mRNA_Ecto-sp6_S_contig9.18224.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18224.1
Unique NamemRNA_Ecto-sp6_S_contig9.18224.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: D7FTS5_ECTSI (Glycos_transf_1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS5_ECTSI)

HSP 1 Score: 1470 bits (3805), Expect = 0.000e+0
Identity = 805/843 (95.49%), Postives = 813/843 (96.44%), Query Frame = 1 
Query:    1 MGGGADKRATGNSFLGATTTCSPEAASEVDFVYGLPPGSATGGCVVQRSFEDDLRAGPGVASVNVHVASDPASAKRVFELLRRQGELEERGVGPPSRVLIIDGIALLFLRDRLHELVGGRGGPWNIVAGFIHCPFSEPFYREEPWLRVALPERMLQDESGAGIRAEERRLFGLLDKVIAVGAPCRTLLTADYGVREEAIVVVEPTFTALAPNVAVAASAXXXXXXXXXXIEAGVVPPAASVDISNERPPRFVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLEVRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSGRAGRGPDSDGGGGIVAGGDGVGLASATEWGQALLRFAHARQRLRIEAERAVPGLAGRFCRAVAADTRGQAVRTLMETTTGRRCTRASCGRSDLPGGYELSNGPTDPSTTTITAVTDQERVRRATVNNALACVCATCVSISGAGGAAAGLAALVAAQCLLLVGLAPPCSPANLVTVFRSFIPPAVVWFMAGSDFGQQVSMADVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAASRKAWRGGFIAGVLRYLFVLATDARELPPSPIGPAGRWVAKIAALASVAALAASVGNGAVRNGGGGGDADTAVFEGTGXXXWWVRGGAEGSSPLLCAVGVAVLCASFSIDFFQIWVLLPREEXXXXXXXXXXXXTNETVGNGSVLGGADEPPSTKAIAAVGEGGAGGEGASKNGLSNITAAIYAAEGSAPSHG 2529
            MGGGADKRATGNSFLGATTTCSPEAA+EVDFVYGLPPGSATGGCVVQRSFEDDLRAGPGVASVNVHVASDPASAKRVFELLRRQGELEERGVG PSRVLIIDGIALLFLRDRLHELVGGRGGPWNIVAGFIHCPFSEPFYREEPWLRVALPERMLQDESGAGIRAEERRLFGLLDKVIAVGAPCRTLLTADYGVREEAIVVVEPTFTA+APNVAVAAS XXXXXXXXXXIEAGVVPPAASVD+SNERPPRFVSVGTLCPRKGQLGLIAALRAACASQPI+LGGSVLTLIGGE ADPSYAEAVRAAA       GA DESRGGAKVEGPGRLEVRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSGR GRGPDSDGGGGIVAGGDGVGLASATEWGQALLRFAHARQRLRIEAERAVPGLA RFCRAVAADTRGQAVRTLMETTTG RCTRASCGRS+L GG+ELSNGPTDPSTTTI AVTDQERVRRATVNNALACVCATCVSISGAGGAA GLAALVAAQCLLLVGLAPPCSPANLVTVFRSFIPPAVVWFMAGSDFGQ VSMADVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAAS+KAWRGGFIAGVLRYLFVLATDARELPPSPIGPAGRWVAKIAALASVAALAASVGNGA+RNGGGGGDADTAVFE TG   WWVRGGAEGSSPLLCAVGVAVLCASFSIDFFQIWVLLPREE  XXXXXXXX  TNETVGNGSVLGGADE PSTKAIAAVGE GAG EGASKN LSNITAAIYAAEGSAPSHG
Sbjct:    1 MGGGADKRATGNSFLGATTTCSPEAANEVDFVYGLPPGSATGGCVVQRSFEDDLRAGPGVASVNVHVASDPASAKRVFELLRRQGELEERGVGSPSRVLIIDGIALLFLRDRLHELVGGRGGPWNIVAGFIHCPFSEPFYREEPWLRVALPERMLQDESGAGIRAEERRLFGLLDKVIAVGAPCRTLLTADYGVREEAIVVVEPTFTAVAPNVAVAAS-XXXXXXXXXXIEAGVVPPAASVDVSNERPPRFVSVGTLCPRKGQLGLIAALRAACASQPIKLGGSVLTLIGGEGADPSYAEAVRAAAATA----GAGDESRGGAKVEGPGRLEVRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSGREGRGPDSDGGGGIVAGGDGVGLASATEWGQALLRFAHARQRLRIEAERAVPGLAERFCRAVAADTRGQAVRTLMETTTGTRCTRASCGRSNLLGGFELSNGPTDPSTTTIPAVTDQERVRRATVNNALACVCATCVSISGAGGAAVGLAALVAAQCLLLVGLAPPCSPANLVTVFRSFIPPAVVWFMAGSDFGQ-VSMADVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAASQKAWRGGFIAGVLRYLFVLATDARELPPSPIGPAGRWVAKIAALASVAALAASVGNGALRNGGGGGDADTAVFERTGGRGWWVRGGAEGSSPLLCAVGVAVLCASFSIDFFQIWVLLPREEAAXXXXXXXXAVTNETVGNGSVLGGADETPSTKAIAAVGEEGAGREGASKNALSNITAAIYAAEGSAPSHG 837
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A6H5L2X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X5_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 8.270e-72
