mRNA_Ecto-sp6_S_contig9.18172.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: D8LGX3_ECTSI (Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI) HSP 1 Score: 1101 bits (2847), Expect = 0.000e+0 Identity = 617/643 (95.96%), Postives = 626/643 (97.36%), Query Frame = 1
Query: 199 MDAGEDFDQLDGIPGMPETIGIGPILRSNATKSIDIRFGGVIFSRNGQIPGDVHSVLPTRGGFDLPPLPAALPEYSLEGEAAXXXXXXXXXXXXPRDHASSVAEEIAQKIAEGSGPDVGGRATAGEQQLTPSGFRAAALQSVTGHVGIRERRAAETGTXXXXXKAPAGVDPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPSQVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQATSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DENAPGESVEGEWHLEFVSNDGGEEGVQEGWDLASSTDPEKKERLAMLKEAGSEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDEANRFVVGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRLSSSSSSPTVTNGGAANKSLFQ 2118
MDAGEDFDQLDGIPGMPETIGIGPILRSNATKSIDIRFGGV FSRNGQI GDVHSVLPTRG FDLPPLPAALPEYSLE EAAXXXXXXXXXX PRDHA+SVAEEIAQKIAEG GPDVGGRATAGE QLTPSGFRAAALQSVTGHV IRERRAAETGTXXXXXKAPAG+DPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPSQVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKED+EI+ENIYPEYQRGFMNARYDQQ+L YRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQAT+QPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DENA ESVEGEWHLEFVSNDGGEEG QEGWDLASSTDPEKKERLA+LKEAGSEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDEA+R +VGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRLSSSSSSPTVTNGGAANKSLFQ
Sbjct: 1 MDAGEDFDQLDGIPGMPETIGIGPILRSNATKSIDIRFGGVTFSRNGQIRGDVHSVLPTRGAFDLPPLPAALPEYSLESEAAXXXXXXXXXXVPPRDHAASVAEEIAQKIAEGGGPDVGGRATAGELQLTPSGFRAAALQSVTGHVEIRERRAAETGTXXXXXKAPAGIDPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPSQVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDKEIIENIYPEYQRGFMNARYDQQMLQYRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQATTQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDENALRESVEGEWHLEFVSNDGGEEGAQEGWDLASSTDPEKKERLAVLKEAGSEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDEASRLMVGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRLSSSSSSPTVTNGGAANKSLFQ 643
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A6H5KLG4_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE) HSP 1 Score: 1100 bits (2845), Expect = 0.000e+0 Identity = 636/881 (72.19%), Postives = 656/881 (74.46%), Query Frame = 1
Query: 1 MGHGSRCCSPLLLLLTLSAVARGFHLRVPLSATARIRTGTFGSTTGVRTLSGPPVASARRRGGGPTMDAGEDFDQLDGIPGMPETIGIGPILRSNATKSIDIRFGGVIFSRNGQIPGDVHSVLPTRGGFDLPPLPAALPEYSLEGEAAXXXXXXXXXXXXPRDHASSVAEEIAQKIAEGSGPDVGGRATAGEQQLTPSGFRAAALQSVTGHVGIRERRAAETGTXXXXXKAPAGVDPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP-------------------------------------------------------------------------------------------------------------------------------------------------------SQV------------------------VVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQATSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDENAPGESVEGEWHLEFVSNDGGEEGVQEGWDLASSTDPEKKERLAMLKEAGSEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDEANRFVVGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRLSSSSSSPTVTNGGAANKSLFQ 2118
