mRNA_Ecto-sp6_S_contig9.18198.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18198.1
Unique NamemRNA_Ecto-sp6_S_contig9.18198.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A6H5KLB1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLB1_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 7.830e-173
Identity = 257/294 (87.41%), Postives = 268/294 (91.16%), Query Frame = 1
Query:    1 MEPITGFQGLMAAGGAGVPPGGVAAATGAPHQMIPTVSGDSGEDSVSNDGKRKTEMAKERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            MEPITGFQGLMAAGGAGVPPGGVA AT APHQ+IPTVSGDSGEDSVSND KRKTEMAKERNRLHARNTRARKKQYMEELKDKVESLH KRA+A H+KE   R +EE+IARWAATLK VLDLRC+GVVD A WNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQ+GGLSPP             QPPRPRVHLKSCVS+GD+VFSSD+GIMCVFSMTTVDACDFGSPLEVEKNGMLRA FVEGGKLDELE+MFDGIAVHQQLQKAMG
Sbjct:    1 MEPITGFQGLMAAGGAGVPPGGVAGATVAPHQIIPTVSGDSGEDSVSNDCKRKTEMAKERNRLHARNTRARKKQYMEELKDKVESLHAKRAAAEHNKEXXXREDEEKIARWAATLKNVLDLRCQGVVDPAVWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQKGGLSPPXXXXXXXXXXXXXQPPRPRVHLKSCVSNGDMVFSSDRGIMCVFSMTTVDACDFGSPLEVEKNGMLRATFVEGGKLDELEIMFDGIAVHQQLQKAMG 294          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A836C6X3_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6X3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.150e-47
Identity = 98/237 (41.35%), Postives = 144/237 (60.76%), Query Frame = 1
Query:  172 KERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            +ERNR+HARNTRARKK Y +EL  K+ +L  ++     ++   ++    Q + WAATL++ +DLR  G +DEA W+++L EDF++++P+TPYR F P+DV   RR VL+GV+GM++DTASL  M +N+  + R+  G                    R RV       + +  F    G+MC F M T+DA   G+  E EK+G+LRA F + G ++ELEM FDGIA++ QL +A G
Sbjct:   58 RERNRMHARNTRARKKAYADELTAKLAALTKEKEEHEKAEAEASKARTVQQSAWAATLRQAMDLRAAGCLDEAQWSKILAEDFKMTMPVTPYRSFSPSDVVNNRR-VLLGVDGMVADTASLQVMLDNIGTKTRKNEG--------------------RVRVEYLLGSDAAENCFFGAAGLMCTFMMRTLDAKAHGAACECEKSGILRARFDDAGCIEELEMAFDGIAMYHQLMRAKG 273          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A6H5K0R4_9PHAE (PAS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0R4_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.020e-34
Identity = 97/241 (40.25%), Postives = 141/241 (58.51%), Query Frame = 1
Query:  166 MAKERNRLHARNTRARKKQYMEELKDKVESLHTKRA-SAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAF-VEGGKLDELEMMFDGIAVHQQLQKAMG 882
            M +ERNR  AR +R  KKQ  ++++ ++  L  + A +AA  KEA  + ++ + AR  A L+KV DLR +G  DEA+W EVL+ D  +++P+TPYR F+PADV   RR VL+GV+GMISDT SL+ + +N+  + R     SP ++                +  L S    G   FS D G+MC F+M T+DA    +  E E NGM+R  F  +  K++EL+M FD I+ +QQL  A G
