mRNA_Ecto-sp6_S_contig9.18225.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18225.1
Unique NamemRNA_Ecto-sp6_S_contig9.18225.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 5.220e-102
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 1 
Query:    1 MALEARCGAMELEVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVSIVTEN 528
            MALEARCGAMEL+VDELEKG VLMNDKIEA+IKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLV+EK LLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVSIVTEN
Sbjct:    1 MALEARCGAMELQVDELEKGWVLMNDKIEAVIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVDEKTLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVSIVTEN 176
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BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 2.830e-91
Identity = 165/176 (93.75%), Postives = 169/176 (96.02%), Query Frame = 1 
Query:    1 MALEARCGAMELEVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVSIVTEN 528
            MALEARCGAMELEVDELEK  V MNDKIEA+IKRLPKRPGINGDQLRAE+RSID KLTTTSMKLVEEK LLRRKD+IKARLKDLAAYELAQQDVQALKDQRA+LF EKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRV IVTEN
Sbjct:    1 MALEARCGAMELEVDELEKSWVQMNDKIEAVIKRLPKRPGINGDQLRAEMRSIDIKLTTTSMKLVEEKTLLRRKDSIKARLKDLAAYELAQQDVQALKDQRAMLFTEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVLIVTEN 176
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BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Match: A0A835Z3V4_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.370e-20
Identity = 55/170 (32.35%), Postives = 100/170 (58.82%), Query Frame = 1 
Query:    1 MALEARCGAMELEVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRV 510
            +A+ ++    + E   LE  ++    +++A  KRLP+RP     +L  E+  ++   +T SM L +EK +LR++D  +A++KD+      ++D++AL+D+   L  E +  T ++ E+ +GL ++ LA + GV   DL   ++ VP +  GR+IG+ RAAL  LE++C V
Sbjct:   91 VAVASKLAEAQGERSALEVKILETRHRVDAARKRLPRRPREAEKELEDEIAKLEFYRSTNSMSLSKEKEVLRQQDQARAKIKDIKERARQEKDIEALQDKVGALIEESKANTEKVNELSRGLAKVHLAVKAGVGVADLVTATVHVPSDKIGRIIGRSRAALADLEKDCGV 260
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BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Match: A0A7R9YDX4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDX4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.520e-18
Identity = 56/169 (33.14%), Postives = 99/169 (58.58%), Query Frame = 1 
Query:    7 LEARCGAMELEVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVS 513
            +  R    + E + + + L  ++ +I+   KR+PKRP  + +++ A +  ++ + TTTSM L +EK+LLR  DN+K  +K LA  + A + + + +DQR+      R  ++ + E   G++R+ LA+RLGV+  DL    +EVP E  G ++G+    + +L+EEC VS
Sbjct:   11 MRGRLAEAQNERETVREQLNKLDAEIKGHEKRMPKRPRESREEMEARIEQLEYRRTTTSMSLQDEKSLLREIDNLKKSIKCLAVVDEALELLNSKRDQRSACHDRIRVLSSALQEFTAGIKRMELAERLGVSSVDLQSVDVEVPAEKAGELVGRGGQNMRRLQEECGVS 179
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BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Match: A0A7S1TY78_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TY78_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.760e-17
Identity = 54/159 (33.96%), Postives = 91/159 (57.23%), Query Frame = 1 
Query:   37 EVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVS 513
            E + + + L  + + I+  +KR+P+R   N +QL  ++R ++ K TT SM L +EKNLLR  DN K  +KDL   + A   + + +DQR+  +   R  ++ + E+  G++R+ LA RLGV    L    ++VP    G ++G+    L +L+EEC V+
Sbjct:   41 ERETVREQLKRLENDIQGCMKRMPRRVRENQEQLEDKMRQLEYKRTTESMSLQDEKNLLREIDNAKKSIKDLHTAQEAMDVLNSKRDQRSACYDRVRTLSSALQELTAGIKRVELAQRLGVTSDLLESADVKVPGAKAGELVGRGGQNLRRLQEECGVT 199
