mRNA_Ecto-sp6_S_contig9.18188.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18188.1
Unique NamemRNA_Ecto-sp6_S_contig9.18188.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18188.1 vs. uniprot
Match: D8LGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY9_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.670e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   46 MSRFAKFATGLREFGNDINVNISKALNISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVNGGAAPAAPG 267
            MSRFAKFATGLREFGNDINVNISKALNISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVNGGAAPAAPG
Sbjct:    1 MSRFAKFATGLREFGNDINVNISKALNISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVNGGAAPAAPG 74
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BLAST of mRNA_Ecto-sp6_S_contig9.18188.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.030e-30
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:   46 MSRFAKFATGLREFGNDINVNISKALNISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVNG 243
            MSRFAKFATGLREFGNDIN NISKAL+ISK SEDP+S+LLEEARAGRVDGLKACLD+FASRTDVNG
Sbjct:    1 MSRFAKFATGLREFGNDINANISKALSISKESEDPSSVLLEEARAGRVDGLKACLDNFASRTDVNG 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGY9_ECTSI4.670e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYH1_9PHAE5.030e-3090.91Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1717221..1720793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001400.1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.0946238-CDS-Ecto-sp6_S_contig9:1717220..17173551682350535.0946238-CDS-Ecto-sp6_S_contig9:1717220..1717355Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1717221..1717355 +
1682350535.1056595-CDS-Ecto-sp6_S_contig9:1720596..17207021682350535.1056595-CDS-Ecto-sp6_S_contig9:1720596..1720702Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1720597..1720702 +
1682350535.1154776-CDS-Ecto-sp6_S_contig9:1720764..17207931682350535.1154776-CDS-Ecto-sp6_S_contig9:1720764..1720793Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1720765..1720793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18188.1prot_Ecto-sp6_S_contig9.18188.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1717221..1720793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18188.1

>prot_Ecto-sp6_S_contig9.18188.1 ID=prot_Ecto-sp6_S_contig9.18188.1|Name=mRNA_Ecto-sp6_S_contig9.18188.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=90bp