MGHGSRCCSPL+LLLTLSAVARGFHLRVPL++ ARIRTGTFGSTTGVRTLSG PVASARRR GGPTMDAGE+FDQLDGIPGMPETI +GPILR+N T+SID RFGGV FSRNGQI GDVHSVLPTRG F LPPLPAALPEYSLE EAA PRDHA+SVAEE+AQKIAEGS PDVGG ATAGEQQL PSGFRAAALQSVTGHV IRERRAAETGT +APAG+DPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP SQV VVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGD LFGQMMDLTLKED+EI+ENIYPEYQRGFMNARYDQQ+L YRKAITNFQATAAERAN QLETSLQMELLNRISRSERGLASTR DRSAILDLIRRLEDVQAT+QPXXXXXXXXXXXXXXXXXXXXXXXXXX DENA ESVEGEWHLEFVSNDGGEEGVQEGWDLASSTDPEKKERLA+LKEAG EALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSG TTTVQLDAV+EPLKDEANR +VGFRKAIV++GGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR SS SSP VTNGGAANKS FQ
Sbjct: 1 MGHGSRCCSPLVLLLTLSAVARGFHLRVPLTSIARIRTGTFGSTTGVRTLSGRPVASARRRVGGPTMDAGEEFDQLDGIPGMPETIDMGPILRTNVTESIDTRFGGVTFSRNGQIRGDVHSVLPTRGAFGLPPLPAALPEYSLESEAAATAAAVASGAVPPRDHAASVAEEVAQKIAEGSDPDVGGLATAGEQQLMPSGFRAAALQSVTGHVEIRERRAAETGTGTGKARAPAGIDPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPYHGFEFESNGRLAHMPGAGRPKGSAAVARAAGRPATADAADKAKACGGRKAPTYPVKESAGWIYIFPDETRPGSVEQHLDPVVIPEAVSPQFRCIQGSMDFKGGVDASVENMLDMLHISFVHSFGNQQDPTPFAVSYERGFDDPGTEALATSQVTFRYRSGSKSFSKVVGKSTEXGCVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDLLFGQMMDLTLKEDKEIIENIYPEYQRGFMNARYDQQMLQYRKAITNFQATAAERANAQLETSLQMELLNRISRSERGLASTRSDRSAILDLIRRLEDVQATTQPXXXXXXXXXXXXXXXXXXXXXXXXXXA---DENALRESVEGEWHLEFVSNDGGEEGVQEGWDLASSTDPEKKERLAVLKEAGGEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGLTTTVQLDAVVEPLKDEANRLIVGFRKAIVSIGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRRSSFLSSPPVTNGGAANKSFFQ 878
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A836CFS0_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS0_9STRA) HSP 1 Score: 400 bits (1029), Expect = 1.680e-125 Identity = 265/617 (42.95%), Postives = 336/617 (54.46%), Query Frame = 1
Query: 694 PAGVDPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP-----------------------------------------------------------------------------------------------------------------------------------------------------------SQVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQATSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE------------NAPGESVEGEWHLEFVSNDGGEEGVQEGWDLASSTDPEKKERLA----------MLKEAGSEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDEANRFVVGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKG 2013
P V VPNLWLAV H S +K +V KV VDG PIA+WRTSTG + A SD+CIHRGASLA+GW+ DRLVCP +VVV+NE+HLPY AVIRV+FG + +KTI A AVP +G+TTLHWKLYRNF +THP+D+GP+N A D LF QMM +TL+ED++I+E IYP YQRG+MNA++D+QVL +RKA FQ +A R++TQLE++LQMELL RI+ + RG A + DR AIL LI +LE V + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX ESV GEWHL++++ G G D +++DPE +A +L++AG EA L DW + GRPLWADT ESVQIIDT ++ ++NRA Y+GWSG TTVQLDA+ + ++ ANR ++ FR+A V++GG+K++FPHL RFSP GW+ETTY+N +RIARGNKG
Sbjct: 145 PPNVCTDSVPNLWLAVGHMSSLKGKKVLKVTVDGKPIAIWRTSTGELKAISDICIHRGASLAKGWLHQDRLVCPYHGFEFDGHGTLQYMPGVTKEGVTKQGCSGSGRKTQAYLVREKNGWIYLFPDAARPGAIEQYSEPFTIAEASDPRFRYVEGSVEIGGDAAACMENMLDLLHISYVHSFGNLNSPVPFEVDYNHSYDDANGALASTSVTFRYKSGPKSFSKVVGKSPEVVVRNEYHLPYHAVIRVFFGEDCIKTIHAAAVPSEEGKTTLHWKLYRNFFMTHPMDQGPLNAAADLLFRQMMRVTLQEDKDIIEAIYPGYQRGYMNAKFDKQVLFWRKAYDRFQEVSAARSSTQLESALQMELLARIAGTRRGNAQSTSDRRAILRLIEQLETVSPPAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAESVGGEWHLQYMAEPKG------GGDAGANSDPEVSAEVADAVLSAVDGQVLQQAGGEAYLLDWNQNGRPLWADTEESVQIIDTDSQIISNRASYRGWSGLRTTVQLDAIFKACEENANRLLIEFRRAAVDIGGLKLSFPHLSRFSPRGWLETTYVNDHLRIARGNKG 755