Identity = 121/136 (88.97%), Postives = 124/136 (91.18%), Query Frame = 1 
Query:    1 MGGGADKRATGNSFLGATTTCSPEAASEVDFVYGLPPGSATGGCVVQRSFEDDLRAGPGVASVNVHVASDPASAKRVFELLRRQGELEE-RGVGPPSRVLIIDGIALLFLRDRLHELVGGRGGPWNIVAGFIHCPF 405
            MGGGADKRATGNSFL ATTTCSPEAA EVDFVYGL P SATGGCVVQRSFEDDLRA PGVASVNVHVASD ASAK VF+LLRRQG +EE RG GPPSR LIIDGIALLFLRDRLHELV GRGGPW+IVAGFIHCPF
Sbjct:    1 MGGGADKRATGNSFLRATTTCSPEAAKEVDFVYGLHPSSATGGCVVQRSFEDDLRADPGVASVNVHVASDAASAKSVFDLLRRQGGVEEERGDGPPSRALIIDGIALLFLRDRLHELVAGRGGPWSIVAGFIHCPF 136
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: UPI0007320A72 (glycosyltransferase family 4 protein n=1 Tax=Thiohalocapsa sp. ML1 TaxID=1431688 RepID=UPI0007320A72)

HSP 1 Score: 69.3 bits (168), Expect = 8.320e-9
Identity = 57/170 (33.53%), Postives = 81/170 (47.65%), Query Frame = 1 
Query:  688 IEAGVVPPAASVDISNERPPRFVSVGTLCPRKGQLGLIAAL-RAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLE-VRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWV 1191
            +E G  P   ++    + P R V+VGT+ PRKG L LI AL R       +   GS+       + DP+ A A+R                   A++E  G  E VRLLG LP      H   +D F+L S  E + +A  EA  RG+PVL T  G +A ++PA++ + V
Sbjct:  152 VEPGTEPAPLAMGSGGDGPLRLVAVGTVTPRKGHLLLIEALGRLRHLDWRLDCAGSL-------DRDPTTAAALR-------------------ARIEALGLGERVRLLGELPPAALEPHYARADLFVLASLFEGYGMAYAEALARGLPVLGTTGGAIADTVPADAGLLV 295
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A840P3C8_9ACTN (Phosphatidylglycerophosphate synthase n=1 Tax=Thermocatellispora tengchongensis TaxID=1073253 RepID=A0A840P3C8_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 4.030e-7
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 1 
Query: 1618 SGAGGAAAGLAALVAAQCLLLVGLAPPCSPANLVTVFRSFIPPAVVWFMAGSDFGQQVSMADVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAASRKAWRGGFIAGVLRYLFVLATDARELPPSPIGP--AGRWVAKIAALASVAALA 2106
            +GAG AAA  A LV A   LL        PA +VT+ R+ +   V   +  + F   V  A +   G   +LLD ADG +ARR+ +  T +GA  D+E D+  +L LS  A+  A       G++RY +V A  A     +P+ P  A + VA +  +  VAA A
Sbjct:   43 AGAGYAAALSALLVRA---LLRSGERSLGPAGIVTLVRAELAGGVTALVVSAAFAPGVPRAPIVALGAAVLLLDWADGQVARRTGT-ETALGARFDMEVDAFLILVLSAYAAASAGPWALAIGLMRYAWVAAGRAAPWLRAPLPPSLARKAVAAVQGIVLVAAAA 203
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A5K1I5K0_9GAMM (D-inositol 3-phosphate glycosyltransferase n=1 Tax=Halomonas lysinitropha TaxID=2607506 RepID=A0A5K1I5K0_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 2.970e-6
Identity = 75/284 (26.41%), Postives = 112/284 (39.44%), Query Frame = 1 
Query:  376 IVAGFIHCPFSEPFYREEPWLRV-ALPERMLQDESGA------GIRAEERRLFGLLDKVIAVGAPCRTLLTADYGVREEAIVVVEPTFTALAPNVAVAASAXXXXXXXXXXIEAGVVPPAASVDISNERPPRFVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLEVRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSGRA 1206
            ++ G       +   R    LR+ AL    L DE+G       G R  E R      +V+         L  DYGV E+ + V EP                         ++   +   A   +   RP R + V TL PRKG LG++    A    +P      V  ++G  E D  +A A+ A             E+R   +++   RL+   +G    +E  E    +D F+L S  E + +   EA  RG+PV++T  G LA +LP E+ I V  G A