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BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Match: W7TEY7_9STRA (High density lipoprotein binding protein vigilin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEY7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.140e-16
Identity = 53/171 (30.99%), Postives = 99/171 (57.89%), Query Frame = 1 
Query:    4 ALEARCGAMELEVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVSI 516
            +++ R  A+  +   ++K L  + ++++   +    RP  +  +L   ++ ++ K TT SM L+EEK LLR+    K     +  Y L +  ++ LK  ++ L+ E++ K   M E+ + LR+++LA R+GVA  +L +E++EVP E+  RV+G+    L ++EE CRVS+
Sbjct:    9 SMQERLTALAGDKAAIQKELAKVEERLQEAYQGQGPRPRESEAELDKAMKDLEYKRTTQSMSLMEEKKLLRQIGLYKKEKMRIKEYSLVEDGLKDLKVLKSQLYEERKAKEGAMVELSKALRKMQLAQRVGVAAEELVEETLEVPEESMSRVVGRGGVNLRRIEETCRVSL 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FTS6_ECTSI5.220e-10297.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0D2_9PHAE2.830e-9193.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3V4_9STRA4.370e-2032.35KH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7R9YDX4_9STRA1.520e-1833.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TY78_9STRA5.760e-1733.96Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
W7TEY7_9STRA1.140e-1630.99High density lipoprotein binding protein vigilin n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2010052..2012629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score317.0
Seed ortholog evalue5.5e-84
Seed eggNOG ortholog2880.D7FTS6
Model size528
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.K homology RNA-binding domain
EggNOG OGs28HET@1,2QPSV@2759
Cds size528
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350538.3377118-CDS-Ecto-sp6_S_contig9:2010051..20101861682350538.3377118-CDS-Ecto-sp6_S_contig9:2010051..2010186Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2010052..2010186 +
1682350538.3499088-CDS-Ecto-sp6_S_contig9:2010941..20111001682350538.3499088-CDS-Ecto-sp6_S_contig9:2010941..2011100Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2010942..2011100 +
1682350538.36288-CDS-Ecto-sp6_S_contig9:2011698..20118601682350538.36288-CDS-Ecto-sp6_S_contig9:2011698..2011860Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2011699..2011860 +
1682350538.3754542-CDS-Ecto-sp6_S_contig9:2012557..20126291682350538.3754542-CDS-Ecto-sp6_S_contig9:2012557..2012629Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2012558..2012629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18225.1prot_Ecto-sp6_S_contig9.18225.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2010052..2012629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18225.1

>prot_Ecto-sp6_S_contig9.18225.1 ID=prot_Ecto-sp6_S_contig9.18225.1|Name=mRNA_Ecto-sp6_S_contig9.18225.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=176bp
MALEARCGAMELEVDELEKGLVLMNDKIEALIKRLPKRPGINGDQLRAEV
RSIDTKLTTTSMKLVEEKNLLRRKDNIKARLKDLAAYELAQQDVQALKDQ
RAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREAT
GRVIGKKRAALTQLEEECRVSIVTEN
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mRNA from alignment at Ecto-sp6_S_contig9:2010052..2012629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18225.1 ID=mRNA_Ecto-sp6_S_contig9.18225.1|Name=mRNA_Ecto-sp6_S_contig9.18225.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2578bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2010052..2012629+ (Ectocarpus species6 EcLAC_371)
