mRNA_Ecto-sp6_S_contig9.18260.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18260.1
Unique NamemRNA_Ecto-sp6_S_contig9.18260.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18260.1 vs. uniprot
Match: A0A6H5KHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ8_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 8.110e-61
Identity = 107/120 (89.17%), Postives = 110/120 (91.67%), Query Frame = 2 
Query:  257 LDCKSLPLALRGVAQSGFGCPASAGGVERGFCVADFFMPSRRSSLDPAYLEMGLFLRAHERNIPNDIPTLTDAQQQAAIPNRFRKQDLLDEVKVLDVELDERSDGQNGDAQEYPSDSDAA 616
            LD KSLPLALR VAQS FGCPASAGGVER FCVADFFMP RRSSLDPAYL++GLFLR H+R IPNDI TLTDAQQQAAIPNRFRKQDLLDEVKVLDVELDERSDGQN DAQEYPSDSD A
Sbjct:  441 LDGKSLPLALRAVAQSVFGCPASAGGVERDFCVADFFMPGRRSSLDPAYLDVGLFLRVHKRIIPNDILTLTDAQQQAAIPNRFRKQDLLDEVKVLDVELDERSDGQNDDAQEYPSDSDTA 560
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BLAST of mRNA_Ecto-sp6_S_contig9.18260.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.510e-32
Identity = 71/122 (58.20%), Postives = 86/122 (70.49%), Query Frame = 2 
Query:  206 QIPQQLRMLENGADYWTLDCKSLPLALRGVAQSGFGCPASAGGVERGFCVADFFMPSRRSSLDPAYLEMGLFLRAHERNIPNDIPTLTDAQQQAAIPNRFRKQDLLDEVKVLDVELDERSDG 571
            QIP + R  ENGA+YW L  K  P ALR VAQ+ +G PASAG VER F +AD FMP +R+SLDPAYLEM L+LRAH  +IP DIP L DA   AAIP+RFR    ++EV+VLD   +E+  G
Sbjct:  517 QIPPEERT-ENGAEYWRLHGKKHPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIPKLDDASVAAAIPDRFRDPQAVEEVRVLDFTEEEKEVG 637
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BLAST of mRNA_Ecto-sp6_S_contig9.18260.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.110e-29
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 2 
Query:  233 ENGADYW-TLDCKSLPLALRGVAQSGFGCPASAGGVERGFCVADFFMPSRRSSLDPAYLEMGLFLRAHERNIPNDIPTLT-DAQQQAAIPNRFRKQDLLDEVKVLDVELDERSD 568
            ++ ADYW T   KS PL LR VAQ   GCPAS G +ER F +AD FMP +R+S+DPAY EM LFLRA    IP+D+P    +A+Q AAIPNR R + LL+ V+VLDV+++E SD
Sbjct:  662 KDAADYWSTPHGKSQPLPLRAVAQGVLGCPASTGAMERDFSIADMFMPRKRASVDPAYFEMSLFLRAQYDFIPDDVPKFANEAEQTAAIPNRLRDEKLLEAVRVLDVDVEETSD 775
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BLAST of mRNA_Ecto-sp6_S_contig9.18260.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.470e-27
Identity = 65/88 (73.86%), Postives = 70/88 (79.55%), Query Frame = 2 
Query:  353 VADFFMPSRRSSLDPAYLEMGLFLRAHERNIPNDIPTLTDAQQQAAIPNRFRKQDLLDEVKVLDVELDERSDGQNGDAQEYPSDSDAA 616
            +AD +M  R     P+    GLFLRAH+R IPNDIPTLTDAQQQ AIPNRF KQDLLDEVKVL+VELDERSDGQN DAQEYPS SD A
Sbjct:  757 IADDWMNLRAILARPS----GLFLRAHKRIIPNDIPTLTDAQQQEAIPNRFPKQDLLDEVKVLNVELDERSDGQNDDAQEYPSGSDTA 840
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KHQ8_9PHAE8.110e-6189.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP19_9PHAE7.510e-3258.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE8.110e-2956.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7T5_9PHAE4.470e-2773.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2401826..2402516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size691