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A4D9DEC4_9STRA (Rieske domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA) HSP 1 Score: 229 bits (584), Expect = 2.630e-60 Identity = 166/480 (34.58%), Postives = 227/480 (47.29%), Query Frame = 1
Query: 919 QVVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQATSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDENAPGE------SVEGEWHLEFVS---------NDGGEEGVQEGW---DLASSTD---------------------------------PEKK--------------------------------ERLAMLKE----AGSEALLFDWKET-GRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPL-----------------KDEANRFVVGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPV 2043
+VVV+NEFHLPY V RV FG + +KTI AVP DG T +H+KLYRNF HP DE P+NK D F +M LTL ED+EI+E++Y E+Q G++ +RYD+ + +YRKA+ F + R +L+MELL I +ERG +TRG S IL +++ LE A +E GE +V G WHL + + +D +EG Q+ DL + D PE+K E+ A L+E AG E L D+ + GRPLW DT ES Q IDT L+N AVY+G G TT V+L+ +I +++ +R V F A V+VGG KVTFPH+ F GW++TT++++ IRI RGN+GSIFVLTR+P+
Sbjct: 485 EVVVENEFHLPYTTVTRVKFGKD-VKTIYVVAVPVEDGLTVVHYKLYRNFMYVHPQDESPVNKGLDHFFQSVMRLTLNEDKEILESLYQEHQAGYVLSRYDKPLKIYRKALKEFMEASKSREFLAERRALEMELLRLIECTERGRKATRGQHSMILSIVQGLERGFARQ-----------------------------FKDEEGGNGEVVIEDSAVNGTWHLVYANPGDLASLPPDDEQKEGEQQSLRMQDLRPALDATATAAGGPYPWRTMTPRQQQRVTREARERMQQPEEKGGSAHSLPAAEPASKPLPRSPRETDDVLLYSEEKSARLQERLRSAGGERYLLDFTPSKGRPLWVDTDESTQTIDTSKNLLSNTAVYQGLLGITTKVELNGIISTPAGGQKSKGDALGVEDGGRNKGHRQDVQFTSAKVDVGGFKVTFPHMDVFGVNGWLDTTFVDEHIRICRGNRGSIFVLTRRPL 934
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A7R9YCQ8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ8_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.590e-31 Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 922 VVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYRKAITNF 1260
V V+NEFHLPY A+IRV+FG S KTI A+A P + +T L++KLYRNFAITHP DEGPINK D +F +MD+TL ED+EIVE++Y + GFMN +YD+ L YR+A+ +F
Sbjct: 99 VRVENEFHLPYTAIIRVHFGE-STKTIVASATPVSAKKTRLNYKLYRNFAITHPKDEGPINKILDKVFLVLMDITLNEDKEIVESLYEHARVGFMNGKYDKHQLSYRRAVQDF 210
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A6U4DAF0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DAF0_9STRA) HSP 1 Score: 135 bits (339), Expect = 2.000e-29 Identity = 103/358 (28.77%), Postives = 134/358 (37.43%), Query Frame = 1
Query: 727 LWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLV-CP---------------------------------------------------------------------------------------------------------------------------------------------------------------------SQVV-------VKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYRKAITNFQATAAER 1281
+WL VAHS+DV + K +E+DG+PI +WR +G +SA SDVCIHRGASLA+GW++ V CP S+VV V+NEFHLPY A+IRV+F S S KTI A+A+P T L++KLYRNFAITH DEGPIN D +F M +TL ED+ IVE++Y +Y+ G MN +YD+Q L YR+A+T ER
Sbjct: 238 VWLTVAHSADVPKMKTKLIEIDGIPIVVWRDQSGRLSALSDVCIHRGASLAKGWVSKSGCVACPYHGFEYEHDGALVRTANVMGRDEHETEQEAIDRIGRIPGDPPQTVSYPVREAGGWIQVFPRSTVEAFGQLHAPETVLEPLHYPELSTPGFRAIQGSVDINGSVDATMENVLDMLHISYVHLFGNAQEPLPISTDYSSSYDDPDPNRRLLKSGKVVFTYNAGPRAWSKVVGGADVVRVENEFHLPYTAIIRVHF-SGSTKTIVASALPLGKKRTRLNYKLYRNFAITHEKDEGPINWFVDRIFEFFMMITLNEDKVIVEDLYEDYRVGLMNGKYDKQQLTYRRAVTELLTKIDER 594
