mRNA_Ecto-sp6_S_contig9.18204.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18204.1
Unique NamemRNA_Ecto-sp6_S_contig9.18204.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18204.1 vs. uniprot
Match: D8LH06_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH06_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.090e-35
Identity = 78/106 (73.58%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:   19 VTADGEKVVREGKSSGGEGSAATSVEVFTFAAGGVAPKKIRYTGLGNRREKNGRGIFADRESIYYSSAITDMEDDSDSTEFELDPDASETVALCHGTPREGTGAGR 336
            VTADGEKVVREGKSSG EGSAATSVEVFTFAAGGVAPKKIRYTGL NR                        EDDSDS E ELDPDASETVALCHGTPREGTGAGR
Sbjct:  426 VTADGEKVVREGKSSGREGSAATSVEVFTFAAGGVAPKKIRYTGLSNR------------------------EDDSDSAELELDPDASETVALCHGTPREGTGAGR 507
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH06_ECTSI1.090e-3573.58EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1847516..1847942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size342
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350536.607113-CDS-Ecto-sp6_S_contig9:1847515..18477481682350536.607113-CDS-Ecto-sp6_S_contig9:1847515..1847748Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1847516..1847748 +
1682350536.615867-CDS-Ecto-sp6_S_contig9:1847833..18479421682350536.615867-CDS-Ecto-sp6_S_contig9:1847833..1847942Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1847834..1847942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18204.1prot_Ecto-sp6_S_contig9.18204.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1847516..1847942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18204.1

>prot_Ecto-sp6_S_contig9.18204.1 ID=prot_Ecto-sp6_S_contig9.18204.1|Name=mRNA_Ecto-sp6_S_contig9.18204.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=114bp
MEPIDQVTADGEKVVREGKSSGGEGSAATSVEVFTFAAGGVAPKKIRYTG
LGNRREKNGRGIFADRESIYYSSAITDMEDDSDSTEFELDPDASETVALC
HGTPREGTGAGRA*
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mRNA from alignment at Ecto-sp6_S_contig9:1847516..1847942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18204.1 ID=mRNA_Ecto-sp6_S_contig9.18204.1|Name=mRNA_Ecto-sp6_S_contig9.18204.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=427bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1847516..1847942+ (Ectocarpus species6 EcLAC_371)
ATGGAACCGATTGATCAGGTAACCGCCGATGGCGAGAAGGTGGTCAGAGA
GGGCAAATCCTCGGGCGGGGAAGGAAGCGCCGCAACCTCGGTGGAGGTGT
TCACGTTCGCGGCTGGAGGCGTTGCCCCAAAGAAGATCCGATACACCGGT
CTCGGCAACAGGCGAGAAAAGAACGGCAGGGGGATCTTTGCTGATAGGGA
ATCGATATACTACTCCAGCGCTATTACCGACATGTATTCGCGAAACTCAA
CCTTATCTTGCTTCTCCCCTATGCCCCCCCCCCCTTTCTCCCCGATTGTT
ATGGTTTGGAAACCCTAGGGAGGATGACTCAGATTCGACCGAATTTGAGT
TGGACCCCGACGCTTCGGAGACCGTTGCCCTATGTCATGGCACCCCGAGG
GAGGGTACTGGGGCGGGAAGAGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1847516..1847942+

>mRNA_Ecto-sp6_S_contig9.18204.1 ID=mRNA_Ecto-sp6_S_contig9.18204.1|Name=mRNA_Ecto-sp6_S_contig9.18204.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1847516..1847942+ (Ectocarpus species6 EcLAC_371)
ATGGAACCGATTGATCAGGTAACCGCCGATGGCGAGAAGGTGGTCAGAGA
GGGCAAATCCTCGGGCGGGGAAGGAAGCGCCGCAACCTCGGTGGAGGTGT
TCACGTTCGCGGCTGGAGGCGTTGCCCCAAAGAAGATCCGATACACCGGT
CTCGGCAACAGGCGAGAAAAGAACGGCAGGGGGATCTTTGCTGATAGGGA
ATCGATATACTACTCCAGCGCTATTACCGACATGGAGGATGACTCAGATT
CGACCGAATTTGAGTTGGACCCCGACGCTTCGGAGACCGTTGCCCTATGT
CATGGCACCCCGAGGGAGGGTACTGGGGCGGGAAGAGCGTAA
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