mRNA_Ecto-sp6_S_contig9.18241.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18241.1
Unique NamemRNA_Ecto-sp6_S_contig9.18241.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18241.1 vs. uniprot
Match: D7FVE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE9_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 4.590e-107
Identity = 163/182 (89.56%), Postives = 164/182 (90.11%), Query Frame = 1 
Query:    1 MAAKQVKRDFTADGPSVYFISDWNKDSEPKRSKRKKVAAKNLQEATRLQVERWIDQGALRQNFAKESPRPVGVRKSRETTSANMGTQVEPPELQRSSDEEASTPXXXXXXXXXXXXXRDLRPPMDEPLLGEVAEAMFWIDTWAEVPSLHSFSEPTFLDNRTNRRLSNVNARFRNMSIADEKP 546
            MAAKQVKRDFTADGPSVYFISDW KDSEPKRSKRKKVAAKNLQEATRLQVERWIDQGALRQNFAKESPRPVGV KSRETTSANMGTQVEP ELQRSS+EEASTP             RDLRPPMDEPLLGEVAEAMFW DTWAEVPSL SFSEPTFLDNRTNRRLSNVNARFRNMSIADEKP
Sbjct:    1 MAAKQVKRDFTADGPSVYFISDWKKDSEPKRSKRKKVAAKNLQEATRLQVERWIDQGALRQNFAKESPRPVGVGKSRETTSANMGTQVEPTELQRSSEEEASTPTTVEEPDLQCSWDRDLRPPMDEPLLGEVAEAMFWSDTWAEVPSLRSFSEPTFLDNRTNRRLSNVNARFRNMSIADEKP 182
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BLAST of mRNA_Ecto-sp6_S_contig9.18241.1 vs. uniprot
Match: A0A6H5K2T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.200e-25
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:  352 RDLRPPMDEPLLGEVAEAMFWIDTWAEVPSLHSFSEPTFLDNRTNRRLSNVNARFRNMSIADEKP 546
            ++LRPP++EPLLGEVAEA+ W DTWAEVPSL SFSEP  L+NRTNR+LSNV AR RNMSI DE P
Sbjct:   12 QELRPPLEEPLLGEVAEAIIWSDTWAEVPSLDSFSEPICLENRTNRQLSNVTARLRNMSIGDEIP 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVE9_ECTSI4.590e-10789.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2T7_9PHAE2.200e-2575.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2176429..2178628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size549
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000850.1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350540.3785439-CDS-Ecto-sp6_S_contig9:2176428..21767191682350540.3785439-CDS-Ecto-sp6_S_contig9:2176428..2176719Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2176429..2176719 -
1682350540.3896146-CDS-Ecto-sp6_S_contig9:2177851..21779871682350540.3896146-CDS-Ecto-sp6_S_contig9:2177851..2177987Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2177852..2177987 -
1682350540.3996606-CDS-Ecto-sp6_S_contig9:2178506..21786281682350540.3996606-CDS-Ecto-sp6_S_contig9:2178506..2178628Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2178507..2178628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18241.1prot_Ecto-sp6_S_contig9.18241.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2176429..2178628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18241.1

>prot_Ecto-sp6_S_contig9.18241.1 ID=prot_Ecto-sp6_S_contig9.18241.1|Name=mRNA_Ecto-sp6_S_contig9.18241.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=183bp
MAAKQVKRDFTADGPSVYFISDWNKDSEPKRSKRKKVAAKNLQEATRLQV
ERWIDQGALRQNFAKESPRPVGVRKSRETTSANMGTQVEPPELQRSSDEE
ASTPTTVEEPDLQCSWDRDLRPPMDEPLLGEVAEAMFWIDTWAEVPSLHS
FSEPTFLDNRTNRRLSNVNARFRNMSIADEKP*
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mRNA from alignment at Ecto-sp6_S_contig9:2176429..2178628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18241.1 ID=mRNA_Ecto-sp6_S_contig9.18241.1|Name=mRNA_Ecto-sp6_S_contig9.18241.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2200bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2176429..2178628- (Ectocarpus species6 EcLAC_371)
