mRNA_Ecto-sp6_S_contig9.18209.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18209.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE) HSP 1 Score: 603 bits (1556), Expect = 6.360e-203 Identity = 723/762 (94.88%), Postives = 731/762 (95.93%), Query Frame = 1
Query: 1 MRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEALDIMQRMRARGLQPNSYCVSSAXXXXXXXXXXXXXXXXXXXRREDLGEGSPVDEXXXXXXXXXXXXXXXXXXXXXXXXELKVGGKTPHPFXXXXXXXXXXXXXXXXXXXXXXXXMRQARVRTDGFIDVYCVKATITALAKSGKWKQALKIYLEMLDALPANSDAPEANLNLDALRDASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDMDGPPGVSPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALRACVSSPPDGSNARKAKELLEEARGAEIALNWRSYNCAIIAAAKAGEVDEALARLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMIAAGVAMKAGVAGKVASETMTGREGAERALELLERGVEAPGSDASAASP 2286
MRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEALDI+QRMRARGLQPNSYCVSSAXXXXXXXXXXXXXXXXXXXRREDLGEGSPVDEXXXXXXXXXXXXXXXXXXXXXXXXELKVGGKTPHPFXXXXXXXXXXXXXXXXXXXXXXXXMRQARVRTDGFIDVYCVK TITALAKSGKWKQALKIYLEMLD LPANSD+PEANLNLDALRDAS ACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRN+QWERAT LIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDM G PGVSPNP SYQ LLEEVKAAS TRPELA SKLYASAL+ACVSSPPDGS ARKAKELLEEA+GA IALNWRSYNCAIIAAAKAGEVDEALARLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MIAAGV MKAGVAGKVA+ETM+GR+GAERALELLERGVEAPGSDASAASP
Sbjct: 52 MRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAXXXXXXXXXXXXXXXXXXXRREDLGEGSPVDEXXXXXXXXXXXXXXXXXXXXXXXXELKVGGKTPHPFXXXXXXXXXXXXXXXXXXXXXXXXMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEMLDVLPANSDSPEANLNLDALRDASFACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNRQWERATCLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDMVGAPGVSPNPGSYQXXXXXXXXXXXXXXXXXLLEEVKAASKTRPELALCSKLYASALQACVSSPPDGSIARKAKELLEEAQGAGIALNWRSYNCAIIAAAKAGEVDEALARLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIAAGVVMKAGVAGKVAAETMSGRKGAERALELLERGVEAPGSDASAASP 813
BLAST of mRNA_Ecto-sp6_S_contig9.18209.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 8.290e-7 Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 13 DWRGVLRELQIAEEAS----DAQP-----SESRITTFMYASCISRMAKARRWEEALDIMQRMRARGLQPNSYCVSS 213
+WRGV+REL+ AE A +A+ S+ R+++ Y SC+ +AK RW EAL + +RM ARG+ PNS+C+++
Sbjct: 125 NWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNA 200
BLAST of mRNA_Ecto-sp6_S_contig9.18209.1 vs. uniprot
Match: A0A812XWW3_SYMPI (PTAC2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XWW3_SYMPI) HSP 1 Score: 59.3 bits (142), Expect = 2.210e-5 Identity = 37/138 (26.81%), Postives = 63/138 (45.65%), Query Frame = 1
Query: 643 PEANLNLDALRDASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEM---------TLTYGMVP--------------------DLETYQVAISAAGCASLWPKATKMLRQMRQNGL 969
P+ + D + A L C A W+A+L LL M V +TP+ GC+ AA+++C QW A ++ D+ TL++ + DL+ + AIS+ A+ W ++ +L +MR+ L
Sbjct: 175 PKLHPGADIFQHAILGCDDACKWEAALTLLASMPKVKVTPDEGCFDAAIRACATVGQWILALNVFDKAVSLDKARASTLSFMLTACRTGAQWELALQLLFGPFQSDLDCFDAAISSCRVAAAWRESVSLLAEMRRRSL 312
BLAST of mRNA_Ecto-sp6_S_contig9.18209.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 6.920e-5 Identity = 51/201 (25.37%), Postives = 76/201 (37.81%), Query Frame = 1
Query: 529 DVYCVKATITALAKSGKWKQALKIYLEMLDALPANSDAPEANLNLDALRD----------------------------ASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQ-------------------------------WERATSLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQM 954
++Y A ITALA+ G+W+QAL I M + A A A ++ D A ACG G+W+ +L LL MR + Y AA +CV +++ W L++EM G+ PD+ T+ AI+A G A W +A +L +M
Sbjct: 273 NIYMYNACITALARCGRWRQALAILDHMRFSANAAEAAAAATVDTALKADPAAGVDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGVVS----YNAAAHACVGDQRKIGETRINGNNGVAEQRGRAAEEXXXXXEEGWAIVLGLMEEMRAE-GVAPDVFTFTTAITACGKAGQWERALDLLEEM 468 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18209.1 >prot_Ecto-sp6_S_contig9.18209.1 ID=prot_Ecto-sp6_S_contig9.18209.1|Name=mRNA_Ecto-sp6_S_contig9.18209.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=763bp MRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEAback to top mRNA from alignment at Ecto-sp6_S_contig9:1886823..1889137+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18209.1 ID=mRNA_Ecto-sp6_S_contig9.18209.1|Name=mRNA_Ecto-sp6_S_contig9.18209.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2315bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1886823..1889137+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1886823..1889137+ >mRNA_Ecto-sp6_S_contig9.18209.1 ID=mRNA_Ecto-sp6_S_contig9.18209.1|Name=mRNA_Ecto-sp6_S_contig9.18209.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2289bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1886823..1889137+ (Ectocarpus species6 EcLAC_371)back to top |