAATGGTTTTGGG
TTCTTCAGTTCCCTCGCCAGCGACGCCCCTCTTGAGGAGGCCTGCATGGA
CAGGCGATAGCAATGACGCGGAGTCCGTGGCCTCATCCACTAGAGGCAGT
CGCGAGCAGTGCAGCTATGAGACGCCTTCCGGGAAGGAGAACGACTTTCC
CCTTCGCTCAAGCGGCGGCAGCACCACCAGTAGGATCAGCAGCGCAAGCA
GCAGTTGCAGCAACAGCCCCTGGAGCGGGAGAAGAGGAGGCACTGAAGGT
GCCTCGAACCCTGGTTTTAATCCCTCTCCTTCGTCGAAGGACAGAGGGCA
GCAGGGCCCCGCAGGGCCCACCCGCCAGGTGCTGTTGCCTGCGCGGGACG
AGCCTCATGCACGTCTTTCCGTGTCCTCTCTTCCAGCATCCGGTTGCCTG
CACGAAGGGAACGGGAAGACATGGATCCCTGGCGGCTTAAAGACATGGCA
GGCGAGCAGGCGGCGAGTTCGCACAGCGGGGGCACGGATATGCGCGGGAG
AGGCCTGCGTTGCGTGCAGCAATAGTGCGGCTGCGAGCGCGTGTTCAGTC
CAGGTTTCGTCCGATGGGAAAGGTATTCTAGTGGGATCACGAAATCGCAC
TGTAACTCTCTTCGACACCCAATCTCACGAGGTCGTATACCGTTTTGGCC
ACCCAAGGCTGTCTCGTGCCCGCCCAGTGCTTGTGGAAAGCTCTCCGAAT
GGTGGGGTTGGGGGTTGGGGTAGAGGCAGGGGCGGGACCGGGAGTGGGGA
TGTCTTCGCCGGAACCATGGAAGGGGAGCTTCGATCTTGGAGAGTGGGTT
CGCAATTTCCCAACCGTGTCTTCAAAAAGGCGAGCCACCACCAGGGCTTC
GAGATTTACTCTGTTGCCATAAGCAATAGCGGCTGTATGTTTGCCTCATC
CGACTCCAGCGGAGCGGTTTACGTACAGTCAGCCACGTCCGGGAGAGACG
CCCAGGACAGCAGTGGGGCGGATGCCAAACATTCAGGGGGAGACTAG
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