ATGGCGGCCAAACAAGTCAAGCGGGACTTCACGGCCGATGGGCCAAGCGT
ATATTTTATATCCGACTGGAATAAAGACAGCGAGCCCAAGAGGAGCAAGC
GCAAGAAGGTTGCTGCTAAGAAGTGAGTTGATTGTATTGTGGTTCCCTCA
AGCTTTCACATTCCTGAATCCTGGCTGTGAGCCCCCCTGTCTTTGATAGA
ATCTTTATCAAGTGAAAACTCCAACATGGTCCGTTGAATGTCTCGGCACG
TTATCAATATCAATTTTTTTATGTTTCCCGCACGGCATCTACTGGGCAGA
AATGGTGTGAGTGCTGATTTAAAGTGAACAAAAAGAACAATAATTTAACC
ACCTTTTGCCAACAACCATGGAGCAGAAATTCTCTTCGTCATCTTCAAGA
TAATATCAGGTCCCCAGCTAGCCGTAGCCAACGTGAGAGTTACATACCAG
CTACGTAGATAGGTTGTGCTCAACACACACTGCTGTACCAGCATGACATA
TAGCAGTTGATTGTCCATGAAAACGTGCCCCTTCTTCGTCTATGTGGGCC
GTCACAAACTCAGAAAATAATTAATCGAGTGAGAAACACCCCATATTTTC
ATTCACGACTGAAGCGTTCATTTTTCTACCCCCATTGGCAGCTTGCAAGA
GGCAACACGCCTCCAAGTGGAGCGCTGGATTGACCAAGGCGCGCTTAGGC
AGAACTTCGCAAAAGAGTCTCCTCGCCCCGTGGGCGTAAGAAAGAGCAGG
GAAACGACTTCCGCAAACATGGGAACGGTAAGAGAGCCCACCTGCTTGCT
CAAGTCTCGAATTCCACCTACAGTAGAGTTGTGGAGTACAGGCGTGCCCA
CACGTACTTATTCGTTGGCGCAGCAGTACCGATACGACTCTGCATTAATA
GGTGATTGAAGGGATGATACACATGTTCGTGCTGACCACCACGCACAACT
AACTACCTCGGATACGAGTGGTGCCGTATTTAGCTTCACCCTTCGTTGTA
ACTCCTCCGTCGAAGGCACAAACACATGTTTTTGCCGGATTCGCTTGACT
ATGTCATGTTAAGGATGCTGTCGAGAGCTGGCGTATGAAATTGTGAAATA
TGTTGTCCGTGCTTCATTCCACTTGTTTCGATACTATCGCCCCCCGTGTC
AAGATCCTTGTCCATTAACGGAAGGCATACAGATACACGGGGCGGATCTT
CATTCGCGCGACGTCTCTCATAGTCCATGGCCGTCGATAACATCTCCCGA
TGCTTTATTCTGATATAGAGTGCTGCGCCAAAAAACAAGTACGTGTGGGC
ACGCGTGCACTCCAAATCACTAGGTGGCATTCGTGAGCAAGCAAGTGGGC
TCTCTTACCGACCCCACGTTCTTTCCGGAGGTGGTTTCCACGCTCTTGCC
GTGACGGTCCTTCGTCCAATCAGTCTAGTAGTTCATGGCCGTCGATAACA
TCTCCCTGGTGCTTTATTCTGAATGTTGTACCAAGATCTCCCGCGACATC
CCACCGCAATACACCGCTTGCTCTTGCAACCCCCGTCTTCCTCCTTCGTA
GATCCTGTTTTCATAATCGCCTTTTTTGTCATTCCGCTTTTCTTGTCATT
TTGTCCAACCCCTCCCCTTTCCCTTTGTCCTCGCGATAAGTCTTTGCCCG
CGTTGAGCGGGACGTTCCATGTGTGTTTCGACCTTTACGTCGTAAATAGT
AGAAGGTGTCCTGTCTCAAAATCGCGCTGTACTCACAAAGCTCCCGACCG
CTGGAGGACAAATCAAAACGCGAAGAACCTCTTCCCCAGGCATCACCAAC
ATGAAAACCTTGAACGGAGGCGATGATTCGTCTCCTCTCGTCGTCGCCAC
GGCGGAATGGCAAACATTGATCGACGCTCTGCTTCTTCTCTTCCCCGATC
CATGTGCAGCAGGTGGAGCCGCCGGAGCTGCAACGCTCCAGCGACGAAGA
AGCGTCGACGCCCACCACCGTCGAAGAGCCGGACCTGCAATGCTCATGGG
ACCGAGATTTGCGGCCTCCCATGGACGAACCGCTCCTAGGCGAAGTCGCT
GAAGCGATGTTCTGGATCGACACCTGGGCGGAAGTCCCGTCGCTGCACTC
CTTCTCCGAGCCCACATTTTTGGACAACCGGACGAATAGGCGATTGTCCA
ATGTTAATGCAAGGTTCCGGAACATGTCGATTGCCGACGAGAAGCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2176429..2178628-

>mRNA_Ecto-sp6_S_contig9.18241.1 ID=mRNA_Ecto-sp6_S_contig9.18241.1|Name=mRNA_Ecto-sp6_S_contig9.18241.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2176429..2178628- (Ectocarpus species6 EcLAC_371)
ATGGCGGCCAAACAAGTCAAGCGGGACTTCACGGCCGATGGGCCAAGCGT
ATATTTTATATCCGACTGGAATAAAGACAGCGAGCCCAAGAGGAGCAAGC
GCAAGAAGGTTGCTGCTAAGAACTTGCAAGAGGCAACACGCCTCCAAGTG
GAGCGCTGGATTGACCAAGGCGCGCTTAGGCAGAACTTCGCAAAAGAGTC
TCCTCGCCCCGTGGGCGTAAGAAAGAGCAGGGAAACGACTTCCGCAAACA
TGGGAACGCAGGTGGAGCCGCCGGAGCTGCAACGCTCCAGCGACGAAGAA
GCGTCGACGCCCACCACCGTCGAAGAGCCGGACCTGCAATGCTCATGGGA
CCGAGATTTGCGGCCTCCCATGGACGAACCGCTCCTAGGCGAAGTCGCTG
AAGCGATGTTCTGGATCGACACCTGGGCGGAAGTCCCGTCGCTGCACTCC
TTCTCCGAGCCCACATTTTTGGACAACCGGACGAATAGGCGATTGTCCAA
TGTTAATGCAAGGTTCCGGAACATGTCGATTGCCGACGAGAAGCCTTGA
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