mRNA_Ecto-sp6_S_contig9.18257.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18257.1
Unique NamemRNA_Ecto-sp6_S_contig9.18257.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18257.1 vs. uniprot
Match: A0A6H5KWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWJ0_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.150e-42
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:   37 MQLGEETMLSVRSMIQRFRENKPTSRQEREQRGKQDLWWVREESPAGKDDDERVVREHSVENDRLRFPIAGEKIRRR 267
            MQLGEETMLSVRSMIQRFRENKPTSRQEREQRGKQDLWWVREESPAGKDD+ RVV+EH+VENDRLRFPIAGEKIRRR
Sbjct:    1 MQLGEETMLSVRSMIQRFRENKPTSRQEREQRGKQDLWWVREESPAGKDDNVRVVQEHTVENDRLRFPIAGEKIRRR 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWJ0_9PHAE2.150e-4294.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2349248..2349677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size269
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.5228333-CDS-Ecto-sp6_S_contig9:2349247..23493731682350514.5228333-CDS-Ecto-sp6_S_contig9:2349247..2349373Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2349248..2349373 -
1682350514.533683-CDS-Ecto-sp6_S_contig9:2349536..23496771682350514.533683-CDS-Ecto-sp6_S_contig9:2349536..2349677Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2349537..2349677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18257.1prot_Ecto-sp6_S_contig9.18257.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2349248..2349677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18257.1

>prot_Ecto-sp6_S_contig9.18257.1 ID=prot_Ecto-sp6_S_contig9.18257.1|Name=mRNA_Ecto-sp6_S_contig9.18257.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=89bp
CRWQIQDFPGLAMQLGEETMLSVRSMIQRFRENKPTSRQEREQRGKQDLW
WVREESPAGKDDDERVVREHSVENDRLRFPIAGEKIRRR
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mRNA from alignment at Ecto-sp6_S_contig9:2349248..2349677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18257.1 ID=mRNA_Ecto-sp6_S_contig9.18257.1|Name=mRNA_Ecto-sp6_S_contig9.18257.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=430bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2349248..2349677- (Ectocarpus species6 EcLAC_371)
TGCCGGTGGCAGATTCAGGATTTTCCAGGCCTTGCTATGCAGCTAGGAGA
GGAGACGATGCTCTCTGTCCGCTCGATGATCCAGCGTTTCCGGGAAAACA
AACCTACAAGTCGGCAGGAACGAGAACAACGGGGAAAGCAGGTGCTGGAC
GATTGTATATCCGAAATCTTGTGGTCTTTTGCAAAGGTACAGCAGTACAA
ACAAAATGTCTTCAGTAAAAATTGGGCCGGTAAATTTGAGGTCACAGCAA
ATCCCGCCTTCCTGGACACCGCCGTGAATATGTTCTCCCTCATGCGTAAT
TCAGGATTTGTGGTGGGTACGCGAAGAGAGCCCAGCAGGAAAGGACGACG
ATGAACGAGTAGTACGAGAGCACTCGGTTGAGAATGACCGACTCCGGTTC
CCCATCGCAGGCGAGAAGATACGGCGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2349248..2349677-

>mRNA_Ecto-sp6_S_contig9.18257.1 ID=mRNA_Ecto-sp6_S_contig9.18257.1|Name=mRNA_Ecto-sp6_S_contig9.18257.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2349248..2349677- (Ectocarpus species6 EcLAC_371)
TGCCGGTGGCAGATTCAGGATTTTCCAGGCCTTGCTATGCAGCTAGGAGA
GGAGACGATGCTCTCTGTCCGCTCGATGATCCAGCGTTTCCGGGAAAACA
AACCTACAAGTCGGCAGGAACGAGAACAACGGGGAAAGCAGGATTTGTGG
TGGGTACGCGAAGAGAGCCCAGCAGGAAAGGACGACGATGAACGAGTAGT
ACGAGAGCACTCGGTTGAGAATGACCGACTCCGGTTCCCCATCGCAGGCG
AGAAGATACGGCGGAGG
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