Sbjct:   93 MDRERNRRQARKSRELKKQCADKMQQQLIQLEKESAEAAAREKEAAKKLKDCRTARCQA-LRKVFDLRADGCTDEASWLEVLSPDLRMTMPITPYRSFNPADVVNNRR-VLLGVDGMISDTQSLSVLLDNIGVKTRLY--ESPVSI----------------KFTLASDADEGGAFFSRD-GLMCSFTMRTLDAVKHAARREWEVNGMVRVRFNSDTNKIEELDMTFDAISCYQQLMLASG 312          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.160e-25
Identity = 90/243 (37.04%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  157 KTEMAKERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEAT-ARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            K E +++RNR HARNTR RKK Y+EEL+  V+ L  +R +AA +K A  AR  + Q  R++  L+  L  R  G    A W   L E F   LP+TPYR F  A+V  G+R ++VG++ MI+D ASL  M E++  RCR                      P   RV ++      D + S D  + C + + T +A   G+  E    GMLRA +    KL  LE+ FD +   QQLQ+A G
Sbjct:  113 KAEASRDRNRKHARNTRLRKKAYIEELERTVQQLTAERDAAAAAKAAEGARAAQLQSVRFS-VLQMALFYRAAGNTCRADWATALEESFTCVLPITPYRSFPSAEVVSGQR-MIVGIDAMIADVASLALMVESVG-RCR----------------------PSERRVQVQYYAGPEDAITSGDM-LSCRWMLRTENAAACGALCECHAQGMLRARYSPSHKLAHLELAFDVMGFMQQLQRASG 329          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A7S3YIB3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB3_HETAK)

HSP 1 Score: 115 bits (287), Expect = 3.050e-25
Identity = 85/244 (34.84%), Postives = 131/244 (53.69%), Query Frame = 1
Query:  172 KERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAA-------TLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            ++RNR HARNTR RKK +++ELK +V+ L     +AA  +E   R  E Q  R AA        L   LD R  GV D + W+ +L E F + +PLTPYR F  + V+ G R+V  G+E +++D ASL  M +NL +   +   ++                P  PRV +K  ++  +L+   D  IM  ++M T +A   G+  E++  GMLR AF +  K+  +E++FD  ++ +QL+K  G
Sbjct:  121 RDRNREHARNTRLRKKAFVDELKKQVQDL-----AAAREREERERHLESQ--RSAAMNEIRFQVLATFLDYRGRGVKDLSLWSSILDEQFMMRMPLTPYRSFPQSQVQDGARKVK-GIEDVLADVASLQVMLDNLGKNTEKWKQVT--------------KSPNTPRVEMKYKINQKELLVQGDM-IMANWNMQTSNAMARGALAELKLYGMLRCAFTKFNKISYIELIFDVYSMLEQLKKCNG 341          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A7S2DLD9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLD9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.470e-24
Identity = 86/244 (35.25%), Postives = 123/244 (50.41%), Query Frame = 1
Query:  157 KTEMAKERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG*K 888
            K E  +ERNR HAR TR RKK+YME LK ++E L  + A+     +    G++ +   W   L+  L LR     D++ W   + ++  L  P+TPYR +  ADV   R  VL+G++ +I D ASL      LA  C +  G+            G  NQ    +V L+  +    + +  ++GIMC F M + +    G   EV K G LRA F   GK+ +LE+ FD IA  +QLQ A G K