Sbjct:   75 VIDGLAMGGLPDEVERHAELLRIIALVHHPLADETGLDVAQQKGFRDSETRALAAARRVVVTSHHTARALR-DYGVPEDRLRVAEP------------------------GVDKAALAGGALDHVDRSRPWRLLCVATLTPRKG-LGVLVEALAGLTDRPW-----VCKVVGSHERDAEHAAALMA-------------ETR---RLDMAERLD--FVGERNADELAEAYRQADLFVLPSFYEGYGMVVTEALSRGLPVITTTGGALADTLPPEAGIAVPPGDA 309
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A3N5GNP8_9BURK (Glycosyltransferase family 1 protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5GNP8_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 8.580e-6
Identity = 48/142 (33.80%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:  751 FVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLE-VRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPA 1173
             + V TL PRKG L L+ AL        ++     L  +G    DPS+A AV                    A++E     E V + G L R     H+  +DAF+L S  E + +A  EA  RG+PV+ TRVG +AQ++PA
Sbjct:  181 LLCVATLTPRKGHLQLLDAL------WRVRDRRWTLHCVGSAMRDPSHARAVA-------------------ARIEALALAERVTIEGELDRASLDRHLAQADAFVLASVYEGYGMAFAEALARGLPVIGTRVGAIAQTVPA 297
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: UPI000DF38905 (glycosyltransferase family 4 protein n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF38905)

HSP 1 Score: 58.5 bits (140), Expect = 2.800e-5
Identity = 53/155 (34.19%), Postives = 72/155 (46.45%), Query Frame = 1 
Query:  745 PRFVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLEVRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSGRAG 1209
            P+ +S+GTL PRKG   LI AL AA    P +L      L G +  DP+ A A+RAA                GA + G     V + G L          +SD F+  S  E + +A  EA  RG+PV++T  G LA+ +P  +   V  G AG
Sbjct:  182 PQLLSLGTLTPRKGHHLLIGAL-AALTDLPWRL-----VLAGSDSRDPACAAALRAAVA--------------GAGLAG----RVTITGELDEAGLARLWASSDLFVFPSLHEGYGMAAAEALARGLPVVTTTAGALAEVVPPGAGALVPPGDAG 312
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A1B1UBV1_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A1B1UBV1_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 6.130e-5
Identity = 54/161 (33.54%), Postives = 76/161 (47.20%), Query Frame = 1 
Query:  709 PAASVDISNERPPRFVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLEVRLLGPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWV 1191
            P  +   SN+   R +S+G++ P KG   LIAAL  A A  P +L     T+ G    DP  A  + A         G  D               V +LG +P E  +E   ASD F+L S  E + +A  EA   G+PV+STRVG +  ++PAE+ + V
Sbjct:  165 PVPAAPGSNDDVVRLLSIGSVVPDKGYDLLIAAL-IALADLPWRL-----TIAGDRTRDPVAAAQLDA----DIQACGLGDR--------------VTVLGAVPVERIIELYLASDIFVLASRFEGYGMALAEAIGHGLPVVSTRVGAIPDTVPAEAGLLV 301
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A8J3ZUK0_9ACTN (Membrane protein n=2 Tax=Virgisporangium ochraceum TaxID=65505 RepID=A0A8J3ZUK0_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 7.950e-5
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1 
Query: 1705 PANLVTVFRSFIPPAVVWFMAGSDFGQQVSMADVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAASRKAWRGGFIA--GVLRYLFVLAT 2016