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A2R4ZML2_9CREN (Ring-hydroxylating dioxygenase n=1 Tax=Desulfurococcaceae archaeon AG1 TaxID=2027460 RepID=A0A2R4ZML2_9CREN) HSP 1 Score: 81.6 bits (200), Expect = 4.570e-13 Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 706 DPTRVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP 915
DP V N W VA SSD+ G V + + G I LWR+S+GS+ A D+CIHRGA L+ GW++NDRLVCP
Sbjct: 3 DPVLV-NDWHVVARSSDLPVGRVLRARLLGEDIVLWRSSSGSIMAWQDLCIHRGARLSLGWVSNDRLVCP 71
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A7R9YDM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDM5_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.600e-12 Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 727 LWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIA-NDRLVCP 915
LW++VAHSS V KKV V +PI LWR ++ +SA SDVCIHRGASLA+GW+A N + CP
Sbjct: 187 LWMSVAHSSSVPRMTAKKVTVGDIPIVLWRDASDRLSALSDVCIHRGASLAKGWVAENGCITCP 250
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: A0A6C0AW45_9ZZZZ (Rieske domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AW45_9ZZZZ) HSP 1 Score: 75.5 bits (184), Expect = 6.600e-11 Identity = 42/107 (39.25%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 922 VVVKNEFHLPYRAVIRVYFGSNSLKTIEATAVPRADGETTLHWKLYRNFAITHPLDEGPINKAGDFLFGQMMDLTLKEDREIVENIYPEYQRGFMNARYDQQVLLYR 1242
VVV+NEF+LP V RV +KTI P E+ LH+ LYRNF + D LF M+LTLKED +I+ +Y +Y G M+ +D L YR
Sbjct: 237 VVVENEFYLPDTTVTRVKANDQLIKTIVTHCYPIGKNESILHYDLYRNFMTSSLFDP---------LFNYQMELTLKEDIDILNQLYEDYNSGIMHTEFDVTQLKYR 334
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Match: UPI001E57F684 (aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Komagataeibacter sp. FNDCF1 TaxID=2878681 RepID=UPI001E57F684) HSP 1 Score: 72.4 bits (176), Expect = 6.680e-10 Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 724 NLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP 915
N W AVA+S+D++ G + + + G + LWR+ +G V A D+CIHRGA L++G IAND +VCP
Sbjct: 20 NEWHAVAYSTDIEKGNILPLTLLGRDLILWRSDSGEVHAWDDLCIHRGARLSKGCIANDTVVCP 83 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18172.1 >prot_Ecto-sp6_S_contig9.18172.1 ID=prot_Ecto-sp6_S_contig9.18172.1|Name=mRNA_Ecto-sp6_S_contig9.18172.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=707bp MGHGSRCCSPLLLLLTLSAVARGFHLRVPLSATARIRTGTFGSTTGVRTLback to top mRNA from alignment at Ecto-sp6_S_contig9:1586153..1592218- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18172.1 ID=mRNA_Ecto-sp6_S_contig9.18172.1|Name=mRNA_Ecto-sp6_S_contig9.18172.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6066bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1586153..1592218- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1586153..1592218- >mRNA_Ecto-sp6_S_contig9.18172.1 ID=mRNA_Ecto-sp6_S_contig9.18172.1|Name=mRNA_Ecto-sp6_S_contig9.18172.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2121bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1586153..1592218- (Ectocarpus species6 EcLAC_371)back to top |