Sbjct:  122 KEECRRERNRRHARETRLRKKEYMETLKSQLEQLSAQNAALEKQIKDKRLGQDAKHDLWITKLQGALALRASAEPDQSRWRNFVDDEIVLVHPITPYRSYRSADVISNRC-VLMGIQDIIDDAASLLIA---LAGLCNE--GIH----------DGTRNQ----KVQLRFNIDEQGMHYR-EEGIMCPFDMRSSNLTPLGLKSEVNKRGCLRAIFNSEGKVKQLELHFDPIAFWRQLQHASGAK 344          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A7S2B104_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B104_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.970e-22
Identity = 75/237 (31.65%), Postives = 123/237 (51.90%), Query Frame = 1
Query:  172 KERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            ++RNR HARNTR RKK Y+E+LK  V+ L  +  +     +     E E + +    ++++++ R  GVV+   W  VL +DF ++LP+TP+R F+P +V G RR V+ GV GMI DTAS   +  ++  R + RG                        V +   +  G+ V  +D   M  ++M+T +A   G+  E    GML+A F +   +  ++++FD ++  QQL +A G
Sbjct:  251 RDRNREHARNTRLRKKAYIEKLKQTVQVLSKECETITRDNQQDEVNETEILEQRHQVIQRMMNYRTSGVVNPEKWQAVLAQDFTMTLPITPHRFFNPNEVVGCRR-VVRGVSGMIQDTASFKVLISSIGRR-KYRG---------------------HGEVEVNFNMPDGETVIKNDL-FMTRWTMSTTNAMSKGALAECSLEGMLKATFADENTISSVDLIFDVMSFMQQLPEACG 463          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A7S1D1F4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1F4_CYCTE)

HSP 1 Score: 104 bits (260), Expect = 5.720e-21
Identity = 81/244 (33.20%), Postives = 124/244 (50.82%), Query Frame = 1
Query:  157 KTEMAKERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTED-FELSLPLTPYRKFDPADVEGGR-RRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            K +  ++RNR HARNTR RKK Y+E+LK  V+ L  +R +    +   A    E        L     LR         W+ +L E  F   +P+TPYR F  ++V+  + +R ++G++GMISDTASL  +  +L +R R          PAA+             +  +  + + D V + +Q +M  + M+TV+A  FG+ +EV K GML   F    K+  LE+MFD +A   QL++A G
Sbjct:   14 KVKANRDRNREHARNTRLRKKAYLEKLKSTVDELCRERDTLVSERAGAASLMVEIHNTRTEVLMSFFALRSTYEKQRDLWSSILDESCFSCVMPVTPYRSFPASEVQVSKCQRTILGIDGMISDTASLHVLLNSLIDRSR---------YPAAS-------------IQFRYTLVTEDAVVAGNQ-MMARWVMSTVNATQFGARMEVAKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQAAG 234          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: F0Y499_AURAN (BZIP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y499_AURAN)

HSP 1 Score: 104 bits (260), Expect = 1.710e-20
Identity = 84/256 (32.81%), Postives = 126/256 (49.22%), Query Frame = 1
Query:  157 KTEMAKERNRLHARNTRARKKQYMEELKDKVESLHTKR---------ASAAHSKEATARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQ----RGGLSPPAVPAAASGSGGDNQPPRP-----RVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQ 870
            K EM K+RNR HAR+TR RKKQY+E+LK +V  L  K+            AH   ++ R  +EQ+    A L+  L  R  G VD   W +++ +   ++LP TPYR  +  +      R L GVE +I D  S+  + + +  R  Q    R    PP       G G   + P P     RV +++  +  D+V   D+ +MC +  TT    D G   EV  +G+ RA F +  KL ++E+ FD ++  +QLQ