            PAN VT+ R+     V   +A +  G+ V +A + V   + +LLD ADG +ARR+ S  T +GA  D+E D+  +L LS+  ++  + GG++   G LRY+FV A+
Sbjct:  103 PANAVTLTRATFVGGVAAIVADTA-GRAVPVAALAVLASVALLLDAADGFVARRTGSS-TALGARFDMEVDAFLILVLSVFVAQ--FLGGWVLAIGALRYVFVAAS 204
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BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Match: A0A2T0VPA8_9GAMM (Glycosyl transferase family 4 n=3 Tax=Halomonas ventosae TaxID=229007 RepID=A0A2T0VPA8_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 8.980e-5
Identity = 90/336 (26.79%), Postives = 121/336 (36.01%), Query Frame = 1 
Query:  226 RVFELLRRQGELEERGVGPPSRVLIIDGIALLFLRDRLHELVGGRGGPWNIVAGFIHCPFSEPFYREEPWLR-VALPERMLQDESGAGI------RAEERRLFGLLDKVIAVGAPCRTLLTADYGVREEAIVVVEPTFTALAPNVAVAASAXXXXXXXXXXIEAGVVPPAASVDISNERPPRFVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAEAVRAAAXXXXXXXGASDESRGGAKVEGPGRLEVRLL--GPLPREETLEHVGASDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSGRA 1206
            R+   LRRQG   E  VG   R  + D  A   L   L  L       W ++ G       E   R    LR VAL    L +E+G  +      R  E R      +VI   A     +   YGV  E + V EP                         +E   +   A  D +   P R + V TL PRKG  GL+ AL        +Q     L +IG    DP++A  +   A                        L  RL+  G    +        +D F+L S  E + +   EA  RG+PV++T  G LA +LP E+ I V  G A
Sbjct:   34 RMAAELRRQGWRVEV-VGLEGRFPLADRRARHSLATTLGRLPDDA---WVVIDGLAMGGLPEEVERHAARLRIVALVHHPLAEETGLDLAEQRTFRESEARALAAARRVIVTSAHTARAMPG-YGVPGERVRVAEP------------------------GVEPAPLAAGALDDRAATPPWRLLCVATLTPRKGHDGLLEALAG------LQDRDWTLEVIGSHSRDPAHAARLLETARRHG--------------------LTSRLVWAGERDADALAAAYHRADLFVLPSLYEGYGMVVTEALSRGLPVITTTGGALADTLPPEAGIAVPPGDA 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FTS5_ECTSI0.000e+095.49Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
A0A6H5L2X5_9PHAE8.270e-7288.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0007320A728.320e-933.53glycosyltransferase family 4 protein n=1 Tax=Thioh... [more]
A0A840P3C8_9ACTN4.030e-734.55Phosphatidylglycerophosphate synthase n=1 Tax=Ther... [more]
A0A5K1I5K0_9GAMM2.970e-626.41D-inositol 3-phosphate glycosyltransferase n=1 Tax... [more]
A0A3N5GNP8_9BURK8.580e-633.80Glycosyltransferase family 1 protein n=1 Tax=Burkh... [more]
UPI000DF389052.800e-534.19glycosyltransferase family 4 protein n=1 Tax=Oleis... [more]
A0A1B1UBV1_9BRAD6.130e-533.54Uncharacterized protein n=1 Tax=Bradyrhizobium ice... [more]
A0A8J3ZUK0_9ACTN7.950e-537.74Membrane protein n=2 Tax=Virgisporangium ochraceum... [more]
A0A2T0VPA8_9GAMM8.980e-526.79Glycosyl transferase family 4 n=3 Tax=Halomonas ve... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2003140..2009578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score73.6
Seed ortholog evalue5.1e-10
Seed eggNOG ortholog426117.M446_4785
Model size2532
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.PFAM glycosyl transferase group 1
EggNOG OGs1JWXN@119045,1P81Z@1224,2U314@28211,COG0438@1,COG0438@2
Ec32 ortholog descriptionGlycosyl transferase, family 1
Ec32 orthologEc-14_001010.1