PDAAERGGRVSATGAMSRFAKFATGLREFGNDINVNISKALNISKVSEDP
NSILLEEARAGRVDGLKACLDDFASRTDVNGGAAPAAPG*
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mRNA from alignment at Ecto-sp6_S_contig9:1717221..1720793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18188.1 ID=mRNA_Ecto-sp6_S_contig9.18188.1|Name=mRNA_Ecto-sp6_S_contig9.18188.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3573bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1717221..1720793+ (Ectocarpus species6 EcLAC_371)
CCAGACGCAGCAGAGAGGGGGGGGAGAGTCTCCGCAACAGGCGCCATGTC
GCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGACATCA
ATGTCAACATCTCCAAGGCACTCAACATCTCAAAGGTGAGAGACGCGAAA
ATGTCGGGGTGATTACGTTGAATTTGGAACAAACGATTTATAAGCACGTA
CCAGTAGATGTTGCATACTGCACATTGCAGAGCAGCCGTATAGTAGTTGG
TTGATGTCTCCAGCGCCGGCATGACATGCTTTGTATTTCTCCTCTTCGAA
TCGTGGGAGGCGGTGGCGGTCCCTCTTGTTCCCTCTTTCAATCAATCGAG
CGAAGGCAAACAATGCTGCTGTTGTGCAGCGCATGCGCGGAGCATTTCGC
GGCACCTCTTTCAATCTTCAATCTTGCCTCGGAACTGATCCTGTACAGCA
GTACCCAGAGAACGCTCCATCAGCTCATCCTACTGCGTCCGGCCAGGCCA
TGCAGCAGAGCTGGACCGGTGCCGTACTAGAGGTTCGCGTGCTTGTTGGT
GTGTCTGCGAGGGTTAGGTTGCGCACGTTTGTACGACCTGCCTGTGTTTT
CAGGGAGCGTGTGTCGATTTGGATTTAAGCCGCACTCGGTCGCTGAACAT
GTGACTCCCCCTTCCGAGAGAATTTCCTTTTTGCGTCCTCAAACCGTTTG
CTACACGATACGGCCTTGCGGACGCCCCTGCATGCAGTAGAGAAGACCGA
ATCGACGGGGAAGAGGGGTGTTAGCTTAACGGGTGGACGCGCCATGTCCC
AGGGAAAAATCGCCGGCGTCTCGTGAGCCCACGGAAATTTCCGCATCCGT
TGGTCTCAAGATGCCAACAACCACACACCGCAGAAGGGGCGCTCAATTGC
TCCACATCCGGGAGCGCGCGAAAATCGATCGAAACATGCGAAGAAAGCTC
TCGACGAGACCTTTTCAACACCACAGATTTCGGCATTACGTAGCGCGGCC
TCTTGGTAGTGTGGAAGCAGTCGAGCTAGATGAGAGTATGCCTGCTGCTG
TAGGGTGAGGGTGAGTGGGATGCTGTAACCCGCACGTTGAACGGAGTATC
CTCTGGGAGCAAGTTGTGGACTGGAGTGCTGCTGTAAACGGCCTTCTACA
CGAGCATGCGTGGAAGAATCATTTCCTCTCCCGAAAAGCCCTGACGGGGG
AGCCCAACCCTTCCACTGCACTAGAGTCTAGAATCCTCCACATGTACCAT
ATTCAAGAAATATTCACGTTGTATGATAGTGCAATAGCGTCAACGATCGT
TGTATCTATCATGGTTTTTCGTATTTCGGGCGGGGTGATTAGACTTTAAA
ACCCAAGCACCCGAGCAGGCGCTCGGCAAAGATATCAATCAATACTCTGT
GGAGGAGATGGCCGGTTTGTTGTGTCGCAAGTAACCAAATGACTTGCATA
CCGCATACCGCATTGGAAATGAATCCTCCGTTCAGCAGAATTTTTCCCGG
GCTCTCACAGCGCTGCGTTCTCCGGCCTCTTTTGGAGCGCTGACAGAACA
ACCGTCTGTTCTCGTTTCACTTGAATTTAGAATTGAATTTAGACTATCCC
CCATGCCTCTCATGCCGCTTTGTTCCACGTCTCTTCAGCCCGCGTCTCTC
TCGCCGGCTCAGCGGAATCCGGACAGAGAGGCCGGCGGCCGCTGGCTGTA
GCTCAGACGATCTGGCCGGTTTTTGGGTCTGCCCCTTTTCTCTCGACGGG
TATTTCGGGGTTAGACGTTAAAACCCAAGCACCTGAGCAGGCGCTCGGCA