Sbjct:  986 KAEMTKQRNREHARSTRRRKKQYVEQLKKQVAELLAKQQQLNAREGFGEGAHGAPSSPR-HQEQVRVKTAVLQAFLLCRVNGTVDRDRWRDIVDDHIRVTLPQTPYRATNVGEKGPHGARRLKGVESLIRDCVSVARLVDMIRRRAGQLLAHRSRGEPPR-----DGDGAAARAPSPASLAARVEIQTHAAPEDVVIVGDR-LMCHWKATTRGLADMGFDAEVSLDGLGRATFHKN-KLRDVELSFDALSFTRQLQ 1233          
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Match: A0A7S2DGM6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGM6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.340e-20
Identity = 83/259 (32.05%), Postives = 127/259 (49.03%), Query Frame = 1
Query:  148 GKRKTEMAK----ERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEATARGEEEQIARWAATL----------KKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYRKFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAVPAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACDFGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG 882
            GKRK   +K    ERNR HARN+R RKK ++E+L+     L  K              E +Q+ R AATL          +++L  R +G +    W+ +L EDF  +LP+TPYR F+P ++    R VL GVEG+I DTASL ++  ++  R   RG   P A+                 + L S     ++++       C + M + DA   G+  E+E +GML+A F    K+  +E +FD ++    L +A+G
Sbjct:   70 GKRKPPPSKVDVKERNRTHARNSRLRKKAHVEKLQRTALILSCKNEQM----------ERQQMERMAATLDIQATQRAMVQRLLYYRVQGCIVPGYWHRILAEDFTFTLPVTPYRYFNPGEISRSGR-VLYGVEGIIRDTASLAQLFLSVGPR-HHRGSFKP-AISM--------------EIDLDSVAQERNILW-------CRWIMRSTDAVANGALAELESDGMLQACFSTDHKIQSVEFLFDVLSFTFSLSRALG 294          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLB1_9PHAE7.830e-17387.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C6X3_9STRA5.150e-4741.35BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5K0R4_9PHAE7.020e-3440.25PAS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CN81_9STRA1.160e-2537.04BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3YIB3_HETAK3.050e-2534.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2DLD9_9STRA9.470e-2435.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2B104_9STRA3.970e-2231.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1D1F4_CYCTE5.720e-2133.20Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
F0Y499_AURAN1.710e-2032.81BZIP domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2DGM6_9STRA3.340e-2032.05Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1789611..1793842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score143.7
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D8LMT6
Model size1188
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.PAS domain
EggNOG OGs2CY5M@1,2S26N@2759
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-14_001290.1
Cds size885