Cds size2532
COG Functional cat.H
Best tax levelMethylobacteriaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350538.2795227-CDS-Ecto-sp6_S_contig9:2003139..20037121682350538.2795227-CDS-Ecto-sp6_S_contig9:2003139..2003712Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2003140..2003712 -
1682350538.2890363-CDS-Ecto-sp6_S_contig9:2004192..20043661682350538.2890363-CDS-Ecto-sp6_S_contig9:2004192..2004366Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2004193..2004366 -
1682350538.2971077-CDS-Ecto-sp6_S_contig9:2004969..20063471682350538.2971077-CDS-Ecto-sp6_S_contig9:2004969..2006347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2004970..2006347 -
1682350538.3051732-CDS-Ecto-sp6_S_contig9:2006847..20072301682350538.3051732-CDS-Ecto-sp6_S_contig9:2006847..2007230Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2006848..2007230 -
1682350538.3128045-CDS-Ecto-sp6_S_contig9:2009554..20095781682350538.3128045-CDS-Ecto-sp6_S_contig9:2009554..2009578Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2009555..2009578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18224.1prot_Ecto-sp6_S_contig9.18224.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2003140..2009578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18224.1

>prot_Ecto-sp6_S_contig9.18224.1 ID=prot_Ecto-sp6_S_contig9.18224.1|Name=mRNA_Ecto-sp6_S_contig9.18224.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=844bp
MGGGADKRATGNSFLGATTTCSPEAASEVDFVYGLPPGSATGGCVVQRSF
EDDLRAGPGVASVNVHVASDPASAKRVFELLRRQGELEERGVGPPSRVLI
IDGIALLFLRDRLHELVGGRGGPWNIVAGFIHCPFSEPFYREEPWLRVAL
PERMLQDESGAGIRAEERRLFGLLDKVIAVGAPCRTLLTADYGVREEAIV
VVEPTFTALAPNVAVAASAPAAAAAAAAAIEAGVVPPAASVDISNERPPR
FVSVGTLCPRKGQLGLIAALRAACASQPIQLGGSVLTLIGGEEADPSYAE
AVRAAAAAAAATAGASDESRGGAKVEGPGRLEVRLLGPLPREETLEHVGA
SDAFLLNSCSESWAVAPVEAALRGVPVLSTRVGWLAQSLPAESTIWVGSG
RAGRGPDSDGGGGIVAGGDGVGLASATEWGQALLRFAHARQRLRIEAERA
VPGLAGRFCRAVAADTRGQAVRTLMETTTGRRCTRASCGRSDLPGGYELS
NGPTDPSTTTITAVTDQERVRRATVNNALACVCATCVSISGAGGAAAGLA
ALVAAQCLLLVGLAPPCSPANLVTVFRSFIPPAVVWFMAGSDFGQQVSMA
DVTVFGVLFVLLDVADGILARRSKSGPTRVGAALDVESDSIAVLFLSLAA
SRKAWRGGFIAGVLRYLFVLATDARELPPSPIGPAGRWVAKIAALASVAA
LAASVGNGAVRNGGGGGDADTAVFEGTGGGGWWVRGGAEGSSPLLCAVGV
AVLCASFSIDFFQIWVLLPREEAAAAAAAAASVVTNETVGNGSVLGGADE
PPSTKAIAAVGEGGAGGEGASKNGLSNITAAIYAAEGSAPSHG*
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mRNA from alignment at Ecto-sp6_S_contig9:2003140..2009578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18224.1 ID=mRNA_Ecto-sp6_S_contig9.18224.1|Name=mRNA_Ecto-sp6_S_contig9.18224.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6439bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2003140..2009578- (Ectocarpus species6 EcLAC_371)
ATGGGAGGTGGAGCCGACAAGAGGGTGAGTTGATCTTACCGCCTGCAAGA
GCGCCTGTTCTGCTTTGAATTTGTTTGGACGGGAAGATACGGCGAATTGC
AGGATGAGCCACCGCACCCAGGGCACACTACACCCTTCATGGCTATACCC
CTCAATCCCAGCCCCATGGAACAAGAGATGGAAGAGAGACGGGGATACAA
GGTGAACGATCGATCATGATAAAGACCATTGCTACGCTGTAGGCTACAAT
GGATGTGGTGCCGCGGCTCGAAGGCGACAACAAACTGCTGTAACTTTGAT
GCCACAATCCGCTCAATATATTTCCACATGAATCTATCTCATGCTCCTCA
