mRNA_Ecto-sp6_S_contig9.18261.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18261.1
Unique NamemRNA_Ecto-sp6_S_contig9.18261.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2402614..2403063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size433
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.562279-UTR-Ecto-sp6_S_contig9:2402613..24026321682350514.562279-UTR-Ecto-sp6_S_contig9:2402613..2402632Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2402614..2402632 +
1682350514.5921655-UTR-Ecto-sp6_S_contig9:2403048..24030631682350514.5921655-UTR-Ecto-sp6_S_contig9:2403048..2403063Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2403049..2403063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.5722768-CDS-Ecto-sp6_S_contig9:2402632..24029061682350514.5722768-CDS-Ecto-sp6_S_contig9:2402632..2402906Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2402633..2402906 +
1682350514.5821562-CDS-Ecto-sp6_S_contig9:2402923..24030481682350514.5821562-CDS-Ecto-sp6_S_contig9:2402923..2403048Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2402924..2403048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18261.1prot_Ecto-sp6_S_contig9.18261.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2402633..2403048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18261.1

>prot_Ecto-sp6_S_contig9.18261.1 ID=prot_Ecto-sp6_S_contig9.18261.1|Name=mRNA_Ecto-sp6_S_contig9.18261.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=133bp
MGENEPQQDGVVFRLHFHVVELESSQGSLLIVVLLVDQLLERCRRLVIVP
AVAPGAVRRIDRFPGRHIDEQYLSIDFLDNVSVLASISELVWQMHIGMIR
SKPSEGETHIERPFFIYIAQPTYIDRNRRKIH*
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mRNA from alignment at Ecto-sp6_S_contig9:2402614..2403063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18261.1 ID=mRNA_Ecto-sp6_S_contig9.18261.1|Name=mRNA_Ecto-sp6_S_contig9.18261.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2402614..2403063+ (Ectocarpus species6 EcLAC_371)
GTTTTTCGTAGGCTTTTTCATGGGAGAGAACGAACCACAGCAAGACGGTG
TGGTGTTCAGACTCCATTTTCATGTCGTTGAGTTGGAGAGTTCGCAAGGA
TCTCTTTTAATTGTTGTTCTACTTGTTGACCAATTGTTAGAGCGTTGCCG
GAGGCTGGTGATCGTACCTGCAGTCGCGCCTGGAGCTGTGCGACGTATCG
ATCGGTTTCCTGGGCGCCATATTGACGAACAATATTTATCGATCGATTTC
CTGGACAACGTATCGGTATTAGCAAGCATATCGGAACTAGTTTGCCGGAC
GATGTTGAAGGGCAAATGCATATTGGTATGATACGTTCGAAGCCATCGGA
AGGAGAAACACATATTGAACGACCATTTTTCATCTATATTGCTCAACCAA
CATATATTGATCGTAATCGTCGCAAAATACATTGATTAGAGTAATACACG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2402614..2403063+

>mRNA_Ecto-sp6_S_contig9.18261.1 ID=mRNA_Ecto-sp6_S_contig9.18261.1|Name=mRNA_Ecto-sp6_S_contig9.18261.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2402614..2403063+ (Ectocarpus species6 EcLAC_371)
ATGGGAGAGAACGAACCACAGCAAGACGGTGTGGTGTTCAGACTCCATTT
TCATGTCGTTGAGTTGGAGAGTTCGCAAGGATCTCTTTTAATTGTTGTTC
TACTTGTTGACCAATTGTTAGAGCGTTGCCGGAGGCTGGTGATCGTACCT
GCAGTCGCGCCTGGAGCTGTGCGACGTATCGATCGGTTTCCTGGGCGCCA
TATTGACGAACAATATTTATCGATCGATTTCCTGGACAACGTATCGGTAT
TAGCAAGCATATCGGAACTAGTTTGGCAAATGCATATTGGTATGATACGT
TCGAAGCCATCGGAAGGAGAAACACATATTGAACGACCATTTTTCATCTA
TATTGCTCAACCAACATATATTGATCGTAATCGTCGCAAAATACATTGA
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