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18198.1prot_Ecto-sp6_S_contig9.18198.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1789914..1793842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.9129431-UTR-Ecto-sp6_S_contig9:1789610..17899131682350535.9129431-UTR-Ecto-sp6_S_contig9:1789610..1789913Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1789611..1789913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.9274266-CDS-Ecto-sp6_S_contig9:1789913..17899161682350535.9274266-CDS-Ecto-sp6_S_contig9:1789913..1789916Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1789914..1789916 -
1682350535.9374566-CDS-Ecto-sp6_S_contig9:1790211..17903471682350535.9374566-CDS-Ecto-sp6_S_contig9:1790211..1790347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1790212..1790347 -
1682350535.94733-CDS-Ecto-sp6_S_contig9:1790663..17908721682350535.94733-CDS-Ecto-sp6_S_contig9:1790663..1790872Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1790664..1790872 -
1682350535.957512-CDS-Ecto-sp6_S_contig9:1791170..17913051682350535.957512-CDS-Ecto-sp6_S_contig9:1791170..1791305Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1791171..1791305 -
1682350535.9673123-CDS-Ecto-sp6_S_contig9:1792143..17922751682350535.9673123-CDS-Ecto-sp6_S_contig9:1792143..1792275Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1792144..1792275 -
1682350535.9771547-CDS-Ecto-sp6_S_contig9:1793222..17932951682350535.9771547-CDS-Ecto-sp6_S_contig9:1793222..1793295Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1793223..1793295 -
1682350535.9868484-CDS-Ecto-sp6_S_contig9:1793645..17938421682350535.9868484-CDS-Ecto-sp6_S_contig9:1793645..1793842Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1793646..1793842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18198.1

>prot_Ecto-sp6_S_contig9.18198.1 ID=prot_Ecto-sp6_S_contig9.18198.1|Name=mRNA_Ecto-sp6_S_contig9.18198.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=295bp
MEPITGFQGLMAAGGAGVPPGGVAAATGAPHQMIPTVSGDSGEDSVSNDG
KRKTEMAKERNRLHARNTRARKKQYMEELKDKVESLHTKRASAAHSKEAT
ARGEEEQIARWAATLKKVLDLRCEGVVDEAAWNEVLTEDFELSLPLTPYR
KFDPADVEGGRRRVLVGVEGMISDTASLTEMCENLAERCRQRGGLSPPAV
PAAASGSGGDNQPPRPRVHLKSCVSSGDLVFSSDQGIMCVFSMTTVDACD
FGSPLEVEKNGMLRAAFVEGGKLDELEMMFDGIAVHQQLQKAMG*
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mRNA from alignment at Ecto-sp6_S_contig9:1789611..1793842-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18198.1 ID=mRNA_Ecto-sp6_S_contig9.18198.1|Name=mRNA_Ecto-sp6_S_contig9.18198.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4232bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1789611..1793842- (Ectocarpus species6 EcLAC_371)