CATGTGTGTTCTCCTCATGTCTGCACCATCTGCCATGTTTTACTCGCCGA
CAAGCAGCACGCCCTGTTGTTTGTAGTGTGATGTCCAGAAAATCCCCTCT
CGGTTCTGCATATAGACCAGATGCTTACATCTGTAAGTGTAAACCAGGAC
GACAAAAAGTACAACTTATTTCCACATCAGGAAACAAACGCAAAGCCGGG
TTGTGAACCTGTTTGCGGGACGCTCGGGCAGGGTGCGGTCTCAACTTGCT
CCCGAAACACCACTTTTGACACTCACTTGATGCGCGCATACGTCTAGTAG
TGTGAATCCCCATGGTATCGGTCTGCATACATTCACGCGTTTCCGTATTT
TGTTTGAGCCATACATCACGACCCGAGGGTCGTGTGTGGTACGGACGGCC
CGAGAGGCCCACTGCTGTAGTCATGCGCGAGACGAAAACCTTTTTTATTC
CGCCCACTAGTCATAGATGTGCGATTGCCCGAAGTCCCTGGCATTGTTGT
CTTTTACTCGAAACTCGAAACTGAAGTAGCACCCCTCAAACGATCTTCTC
TCCTCTATCAGGTATGTATGTAGGAGGCCAGGACGCAGCATTCCAAAGCA
GTACAGACAGGCGTACAGGCGCACATGCAAGTACAACATAAATGCAGATA
GAGATGGATTCGTGGTGTCATATTAAGGAATAATAAAAACACACACAGAA
AGACTACCCATTCGAGATATACCCACAGTCGAACGGGATGTGGTGGAATC
TTTTCAGTGAGTGGAGGGAAACCGGCTGGGTACTGGACTTATTTCGAGCC
TTTTATTACGAAAATAAAAAAAACTGTGAGAACCGCCCGCCTCTTGAGGG
GACGGACGAATGGGGCCCCCACAGGAAGATAGGAGGAACAAACCTAGGGG
AACATTCTGGGATATTTCCCGCAGGAACTGCGAACAGCTTTTTTGTTTGT
TGAGTTCGGTATTTTGGGGAGTTCGGTGGCAAGACGCGTCCGCGAAGTCG
CGCTCCGCTCCCAACCCCAACCCACCCTTCTGTCTGTCTGAACACATCCA
TTCGATTATTCGCCACATGAGCCAGGGGGAACTGTGTATGTATCAGTATG
CCTCCGCTGGCGGTCGTATCACATCATCTACAAAGACTCCAACACATCCC
GTGTATCTCGAATGGGTACTTGTAGTCTTTCTGTGTGTTTGTTTTTCCTA
ATACCTCATGTCGGGACTCATCTTGCGCTTTGTGTGGAACAGACGATGAA
GAGGTAGGTGTCTCTTGTACTGCTGTATGTTTGTGTGGGCCTCACATCTA
TTTTGCCGCCCATTCTACACACAATAATTTTTGTGTGTGACTTATCAGCC
GGGGCCACATAGCAGGAAGGTCAGACGTATGGATACAAATTCCGAAGGGT
TCAGCCGACCGAGGTGAAATCGAAGATCTGCAGTCTCTGCTCACACGAAT
CAATTATTTTCCACCTTTCTTTACGAAAATATACGAGGAAAAATCCTCCG
CAGGTAGGTATCGAGACCTTCATACGAAGTATTAGTAAGTTTAAGTAGGG
TCAGCAGTAAATAATGTAATTATTAATGTTATCAACTAAAGACTAAAGAC
ACTCCTGTAGACAATGTCCCGCCTTGTACTCTGCTACTTGGTCCGTCCGC
GTCTCTTTCTCAAGTTTCGGGTTTTCAGCGCAGGGTGTTGTTGTGGAAAC
GTTTCCATAGCCAAATATGCATGGATAGCGTTAGTGCCGAAGTTCACGTT
TCGTTAGTAGTGCAGTAGTGCAGATGGTACGGACGAATTGTTCATCGGCC
GCAATCACAACTCTCCCGCCGACGCGCTGTGTTCATTAGAAAGTAGTGCC
TCCTCTTGCCTTGCTCACCTAATCATAGGCGACCCTGACAGAGACACACG
TTGCGCATACAATAAATTGGCTCTATTGGGGGAGGCTCTACGGTTCACTC
ATGGTGTGACGAGCACTCCCGCTCCCCGCTTGTATCTACCTCGACCAGGC
TACGGGGAATTCCTTCCTCGGAGCGACCACCACGTGCTCGCCGGAAGCAG
CGAGTGAGGTCGACTTCGTCTACGGCCTCCCTCCCGGTAGCGCGACCGGC
GGCTGTGTTGTCCAGAGGTCGTTCGAGGACGATCTCCGCGCTGGTCCCGG
CGTCGCTTCGGTAAACGTGCACGTTGCCTCGGACCCGGCGTCCGCGAAAC
GCGTATTCGAGCTTCTAAGGCGGCAAGGAGAACTGGAGGAGAGGGGTGTC
GGGCCGCCCTCGCGAGTCCTTATCATCGACGGCATTGCTCTCCTCTTCTT
GCGGGATCGGCTGCACGAGCTGGTGGGGGGGCGTGGGGGGCCGTGGAATA
TTGTGGCCGGGTTTATCCACTGCCCTTTCAGGTGATTTACATTTTTTTTT
CGCCGTCATTTCGCCGTAGCGGGGCCGCAATAAATTGCTGTCAGCAGTTT
TTCCGCTCACAATGCTTCAGCTAGCAGTGAAGCAGAACAAGGGGGGAGGC
AAGGGGGGTGGAGGTTGGAAGTTATCCGAATGGATTTTCATTTTGTTTCT
CGAGATGATGGCATGTCCGGATCAGGCCGGGTTTCCTTACGAGACAAATG
GAACGGATTTCATACTCCTTCTCTTTACTGCACAAGCAATCCGCGCAATA
CGTGCCGCGGACGCGCGTTCCGGTAGCTGTCGCAATGTGGGAAAATACGC
TCTCGTTGCGATGTCTTTTTCTCGCCCGTTTCTTCTGTTGTCGGCGACCC
CCAATAGTATCTTCCCTTGTTCCCTTTCAATCAAAAACACGGAAATGCTC
ATGGTTTGTGGCGAATGGACGCTTGCCTCCGACCCCCCCTCGTTGCGATG
CCGGATTGTTGTTATCATGACGTGCCGGTAGCGAGCCTTTCTACCGCGAG
GAACCTTGGCTTAGAGTCGCGCTTCCCGAGCGCATGCTCCAGGACGAGAG
CGGCGCGGGTATCCGCGCGGAGGAGCGTCGACTCTTCGGCCTGTTGGACA