AAGATATCAATCAATACTCTGTGGAGGAGATGGCCGGTTTGTTGTGTCGC
AAGTAACCAAATGACTTGCATACCGCATACCGCATTGGAAATGAACCCTC
CGTTCAGCAGAATTTTTCTCGGGCTCTCACAGCGCTGCATTCTCCGGCCT
CTTTTAGAGCGCTGACAGAACAGCCGTCTGTTCTCGTTTCACTTGAATTT
AGACTATCCCCCATGCCTCTCATGCCGCTTTGTTCCACGTCTCTTCAGCC
CGCGTCTCTCTCGTCCGCTCAGCGGAAACCGGACAGAGAGGCCGGCGGCC
GCTGGCTGTAGCTCAAACGATCTGGCCGGTTTTTGGGTCTGCCCCTTTTC
TCTCGACGGGTATTTCGGGGATCGCTCTGCACTACGTCAGTTTGTACCAC
ATCCTTTGTGAAACATTTTTGCGGGGCTCTTTACTCACGCCCGCACTCCT
ATAATCGGGCCTTCCACTATAGACTAATTCGGTTGTTCACGACGAGCAGT
CACGGGGTGCGTGGTTTCCCCGCTTACGGTGATGAGGCCCGTTTCTCCTC
CAGTAAGACGTTCATGGACCTGTTGTTCAACTGCTGAACCACCTTTTCTC
TCCACCCCTCTCAGTCAGATGCCGTTTGCCGGTGTACCTCTCTGCGTTGA
GCACACAGCTTTTTGCGGGCTATTGCTTGTCAGGGGCGTGTGTGAATCGA
AAGTCTCTCTCCCCACTGCTTTGAATCTCTCTCACCACTGCTGTGCTCTC
CGTTCCATCAGTCTTAGACCTACAGTAGACCATTCCTACACGTCATGTCC
TGGAGCCGGGCCCCTGTGTCAGACTCGGGCCCCTTATTACCCTCATGCGC
GTACACATGCATACAGACAGCCAGGGTTCCCAAACCAATATTTGTGTCCT
GATTTTTGCAACCCGTGTGTTCTCCAATGCTGTGGTGTACCACATGCACA
TGCATACAACACTTGTTCACCTGTGCAGCAGTCGTAGTCTTGGTATTTAT
TTACTACTTCGAAGTATTCTTTTTTCGTGGCGATGTGTTGGCGCATGTGC
ACGCCTCGATGCACGAGTACTCTTTCGCTTCGTCTTGTTTATAATGGCAC
AGCCCGTTTCTTTTTAAGTTGCCCCGTTGTCCCAAGGCGTGGTGGGATGA
CACGAGGCGAGGGCGTGCTGCATGCGCTCCCTCTCCGCACCGAAACATAT
ATTTGCACGAAATACCAGTCGTTCCACCAACGTTGAGTGTGCTGCTGAGA
CTCGGTGCATCATACCGACCGCCGAGTACCCCAAACATCAGACTTACGGC
GTTGTTGTTCTTGTTGTCTTGGCGTACAAAGTACCGTTTTGGCCTCTGTT
TCGTGCCACCTGTAGGCACATGCACACATGTATTCGCGAAAAGGATGATT
GCCAGTGTGAGAGAGGCCCGACGGTGCACCAATGTTTTTTGTTGGGATAG
GTGGAGAGGAACGCCTCCGAAACGGCTGAGCTGCTGCCTACGACACACTC
TCATTGGCGTTCTCGACCGACAGCAGTTGCGCCGTATCGCCGCCCCCGCG
TACCCCTCGTGATGCGCTCGACGCAGGTGTCCGAGGACCCCAACAGCATC
CTGCTGGAAGAAGCGAGGGCTGGCAGAGTGGACGGCCTCAAGGCATGCTT
GGACGACTTCGCGTCCAGGACGGACGTCAACGGTGCCCTCGACCGCTCCT
TCCTGTCCCCCCTGTGCCTCGCGTGCCGCGGGGGACACGAAGAGGCGGCG
CTGCTCCTGCTGCACCGGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1717221..1720793+

>mRNA_Ecto-sp6_S_contig9.18188.1 ID=mRNA_Ecto-sp6_S_contig9.18188.1|Name=mRNA_Ecto-sp6_S_contig9.18188.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1717221..1720793+ (Ectocarpus species6 EcLAC_371)
CCAGACGCAGCAGAGAGGGGGGGGAGAGTCTCCGCAACAGGCGCCATGTC
GCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGACATCA
ATGTCAACATCTCCAAGGCACTCAACATCTCAAAGGTGTCCGAGGACCCC
AACAGCATCCTGCTGGAAGAAGCGAGGGCTGGCAGAGTGGACGGCCTCAA
GGCATGCTTGGACGACTTCGCGTCCAGGACGGACGTCAACGGCGGCGCTG
CTCCTGCTGCACCGGGCTGA
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