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350542.6800933-UTR-Ecto-sp6_S_contig9:2401825..24020511682350542.6800933-UTR-Ecto-sp6_S_contig9:2401825..2402051Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2401826..2402051 +
1682350542.7024188-UTR-Ecto-sp6_S_contig9:2402444..24025161682350542.7024188-UTR-Ecto-sp6_S_contig9:2402444..2402516Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2402445..2402516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350542.6918101-CDS-Ecto-sp6_S_contig9:2402051..24024441682350542.6918101-CDS-Ecto-sp6_S_contig9:2402051..2402444Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2402052..2402444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18260.1prot_Ecto-sp6_S_contig9.18260.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2402052..2402444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18260.1

>prot_Ecto-sp6_S_contig9.18260.1 ID=prot_Ecto-sp6_S_contig9.18260.1|Name=mRNA_Ecto-sp6_S_contig9.18260.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=131bp
MLENGADYWTLDCKSLPLALRGVAQSGFGCPASAGGVERGFCVADFFMPS
RRSSLDPAYLEMGLFLRAHERNIPNDIPTLTDAQQQAAIPNRFRKQDLLD
EVKVLDVELDERSDGQNGDAQEYPSDSDAA*
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mRNA from alignment at Ecto-sp6_S_contig9:2401826..2402516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18260.1 ID=mRNA_Ecto-sp6_S_contig9.18260.1|Name=mRNA_Ecto-sp6_S_contig9.18260.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=691bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2401826..2402516+ (Ectocarpus species6 EcLAC_371)
CGTATTGAAATATAACGGCCTGTTTTCTGGTCATTGATACGGTCAATACA
TATGGAATGGACATTTATTGGGTTTACAACATTTTCTTTACCCTGTGTTA
CCCCGGCTGATACCTCTCGTGAGACAGAGGAACATACCACAACATGCATA
CATTACATACAGTACATACGTTGCGTAGTTTCTGTACCTCCTCCTGTCAC
CCAGGCAGATCCCCCAACAGCTACGGATGCTGGAGAACGGCGCAGACTAC
TGGACCCTCGACTGTAAATCGCTACCGTTAGCACTCCGAGGAGTTGCGCA
GTCTGGCTTCGGTTGTCCGGCCTCAGCAGGTGGTGTGGAGCGAGGCTTCT
GTGTCGCCGATTTCTTCATGCCCTCCAGGCGATCCTCGCTTGACCCAGCG
TACTTGGAGATGGGGCTCTTTCTTCGAGCGCATGAGAGGAACATTCCCAA
CGACATCCCGACGCTGACCGACGCCCAGCAACAGGCAGCCATCCCGAATC
GCTTTCGGAAGCAGGATCTGCTGGACGAGGTTAAGGTGTTGGACGTGGAG
CTGGACGAGCGTAGCGACGGACAAAACGGCGATGCTCAGGAGTATCCGTC
GGACAGCGACGCCGCCTAGAGGCAGGTGCTGAGTTGTCCTGAGAGTGCAC
CCCGCCCCGGGTGGAGGTGCGGCCGCCGAGCCAGTACCAGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2401826..2402516+

>mRNA_Ecto-sp6_S_contig9.18260.1 ID=mRNA_Ecto-sp6_S_contig9.18260.1|Name=mRNA_Ecto-sp6_S_contig9.18260.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2401826..2402516+ (Ectocarpus species6 EcLAC_371)
ATGCTGGAGAACGGCGCAGACTACTGGACCCTCGACTGTAAATCGCTACC
GTTAGCACTCCGAGGAGTTGCGCAGTCTGGCTTCGGTTGTCCGGCCTCAG
CAGGTGGTGTGGAGCGAGGCTTCTGTGTCGCCGATTTCTTCATGCCCTCC
AGGCGATCCTCGCTTGACCCAGCGTACTTGGAGATGGGGCTCTTTCTTCG
AGCGCATGAGAGGAACATTCCCAACGACATCCCGACGCTGACCGACGCCC
AGCAACAGGCAGCCATCCCGAATCGCTTTCGGAAGCAGGATCTGCTGGAC
GAGGTTAAGGTGTTGGACGTGGAGCTGGACGAGCGTAGCGACGGACAAAA
CGGCGATGCTCAGGAGTATCCGTCGGACAGCGACGCCGCCTAG
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