ATGGAACCTATCACCGGCTTTCAGGGGCTAATGGCTGCAGGGGGGGCGGG GGTCCCGCCGGGGGGAGTCGCGGCCGCGACCGGAGCGCCGCACCAGATGA TACCCACCGTATCCGGGGACAGCGGCGAGGACTCGGTTAGCAACGACGGC AAGCGCAAGACCGAGATGGCGAAGGAGCGCAATCGCCTTCACGCCAGGTG GGGGGGTTGCTTGTATGGGTGTGTCTTTGTGTTTGATTTTGTGTCGAAAC TCAGTACTGCACCGGCTGGCCAATGAAGAGACGCCAGTCTTTTGGAGCTT TCGTTTTGGTGGCCATGACGACCATGGCAACCCTCCCCCGTCTTCCTTCT CTGCCGACAATATCGCTTTTGGTGTGTCACCTCGACAACCTCTCTATCTC TTATCTCTCTCTATATATATATGTATGCCTCTGGCTCGCTCGCTCTCACG CACACACTCTTTATCTCCATCTCTATCTCTTACTGCTGTGACTTTTGTCT CTTTCGGCGGTGATCATGACGGATATCACTTCCGATGTCCATGCCAGGAA CACGCGCGCCCGCAAGAAGCAGTACATGGAGGAACTCAAGGATAAAGTGG AGAGTTTGCACACGAAACGGGTGAGCCGAGCCCAGGAAACGAGCGACAGA GGAGAGGGATAGGCAGCGGATAGCGCGAAGACGTGGAAGAGAGAGATATC AGGGAGGGAGGAAGGGAGGGAGACGTAAAGAGGCGAGTGAGAGCCGAAGG GAGTTAAGGATAACAGGAGGATTAGAGAGACAGAGAGAAAGAGGAAAGGA TAGGGATAAAAAGAGATGACGATAGACACAGGCCGTCATAGACACTCTAG AGAAAAACACGAGAGAGAGAAAACTCTTGGAAGAGAGCGATGGAAATACA GACGAAGACACTCAAGAGACAGGCAGCGAGAGAGGACGGCGTGTCGAGTT GGAAAAGCAGCAACATAGGAGCCCTAAGCTCGCACGCTGCGATGTTCCCT TGACGTCATCTTTACGACCACTGGTCTGGTCTGAGTTGATAAACGCGCGT TTCTCCTCCGTCGCGGTTCATGTGCTTGAAACCCGAAGCCCCCGTGAGAC GCTGCCGTGTATACCTCAGGAACATTGTAAAGAACATTCCACAGGAACTA ACTCAAGTTGGTTCGGTTCAGCCGACCGTGGTGTTCTTGTTTGACAAAGC AGTTTTTGATTTTCGTGAACAAGGTTGTCTCGCAAGCGCTACATTGGAAG AAGTCGTTTTGCGTCCTGTGTCAGCACACAAATGCCAGCGGGCCGGTTTT GGACAAACCTATCGGGGCACGCACAGACAGTATTTCTCGTCCGTGCCCAA GCGCCCGACGCGCGCGCCCCGCCCCCAAAACACCTATTTATTAACTCAAG ACTAGCCCTGTGGGCCCGCACTCAACCGCCCGTGTGTGTGTCCTCAACAA CACTGACGACTGTGACCGAGCTAGTTGTTCGTAGGCAGTGATCGTTTCCA CTTTTTTTTTACGAGGTTGCGACAAATGTTGCCGCCGCCGCCGCCGCCGC CGCCACAACTCTCCTAGGCGTCTGCGGCACACAGCAAGGAGGCAACGGCC AGGGGGGAGGAAGAGCAGATAGCGCGCTGGGCCGCTACGCTTAAGAAGGT GTTGGACCTTCGCTGCGAAGGCGTCGTCGACGAGGCGGCATGGAATGAGG TGAGGGCCGTATGCGTGCGTGCGTATGCACGCCTGCAGCAGAGAAGGGAA GGGAAAATTCATCGAGAGCGAGTTTTTTTTTTGGGGGGGGGGGCTTGTGT TCGTGGTAAGCGCTGTGGCGAACGCAACATCAACGTCCTTCGAGGAGAGA TAATGCTTCGAGCGCATTTGCTACGCTGTGCGCATGACGACGCACAGCGC CCTTGTTCGACACTGGGTCGCTCTGCGCAGATAGTGGCATCCTCGAACCG ACCGCTGTTTAGGGACTCGATCGCAGCAGTAAGTGGTGGGGGCTTGGTAG ATGGGGTCACACAAGACAAGACAACGTTCGAGATTTAGACTACTAGGAGT TGTAGTGGGTGTTGACGCTGCCCGATATTACTTACTCGTGTGGGTGGTTC TGTGTTTGGAACCAACGCGCCCTTGCGAGCCGGATATTTTCTTATCCGTT TGTTTGTTTCCTCCCCTTGACATAGTCTATGTGTATGTTGCGCCATGCCA AAGTTATCAACAACTACAAGAGTGAACAAAAACGGCACCAAACGAGGGTG CTTGGTAGCTGAAAAATGGCAACGCGCACCTGGATAACTTGCTCGCGCCG TACGATTGCGCGTTGCACGCGGAAAAAGCTACATGAGTTGAAGCGTTGGT TGACCGGGATTCGTGACACGGGTGAAGGAGGCTGTTCCCTGCTCTCTTTA CGGTCATCGCAAGAACAACTACATGCATCGTCCCTCCCTCCTCTCCCTCT CTCCGCCCCCAACACGCCAGCTCCATTCTCCGATGGACCCGACACAATCC CCCCCCCGCCGTACCCACCGCTCTTTGTGTACGACAGGTGCTGACGGAGG ACTTCGAGCTGTCTCTCCCTCTCACGCCGTACCGGAAGTTTGACCCCGCG GACGTGGAGGGGGGGCGCCGCCGAGTGCTTGTAGGGGTGGAGGGCATGAT CTCCGACACGGCCTCCTTGACGGTGAGATACGTCTTTGACGTGACGTACT TCCTCTCTCTCCGGTCCTACTGTAGTTTCCACACACCCCTCCTCCTAGTG CTATATTTACTACCGCACCTAGATTTTACTACCCTACTCCTGCTCCTAGT