AGGTCATCGCCGTAGGAGCGCCCTGCCGCACCCTCTTGACGGCCGACTAC
GGCGTGCGGGAAGAAGCTATCGTCGTCGTCGAGCCCACGTTTACCGCGTT
GGCACCGAACGTCGCTGTGGCCGCTTCTGCTCCCGCCGCAGCCGCCGCCG
CCGCTGCTGCCATCGAAGCGGGTGTCGTGCCTCCAGCCGCTTCGGTTGAC
ATCTCGAACGAGCGTCCTCCAAGGTTCGTGTCAGTCGGCACCCTGTGCCC
TCGGAAGGGCCAGCTCGGTCTTATCGCCGCCCTCAGGGCCGCCTGCGCCT
CACAGCCGATACAACTAGGCGGCTCCGTGCTCACGCTCATCGGCGGCGAG
GAGGCCGATCCCTCTTACGCCGAGGCCGTCAGGGCGGCGGCGGCGGCGGC
GGCGGCAACCGCCGGGGCCAGCGATGAGAGTAGAGGAGGCGCCAAAGTAG
AAGGACCGGGACGGTTGGAGGTGCGGCTGCTAGGGCCCTTGCCGCGGGAG
GAGACCCTCGAGCACGTGGGCGCGAGCGACGCCTTCTTGTTGAACTCCTG
TTCCGAGAGCTGGGCCGTGGCTCCGGTAGAAGCGGCCCTGCGCGGGGTGC
CGGTGCTCTCCACGCGGGTCGGTTGGTTGGCTCAGTCTTTACCCGCCGAG
TCGACTATATGGGTTGGTTCGGGCCGGGCCGGGCGAGGACCTGATTCCGA
CGGCGGCGGGGGTATCGTCGCCGGCGGTGACGGGGTCGGGCTTGCGTCGG
CGACCGAGTGGGGACAAGCGCTTCTCCGGTTTGCGCACGCCCGGCAGCGG
TTGAGAATCGAGGCGGAGCGTGCGGTGCCGGGCCTCGCTGGGCGGTTCTG
CCGAGCGGTGGCGGCGGACACGCGAGGCCAAGCCGTCCGAACTCTCATGG
AAACAACGACGGGGAGAAGGTGCACCCGTGCTTCTTGCGGCCGTTCTGAT
CTCCCAGGGGGATATGAGCTGTCGAACGGACCTACTGACCCTTCGACCAC
CACCATTACAGCCGTCACAGATCAAGAGCGAGTGAGAAGGGCCACAGTGA
ACAACGCGCTCGCTTGCGTGTGCGCGACCTGCGTCTCGATCAGCGGCGCC
GGCGGCGCGGCGGCAGGCCTCGCGGCCCTGGTCGCTGCGCAGTGCCTACT
GCTTGTCGGACTGGCCCCGCCTTGCTCGCCGGCAAACCTCGTCACCGTTT
TTCGGAGCTTCATTCCGCCGGCGGTGGTGTGGTTCATGGCTGGGTCGGAT
TTCGGCCAGGTGAGAGAACGAGAGACGCGGGAGAGAGACAGACAGAGAGA
GAGAGGGCGAAGGAGAGAAAACACCAGAGTAGCTCCGCGTGTGCACGTTC
GATGCGTGAAGCCTACAGGGCGTGCTGTGAGCTATCAACGGCAATAGCGG
ACTTTGAAAATGGCACTTTTTCATCGTGCTTTTCCTTTTCTCTCCTGGAG
GGATCTCTCCTTTCACTCTTGCTCTTGTATCAGGACCGGATGTGAGTGAG
GCTCCTGCAGCGTTGTTTTTGTTTTTTATCCCGCAGAGAGAGGGAACCAC
GATGTTCCAAACAATCAATATGGTGGCTAGATGACCCAGCCCCCGTACAT
GGCATCATCGTGGTTTTACCACCCTCACAACCTTGCATACTGATTATTTC
GCCTACCCTCGCATGTGACCCCAAGCATCACCGTTCTTCATGCAGGCACC
AGTATGCACGGCGTGCCGTCGGTGTTGACCGGAATAGTGGCGTGCGCCAC
TATTAGAAACGCCCCCCGCTCACCTCCATCTTTTTCGTGGACATGGCGAC
CAAATGTGCATGAAACCCCGCTGCGTTTCGTTCCCGACGCGCGCTTGCCT
GCTGCTATGGAGCAGGTGTCGATGGCTGACGTGACTGTCTTCGGAGTGCT
TTTCGTGCTGCTCGACGTGGCGGACGGTATCCTGGCGCGGCGATCGAAGT
CTGGGCCCACGCGCGTCGGAGCGGCTCTTGATGTCGAGAGCGATTCCATC
GCCGTGCTGTTCCTGAGCCTTGCGGCTAGCCGGAAGGTTGGTTGGAGTGT
TCTCATCGGCTATTTTCGAAGGAGCATGTCATCATTCGAACAGCATCATG
ATCTTTCAGCGGTCGAAACCCACAGCCGGTATGTGTAAGTCTTGTTGGTG
GGCAAGAAAACACCTGACTTCCTTCCACCAGTGTCCATGAACCATGTTCA
AGAAAGCTTATGCCGGTATTATGAAACCCGGCGATTGGCGGCGTCGAGTA
TGCCCGCACCGCAGCACTTTTGTAGATTCATCCCGACCCGTATTTTTGGT
TTCAGGGGAAAGCGCTTCGTCGCTAAGCGGGATGATCCCAACACCAATCA
AGCCTGCCACCACCCCCCACCGCGCCCACCCACCCGCTCATCACGACATC
TACCCGCGTTTTTATTTTTTCGCCATGGTGCATAAAAACAAGACGTGTAG
CTAAGAGCCCCCCCCCCCGTCATATTTGCCATTTCGTGTCCCCCCCGCTC
CGTCCCTCTTGTGCAGGCGTGGCGTGGGGGGTTTATCGCAGGCGTCCTCC
GGTACCTTTTTGTGTTGGCTACCGACGCTCGCGAGCTCCCGCCCTCGCCC
ATTGGCCCCGCCGGGCGGTGGGTCGCCAAAATCGCCGCTCTTGCGAGCGT
TGCTGCTCTTGCGGCCTCCGTCGGAAACGGCGCCGTAAGGAACGGCGGCG
GCGGCGGGGATGCCGACACGGCGGTGTTTGAGGGAACCGGAGGGGGGGGT
TGGTGGGTGCGGGGAGGGGCGGAGGGTTCTTCCCCTTTGCTGTGCGCGGT
CGGAGTGGCCGTGTTGTGCGCGTCATTTTCGATCGACTTCTTTCAGATTT
GGGTCCTGTTGCCGCGCGAGGAGGCGGCGGCAGCGGCGGCGGCGGCAGCG
AGCGTGGTCACGAATGAAACCGTCGGGAACGGCAGCGTCCTCGGAGGGGC
AGACGAACCCCCCTCGACCAAGGCGATCGCCGCCGTCGGCGAGGGGGGGG
