mRNA_Ecto-sp6_S_contig9.18275.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18275.1
Unique NamemRNA_Ecto-sp6_S_contig9.18275.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18275.1 vs. uniprot
Match: D7FVC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.600e-41
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 MIQGGMRCMCILVETLDVQG-VEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRRRHKRQVKASINAECLRGPRRAP 231
            M QGGMRCMCILVETLDV   VEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRRRHKRQVKASINAEC RGPRRAP
Sbjct:    1 MTQGGMRCMCILVETLDVVACVEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRRRHKRQVKASINAECCRGPRRAP 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVC0_ECTSI3.600e-4193.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2589704..2591025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350545.9608462-CDS-Ecto-sp6_S_contig9:2589703..25897621682350545.9608462-CDS-Ecto-sp6_S_contig9:2589703..2589762Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2589704..2589762 +
1682350545.969897-CDS-Ecto-sp6_S_contig9:2590179..25902881682350545.969897-CDS-Ecto-sp6_S_contig9:2590179..2590288Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2590180..2590288 +
1682350545.9779105-CDS-Ecto-sp6_S_contig9:2590959..25910251682350545.9779105-CDS-Ecto-sp6_S_contig9:2590959..2591025Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2590960..2591025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18275.1prot_Ecto-sp6_S_contig9.18275.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2589704..2591025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18275.1

>prot_Ecto-sp6_S_contig9.18275.1 ID=prot_Ecto-sp6_S_contig9.18275.1|Name=mRNA_Ecto-sp6_S_contig9.18275.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp
MIQGGMRCMCILVETLDVQGVEANRQLGARGRRTAGALGRSSQLAAVPLA
PPPRRRHKRQVKASINAECLRGPRRAP*
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mRNA from alignment at Ecto-sp6_S_contig9:2589704..2591025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18275.1 ID=mRNA_Ecto-sp6_S_contig9.18275.1|Name=mRNA_Ecto-sp6_S_contig9.18275.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1322bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2589704..2591025+ (Ectocarpus species6 EcLAC_371)
ATGATCCAGGGGGGCATGCGGTGCATGTGCATCCTGGTGGAGACATTGGA
CGTGCAGGGGTCGCCTGGTGAGAGTTATTGAAGTGTTTCGTTTTTATCTA
TGGGGCCAAGCAAGATTTCAAGGTATTCTTGTGGTTGATCCGACCATTTG
GAGTATTCCTGCACTCAACATCTCAATTTATCTCCTTTGACCTTTCCACA
GAGACAAGTTCACGAAGGAGCTCCGCGTTGTCTCCCAACATTCATTCTGC
CCGCGTGCCCTTATTTCATTCCGAGAAGTGTCCAACAATCCATCCACGAT
ATTATCTAACAGCAAGCACGTCTCTTGGCTGCGTAGTGCCGGGAAACAAG
CACCTCGAAATGAGTGAGCGTACGATATGATTCGGAGGGCTGCGGCATTT
TTGCTTCCATGCTGCATTTTTAACCTTCGCGTGCAGGTTGACCATGTCTG
TCGACGAAATCATGTGGTGTGGGCAGCGTCGAGGCAAACCGCCAGCTTGG
GGCCCGAGGCCGTCGGACGGCGGGCGCGCTGGGACGGTCATCGCAGCTGG
CTGCCGTGCCACTGGCACCACCACCGCGGCGACGGGTGACTCTACCGCTA
GTCACATCTGCGCCCGCACTCTCGTCGCTGGCCACCGCACCCAACTCGGC
GAGGGAGAGACAGAGACGAGTAGAGGGTGCAGCGCAGGAAGACAGCGGCA
GGATCCGCCAGGGACAGGCCGCGTCGCCAGCTCTTTCTTCTTCGAGCGGC
GGTGTTCGTGGCCGCGATGGCCGGAACACCGACGACTCTCTGCTGACCCT
CGCGCGGGCCGCCAGCACCACAGCTACTGCGCGCCCCGCCCGCCGTACCA
GGAGCCATACCACCGCCATCGCCAACACCACCAGTGCCGCTACCGCTACC
ATCCGCGCAAGCTCCATCATCACCAACAGCAACAGCACCACTGCCGATAA
TAATACCGCTGGTACCCCCACTGCTAGCATCACCACCAGGGGCCGCGCCA
CCATCACTGATGTCGCAGGCCGCCCCGGCCGTACCACCCCTGCGACCGCC
ACCACCACCGCTAGTACCTCTACCACCGCTACCTCTAGCACGAGCGATAG
GACGAGCGCCAGCGCCAGCGACAGCGCAAGCGCAAGCGACACCACCACCG
CCGCTGGTAGTACCGCTGGTGCCCGCACCGGTAGTACTCCAATCGACGGC
GGAACCACTACCGCTACCTCAACCAACCTCCTTTGGCGTGGTGAGGCTAC
CAAGAGCACAAGCGCCAGGTCAAAGCGTCGATCAACGCGGAGTGCCTGCG
AGGGCCACGACGGGCACCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2589704..2591025+

>mRNA_Ecto-sp6_S_contig9.18275.1 ID=mRNA_Ecto-sp6_S_contig9.18275.1|Name=mRNA_Ecto-sp6_S_contig9.18275.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2589704..2591025+ (Ectocarpus species6 EcLAC_371)
ATGATCCAGGGGGGCATGCGGTGCATGTGCATCCTGGTGGAGACATTGGA
CGTGCAGGGCGTCGAGGCAAACCGCCAGCTTGGGGCCCGAGGCCGTCGGA
CGGCGGGCGCGCTGGGACGGTCATCGCAGCTGGCTGCCGTGCCACTGGCA
CCACCACCGCGGCGACGGCACAAGCGCCAGGTCAAAGCGTCGATCAACGC
GGAGTGCCTGCGAGGGCCACGACGGGCACCGTAG
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