CCTCATTTGTAAAACGATGCACGCACACCCAGAAAGTTGATCGAGAACCC CAGTTTGCGGTGCCTCTGAGAGACCTCTGAGAGACGTTTAGCCCGAAACT CACTTGCGTGGCCGTCCTGCCTGTAACAGGCAAGAAACGATCCCCCCCCC CCGGTCCCTGTTCCCCCCAGGAAATGTGCGAAAACCTGGCGGAGCGGTGC CGCCAACGGGGAGGTCTCAGTCCACCGGCGGTGCCGGCGGCGGCGAGTGG CAGCGGCGGTGACAACCAGCCCCCGCGTCCTAGGGTGCACCTCAAGTCTT GCGTGAGCAGCGGAGACCTGGTCTTCTCGTCGGACCAAGGAATCATGTGT GTCTTCAGCATGACGACGGTGGACGCGTGGTGAGACAGTTGAGCCGAAAG ATGGTAAACGTACCTTCTTTTGATGTGGCGACGATCATTCGCCGATGTAT GTTGAGAGGGCGGGGTATTCGAGTATTGTCAACCAAACGATGAATCGGTC GTGGGAGAATTGTTTCCGTTTGCTTCATAGCAATTGAAAAAGTGTGCTCA ACAAGATTACTTGTCGGAGGTACATGGCTCTCCGGTTTGGTTCTGAATCG GCGCCGGGGCTGAACACATCTTGCTCAGCCCTACTTCATTGTCGCCATCA CATGTAGTTGAATGTAGCGTGCCCCCCTTCCCCCCCCCCGTTCAGCGATT TCGGGTCGCCCCTAGAGGTGGAGAAGAACGGGATGCTTCGGGCGGCCTTC GTGGAGGGGGGTAAGCTTGACGAGCTGGAGATGATGTTCGACGGTATCGC CGTACACCAGCAGCTGCAGAAGGCGATGGGGGTAAGCTGTGTAGCCTATC CAAGCAAAAGGGTTGTGGGTATGTACATACGCGGGTAGCAGTTATCCGCG CTTTAAGGACGCTAAGCCAGGGACATCCTCGCCAGCACCGTGAAAACTAA AAGATAACGCACAGTAGTTCCTGAGATGCGGTGCTTCCTGGAGGTATTTT GTTGCAAGCAGAAATTCCGACGGCACGAACGGAAGAGACGACTTTTTTTT CCTCTCTGAGCGTCATGAATCAATCGACCCTGCTCTTCCCTCCCCGGCCC GAATATTCCTTCACGCGCGAGTGCAGTGAAAATCAAGCCACGCACGGCGA TGGCGAGGCCGCCGCGCCCCCCGCCATCGCATCGTCGTCCAAGGAGCGCG GTTGCGACCTGGACAACGAAGTTTATGCCAAGAACAGCATCAACCATATA CGGGAAAGCCGGGTGGGGAGATACAACAGCGTCGTCGTTGTCGGAGGAGG AAGGAAGACAGGACAGTGTTGTGCCGTCGTCCACGCTGCGGTTTCGGGTG CAGCAGCAGCCGCAGCCGTTAGCCCCCTCGGGGTTGGGTGCGATGGACGA AGGCATACAGGGTGGGGGGCGCGCGTCTGGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1789611..1793842-

>mRNA_Ecto-sp6_S_contig9.18198.1 ID=mRNA_Ecto-sp6_S_contig9.18198.1|Name=mRNA_Ecto-sp6_S_contig9.18198.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1789611..1793842- (Ectocarpus species6 EcLAC_371)
ATGGAACCTATCACCGGCTTTCAGGGGCTAATGGCTGCAGGGGGGGCGGG
GGTCCCGCCGGGGGGAGTCGCGGCCGCGACCGGAGCGCCGCACCAGATGA
TACCCACCGTATCCGGGGACAGCGGCGAGGACTCGGTTAGCAACGACGGC
AAGCGCAAGACCGAGATGGCGAAGGAGCGCAATCGCCTTCACGCCAGGAA
CACGCGCGCCCGCAAGAAGCAGTACATGGAGGAACTCAAGGATAAAGTGG
AGAGTTTGCACACGAAACGGGCGTCTGCGGCACACAGCAAGGAGGCAACG
GCCAGGGGGGAGGAAGAGCAGATAGCGCGCTGGGCCGCTACGCTTAAGAA
GGTGTTGGACCTTCGCTGCGAAGGCGTCGTCGACGAGGCGGCATGGAATG
AGGTGCTGACGGAGGACTTCGAGCTGTCTCTCCCTCTCACGCCGTACCGG
AAGTTTGACCCCGCGGACGTGGAGGGGGGGCGCCGCCGAGTGCTTGTAGG
GGTGGAGGGCATGATCTCCGACACGGCCTCCTTGACGGAAATGTGCGAAA
ACCTGGCGGAGCGGTGCCGCCAACGGGGAGGTCTCAGTCCACCGGCGGTG
CCGGCGGCGGCGAGTGGCAGCGGCGGTGACAACCAGCCCCCGCGTCCTAG
GGTGCACCTCAAGTCTTGCGTGAGCAGCGGAGACCTGGTCTTCTCGTCGG
ACCAAGGAATCATGTGTGTCTTCAGCATGACGACGGTGGACGCGTGCGAT
TTCGGGTCGCCCCTAGAGGTGGAGAAGAACGGGATGCTTCGGGCGGCCTT
CGTGGAGGGGGGTAAGCTTGACGAGCTGGAGATGATGTTCGACGGTATCG
CCGTACACCAGCAGCTGCAGAAGGCGATGGGGTGA
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