ATGGCGCTCGAAGCTCGCTGCGGAGCGATGGAGTTGGAAGTGGACGAATT
GGAAAAGGGCTTGGTCCTGATGAACGACAAGATCGAGGCACTTATCAAGC
GTCTGCCTAAGAGACCAGGCATCAACGGAGATCAGGTGAGCGCGAGAATT
CTCGCGGCTGTGCGATGCATGGTGATGGAACTTTTTGCGCTTGGAGGCAA
GGCTGTATCGCGATCTCTCAGCGCGGTTGCCGGATCATCTCCGATCTTTT
TCTCCCACAAGCGCGGGTACACTTTGTCGAAACATGTTCGCGCTGGATCC
GCCGGGCACGCACGGGCGAGGTTCGGCTGCCCGGCTTGGTTGCTGTACTA
GGGCGGCAGGCGCACACATTCTGCTCTCTGTAATGTCGGTTTATGCTCGA
CAAGCATTCATGGGTTTCATCTTGTCAGACTTACCTGGCCGTAATCTTGG
CGCACGCGTGCGCCGAGTCGCACCCGCCGCCATCGATATACCCAGCATAG
ACTACACCGCAACAGCGTGTGTATTGCTGCAGATACGAAGCCTTGTGTGC
ATAGCACGGCTGCGAAGTGACGCCAACGCTGCCGTCGTTCGTCGCCCCCT
GCCTGTCAGGTTTGCTGCGCGAGGACCCATGCCCTCGCATATGTTTATTT
AGATATGATGTAATGATGTGTACTTATTTGAAGGTGGCGACCAAAGCTGG
CACTACAATTCTGCTTCAAGGAGGGCTCCGAAGTTGTTGTAGAGCGCACC
CCACCAATGGGCCAACCGTTACCTCCTGACTCCCACCGTTCGTGAGGATG
ACTGAAAAACTCTGAAACCACTCGCTCCGCCTGCTACTGCTGCCGCCGCT
GCTGGTATTTCCATCTCGCGGTTTGGACCCGCCACTACAGCTTCGGGCGG
AGGTAAGGTCCATCGACACCAAGCTGACCACCACGTCCATGAAGCTGGTG
GAAGAGAAGAACCTCCTCCGCAGGAAGGATAACATCAAGGCCCGCCTCAA
AGACCTGGCCGCCTACGAGTTGGCCCAGCAGGACGTGCAAGCACTAAAGG
TCGGTCACTCGATTCCATAACTTTGTTTGCTTAACCCGGCTACAGACGAG
TTGCCCCCGAAGCATTTGGAGGATCGATCGATTCCATACGTTTCTTGCGC
GTCAGAATGTGTGTGCTTGGAATATATTTCGTCTGTGCTGCTTGCGTACC
TTAGCCTGTTGGTTTCCGTTTTCGGGTGCACGACTTGTTGGTCCTGACTC
TACATGCAGACTATGCTGCGTCGGTCTTAATCGGTCATGCGCTACCCCGT
TGTGTGGGCCATCCTGCCGTCTGTAGCAAACGTTGCCATCGCACGGGACG
GGGCGTGAGCCTCAAGGAGACGCGTGAGGGGTACACAGCTGCAGTGATTG
TACAAATTCGAGGTGCCTCACAGAGGGGGACAGTCGCTATTGCGGAGAGG
CAATTCCAAGCGTTGTTGGGGATGTTTGGGGCACGGGAGCACCACGGCTG
GCACAGCAGTGTACGAACCAACAAGAATACGAACTAGCGCCCATCCTCTT
GCTCTCTCCTCGCAAAGGGCTGATTCCTGACACTCTGCTGTCCACGCTGG
ACGATTCGTTGCCCCCATATTGTTGGTGTTGTTACCCGCCTCCGCAGGAC
CAACGCGCCGTGTTGTTCGCAGAAAAGCGCGACAAGACCGCACAGATGGC
CGAAATGAGACAGGGGCTCCGCCGCTTGCGGCTGGCAGATCGCCTCGGCG
TGGCCCCCCGTGATCTAGCCCAGGAGAGCATCGAGGTTCCCCGCGAGGCT
ACGGGAAGAGTGAGTGCTGAATCGTTCTTGTCACACTCTTCAAGTAAACA
CACACCCTTCGTTTTCCCGTTTCCCGGGTGAGCTGATGCGCGAATTTCTA
CCACGAACGGGTCGACGGGGGCGACGAGGCGTGCACGGGGCGCTCAGCAG
TAGCGGAGAGCACCTGCCCGACGCTGTGCTTCAGAAGGGCGAACGACTAA
GCGTCCTTCTTACGCGCAGTGGGGATCAAGTGTCAGTAGCGCTTCTGAGC
AGAGAGAGGTGTTGCCGCGTGCTTCCAGCCGAAAATAGTGTGAACCTGTC
GAGGGAACCAAAAAGGTTCGTTCTGGGTGAGAAGCCACCTTACTCCTGTC
GACGAGCCTGGTGCTCGCACGGCGAAGAACGGCGTCGGAAACGCCTTGCT
GCCATCCTCAACAACACCTCGCAAGCCTACGTCTGATGGCCTGCTTGTTG
TGCCCAGTGTGGGATAACTAGCATCTTGCCAAATGCGCGATCAGCGACAC
CAGAGCTGCTTCGCTGTTGCTTCAACCTGTATGACGTTTGTACTCCTGCC
AACAAATCTGATTTTACAAAAAGACGGTGGCAACGCCATCTACCAGGAGG
AGTCTTGTTGCCGCCGCCGCCACTGCCGCTGCTGCTGCTGCTGCTGCTGC
TTGTCTGGGCCCACCACCAGAATCTCACGCCGTCTTGGAAACCAAACCTG
CTGCAGGTGATCGGGAAGAAGAGGGCGGCGCTTACGCAGCTGGAGGAAGA
GTGCAGGGTCTCAATCGTCACGGAGAAT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2010052..2012629+

>mRNA_Ecto-sp6_S_contig9.18225.1 ID=mRNA_Ecto-sp6_S_contig9.18225.1|Name=mRNA_Ecto-sp6_S_contig9.18225.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2010052..2012629+ (Ectocarpus species6 EcLAC_371)
ATGGCGCTCGAAGCTCGCTGCGGAGCGATGGAGTTGGAAGTGGACGAATT
GGAAAAGGGCTTGGTCCTGATGAACGACAAGATCGAGGCACTTATCAAGC
GTCTGCCTAAGAGACCAGGCATCAACGGAGATCAGCTTCGGGCGGAGGTA
AGGTCCATCGACACCAAGCTGACCACCACGTCCATGAAGCTGGTGGAAGA
GAAGAACCTCCTCCGCAGGAAGGATAACATCAAGGCCCGCCTCAAAGACC
TGGCCGCCTACGAGTTGGCCCAGCAGGACGTGCAAGCACTAAAGGACCAA
CGCGCCGTGTTGTTCGCAGAAAAGCGCGACAAGACCGCACAGATGGCCGA
AATGAGACAGGGGCTCCGCCGCTTGCGGCTGGCAGATCGCCTCGGCGTGG
CCCCCCGTGATCTAGCCCAGGAGAGCATCGAGGTTCCCCGCGAGGCTACG
GGAAGAGTGATCGGGAAGAAGAGGGCGGCGCTTACGCAGCTGGAGGAAGA
GTGCAGGGTCTCAATCGTCACGGAGAAT
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