mRNA_Ecto-sp6_S_contig9.18235.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: D7FVF5_ECTSI (Transcription and mRNA export factor ENY2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF5_ECTSI) HSP 1 Score: 159 bits (401), Expect = 3.240e-43 Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1
Query: 76 MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 375
MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXX HCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST
Sbjct: 1 MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXEHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 100
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A7S2WUF1_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUF1_9STRA) HSP 1 Score: 125 bits (314), Expect = 8.840e-31 Identity = 78/101 (77.23%), Postives = 90/101 (89.11%), Query Frame = 1
Query: 79 SDKQE--RRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 375
+DKQ+ RRRKDEAVRATIMQKLIETGE+ERLK++LR XXXXXXXXXX HCK++IR KGL++I+VDELV EITP GR TVPD IKA+LLQRIR+FLQST
Sbjct: 5 ADKQQEDRRRKDEAVRATIMQKLIETGEKERLKEMLRSXXXXXXXXXXLREHCKDVIRKKGLDRITVDELVAEITPHGRDTVPDKIKADLLQRIRQFLQST 105
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A6U1JN82_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1JN82_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.540e-30 Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 1
Query: 88 QERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 375
QER++KD+AVR TIMQKL+ETGE+ERLK+LL XXXXXXXXXXXXXX+CKE+IR KGLEKI+VDELV EITPRGRATVPD++K ELLQ IRKFLQ+T
Sbjct: 7 QERKQKDDAVRTTIMQKLVETGEKERLKELLXXXXXXXXXXXXXXXYCKEVIRSKGLEKITVDELVAEITPRGRATVPDEVKTELLQSIRKFLQAT 102
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A7S3ZV17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZV17_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.180e-28 Identity = 77/94 (81.91%), Postives = 88/94 (93.62%), Query Frame = 1
Query: 88 QERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQ 369
QER++KD+AVR TIMQKL+ETGE+ERLK+LL XXXXXXXXXXXXXX+CKE+IR KGLEKI+VDELV EITPRGRATVPD++K ELLQ IRKFLQ
Sbjct: 7 QERKQKDDAVRTTIMQKLVETGEKERLKELLXXXXXXXXXXXXXXXYCKEVIRSKGLEKITVDELVAEITPRGRATVPDEVKTELLQSIRKFLQ 100
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A7S2ARR6_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ARR6_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.030e-28 Identity = 77/96 (80.21%), Postives = 89/96 (92.71%), Query Frame = 1
Query: 88 QERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 375
++R+RKDEAVRATIMQKLIETGE+ERLK++LRXXXXXXXXXXXXXX E+IR KGLE+I+VDELV +ITP+GRATVP+ IK ELLQRIRKFLQST
Sbjct: 20 EDRKRKDEAVRATIMQKLIETGEKERLKEMLRXXXXXXXXXXXXXXXXXEVIRSKGLERITVDELVSQITPQGRATVPEKIKVELLQRIRKFLQST 115
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A7S2V4S5_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S5_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.470e-28 Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query: 76 MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 375
M+ K ER +KDE VRATIMQ+LIETGE++RLK+L XXXXXXXXXXXXXX IIR KGLEKI+VDELV EITPRGRATVPD++KAELLQRIRKFLQST
Sbjct: 6 MAKKVERAQKDEQVRATIMQRLIETGEKDRLKELXXXXXXXXXXXXXXXXXXXXIIRNKGLEKITVDELVQEITPRGRATVPDNVKAELLQRIRKFLQST 105
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A210QN45_MIZYE (Transcription and mRNA export factor ENY2 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QN45_MIZYE) HSP 1 Score: 114 bits (286), Expect = 6.570e-27 Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 76 MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFL 366
M+D Q+R+ KD +RATI QKL+ETGERERLK+LLR HCKE+++ KGLE I+VD+LV EITP+GRA VPDD+K ELLQRIR FL
Sbjct: 1 MADPQDRKLKDAQMRATINQKLVETGERERLKELLRTRLIECGWRDQLKAHCKEVVKEKGLEHITVDDLVQEITPKGRALVPDDVKKELLQRIRTFL 97
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A2C9M5V1_BIOGL (Transcription and mRNA export factor ENY2 n=3 Tax=Euthyneura TaxID=216307 RepID=A0A2C9M5V1_BIOGL) HSP 1 Score: 111 bits (278), Expect = 8.370e-26 Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 76 MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFL 366
M+D QER+ KD +RATI QKL+ETGERERLK+LLR +CKEI++ KGLE I+VD+LV EITPRGR+ VPD+IK ELLQRIR FL
Sbjct: 1 MADLQERKLKDAHMRATINQKLVETGERERLKELLRARLIECGWRDQLKAYCKEIVQQKGLEHITVDDLVSEITPRGRSLVPDEIKKELLQRIRTFL 97
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A835YYP0_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP0_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.070e-25 Identity = 71/94 (75.53%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 94 RRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 375
+RRK+EAVRA+IMQKL+ETGE+ERLKDLLRXXXXXXXXXXXXXX C++II KGLEK++VDELV EITP+ R TVP++IK+ELL RIR FL++T
Sbjct: 11 KRRKEEAVRASIMQKLVETGEKERLKDLLRXXXXXXXXXXXXXXXCRQIISKKGLEKVTVDELVSEITPKARDTVPEEIKSELLNRIRTFLKAT 104
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Match: A0A0B6YCJ3_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YCJ3_9EUPU) HSP 1 Score: 109 bits (273), Expect = 4.210e-25 Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1
Query: 76 MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFL 366
M+D ER+ KD +RATI QKLIETGERERLK+LLR XXXXXXXXXX +CKE+++ KGLE I+VD+LV+EITPRGR+ VPD++K ELLQRIR FL
Sbjct: 2 MADLTERKLKDAQMRATINQKLIETGERERLKELLRARXXXXXXXXXXKAYCKEVVQQKGLEHITVDDLVNEITPRGRSLVPDEVKKELLQRIRTFL 98 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18235.1 >prot_Ecto-sp6_S_contig9.18235.1 ID=prot_Ecto-sp6_S_contig9.18235.1|Name=mRNA_Ecto-sp6_S_contig9.18235.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=101bp MSDKQERRRKDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKEback to top mRNA from alignment at Ecto-sp6_S_contig9:2115719..2119861- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18235.1 ID=mRNA_Ecto-sp6_S_contig9.18235.1|Name=mRNA_Ecto-sp6_S_contig9.18235.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4143bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2115719..2119861- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2115719..2119861- >mRNA_Ecto-sp6_S_contig9.18235.1 ID=mRNA_Ecto-sp6_S_contig9.18235.1|Name=mRNA_Ecto-sp6_S_contig9.18235.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2115719..2119861- (Ectocarpus species6 EcLAC_371)back to top |