CGGGGGGGGAGGGCGCCAGCAAGAACGGCCTCAGCAACATAACGGCGGCG
ATATATGCCGCCGAAGGGAGTGCACCTAGCCACGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2003140..2009578-

>mRNA_Ecto-sp6_S_contig9.18224.1 ID=mRNA_Ecto-sp6_S_contig9.18224.1|Name=mRNA_Ecto-sp6_S_contig9.18224.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2532bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2003140..2009578- (Ectocarpus species6 EcLAC_371)
ATGGGAGGTGGAGCCGACAAGAGGGCTACGGGGAATTCCTTCCTCGGAGC
GACCACCACGTGCTCGCCGGAAGCAGCGAGTGAGGTCGACTTCGTCTACG
GCCTCCCTCCCGGTAGCGCGACCGGCGGCTGTGTTGTCCAGAGGTCGTTC
GAGGACGATCTCCGCGCTGGTCCCGGCGTCGCTTCGGTAAACGTGCACGT
TGCCTCGGACCCGGCGTCCGCGAAACGCGTATTCGAGCTTCTAAGGCGGC
AAGGAGAACTGGAGGAGAGGGGTGTCGGGCCGCCCTCGCGAGTCCTTATC
ATCGACGGCATTGCTCTCCTCTTCTTGCGGGATCGGCTGCACGAGCTGGT
GGGGGGGCGTGGGGGGCCGTGGAATATTGTGGCCGGGTTTATCCACTGCC
CTTTCAGCGAGCCTTTCTACCGCGAGGAACCTTGGCTTAGAGTCGCGCTT
CCCGAGCGCATGCTCCAGGACGAGAGCGGCGCGGGTATCCGCGCGGAGGA
GCGTCGACTCTTCGGCCTGTTGGACAAGGTCATCGCCGTAGGAGCGCCCT
GCCGCACCCTCTTGACGGCCGACTACGGCGTGCGGGAAGAAGCTATCGTC
GTCGTCGAGCCCACGTTTACCGCGTTGGCACCGAACGTCGCTGTGGCCGC
TTCTGCTCCCGCCGCAGCCGCCGCCGCCGCTGCTGCCATCGAAGCGGGTG
TCGTGCCTCCAGCCGCTTCGGTTGACATCTCGAACGAGCGTCCTCCAAGG
TTCGTGTCAGTCGGCACCCTGTGCCCTCGGAAGGGCCAGCTCGGTCTTAT
CGCCGCCCTCAGGGCCGCCTGCGCCTCACAGCCGATACAACTAGGCGGCT
CCGTGCTCACGCTCATCGGCGGCGAGGAGGCCGATCCCTCTTACGCCGAG
GCCGTCAGGGCGGCGGCGGCGGCGGCGGCGGCAACCGCCGGGGCCAGCGA
TGAGAGTAGAGGAGGCGCCAAAGTAGAAGGACCGGGACGGTTGGAGGTGC
GGCTGCTAGGGCCCTTGCCGCGGGAGGAGACCCTCGAGCACGTGGGCGCG
AGCGACGCCTTCTTGTTGAACTCCTGTTCCGAGAGCTGGGCCGTGGCTCC
GGTAGAAGCGGCCCTGCGCGGGGTGCCGGTGCTCTCCACGCGGGTCGGTT
GGTTGGCTCAGTCTTTACCCGCCGAGTCGACTATATGGGTTGGTTCGGGC
CGGGCCGGGCGAGGACCTGATTCCGACGGCGGCGGGGGTATCGTCGCCGG
CGGTGACGGGGTCGGGCTTGCGTCGGCGACCGAGTGGGGACAAGCGCTTC
TCCGGTTTGCGCACGCCCGGCAGCGGTTGAGAATCGAGGCGGAGCGTGCG
GTGCCGGGCCTCGCTGGGCGGTTCTGCCGAGCGGTGGCGGCGGACACGCG
AGGCCAAGCCGTCCGAACTCTCATGGAAACAACGACGGGGAGAAGGTGCA
CCCGTGCTTCTTGCGGCCGTTCTGATCTCCCAGGGGGATATGAGCTGTCG
AACGGACCTACTGACCCTTCGACCACCACCATTACAGCCGTCACAGATCA
AGAGCGAGTGAGAAGGGCCACAGTGAACAACGCGCTCGCTTGCGTGTGCG
CGACCTGCGTCTCGATCAGCGGCGCCGGCGGCGCGGCGGCAGGCCTCGCG
GCCCTGGTCGCTGCGCAGTGCCTACTGCTTGTCGGACTGGCCCCGCCTTG
CTCGCCGGCAAACCTCGTCACCGTTTTTCGGAGCTTCATTCCGCCGGCGG
TGGTGTGGTTCATGGCTGGGTCGGATTTCGGCCAGCAGGTGTCGATGGCT
GACGTGACTGTCTTCGGAGTGCTTTTCGTGCTGCTCGACGTGGCGGACGG
TATCCTGGCGCGGCGATCGAAGTCTGGGCCCACGCGCGTCGGAGCGGCTC
TTGATGTCGAGAGCGATTCCATCGCCGTGCTGTTCCTGAGCCTTGCGGCT
AGCCGGAAGGCGTGGCGTGGGGGGTTTATCGCAGGCGTCCTCCGGTACCT
TTTTGTGTTGGCTACCGACGCTCGCGAGCTCCCGCCCTCGCCCATTGGCC
CCGCCGGGCGGTGGGTCGCCAAAATCGCCGCTCTTGCGAGCGTTGCTGCT
CTTGCGGCCTCCGTCGGAAACGGCGCCGTAAGGAACGGCGGCGGCGGCGG
GGATGCCGACACGGCGGTGTTTGAGGGAACCGGAGGGGGGGGTTGGTGGG
TGCGGGGAGGGGCGGAGGGTTCTTCCCCTTTGCTGTGCGCGGTCGGAGTG
GCCGTGTTGTGCGCGTCATTTTCGATCGACTTCTTTCAGATTTGGGTCCT
GTTGCCGCGCGAGGAGGCGGCGGCAGCGGCGGCGGCGGCAGCGAGCGTGG
TCACGAATGAAACCGTCGGGAACGGCAGCGTCCTCGGAGGGGCAGACGAA
CCCCCCTCGACCAAGGCGATCGCCGCCGTCGGCGAGGGGGGGGCGGGGGG
GGAGGGCGCCAGCAAGAACGGCCTCAGCAACATAACGGCGGCGATATATG
CCGCCGAAGGGAGTGCACCTAGCCACGGCTAA
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