mRNA_Ecto-sp6_S_contig9.18160.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18160.1
Unique NamemRNA_Ecto-sp6_S_contig9.18160.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1488640..1489592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size353
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001710.3
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.229881-CDS-Ecto-sp6_S_contig9:1488641..14889471682350514.229881-CDS-Ecto-sp6_S_contig9:1488641..1488947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1488642..1488947 -
1682350514.2382069-CDS-Ecto-sp6_S_contig9:1489547..14895921682350514.2382069-CDS-Ecto-sp6_S_contig9:1489547..1489592Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1489548..1489592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18160.1prot_Ecto-sp6_S_contig9.18160.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1488642..1489592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18160.1

>prot_Ecto-sp6_S_contig9.18160.1 ID=prot_Ecto-sp6_S_contig9.18160.1|Name=mRNA_Ecto-sp6_S_contig9.18160.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=117bp
GGVSANRRLGCDPDRQQQQQQQPQKQRRHQSSPSLSSATLPPFSSSSSMP
RRATIGGLEGSTKEGARWTSQHQQQQRQPAKMREVSLRFAETPQRQQQQK
QRQTGRGKSPATRGGDA
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mRNA from alignment at Ecto-sp6_S_contig9:1488640..1489592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18160.1 ID=mRNA_Ecto-sp6_S_contig9.18160.1|Name=mRNA_Ecto-sp6_S_contig9.18160.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=953bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1488640..1489592- (Ectocarpus species6 EcLAC_371)
GGCGGCGTGAGTGCGAACCGCAGGCTCGGCTGCGACCCAGATCGGGTGAG
CGAGTTATGGTCGAGAGATAGATTGCGTAAAATATGGTGGATTTCGTTGA
TCCACCACCCTGTGTATGGGTGTTTAGAACAAACGAAAAAATCAAGAGCT
AGAAAAATTCGGCCAATTGGCGGGCGTAGAATGAGTGCCGGAAACCGTGG
AAGTGCTCCGCACGGACACTCTGTCTTTTCCGAGTCTCTAACCTGCTTTT
TGTCGAGCCTATGCGTTTACTGCCTGCTTCAATCAAAGGATTGGCTTGAC
AGCCACAACCTTGCATGACGTTCGTTAGGTGACAGGAGTAAATCATGTCG
TGCTTGAGCACTGCCACTGTTTTTTTCTTATTGTTGCGCGGATAGGCAAA
GCGCGCACTTTTCCATCGAACTCTCGAACTTCCATCGTCACTCACCGTGT
TCCCAGAGTCTTTCTTTGTTCGGTTGTGTGTGTCCGAGATGCGGATGCCT
GCGTTCCCGCTACCGTTCCAGACAAACAATAAAGTCCTTCGCAGAGTTTT
AACCACCTTCCTCTGGTTCCCGCTCTAGACCTCGCAAATCCTCCGCATTT
TCGATCCCCCTTCACCCACGTTTTGCTTGTATTGCCTACTACTAGCAGCA
GCAGCAGCAGCAGCAGCCGCAGAAGCAGAGGCGACATCAGAGTTCGCCGT
CCCTCTCGTCAGCCACACTTCCGCCTTTTTCATCTTCATCCAGCATGCCG
CGGAGGGCCACAATAGGCGGGTTGGAGGGCAGTACAAAGGAGGGAGCAAG
ATGGACCTCTCAACATCAGCAGCAGCAGCGGCAACCCGCCAAAATGCGGG
AGGTCAGCCTGAGGTTCGCAGAAACCCCACAAAGGCAGCAGCAGCAAAAA
CAACGACAGACTGGACGGGGAAAGAGCCCTGCTACGCGGGGAGGAGACGC
GGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1488640..1489592-

>mRNA_Ecto-sp6_S_contig9.18160.1 ID=mRNA_Ecto-sp6_S_contig9.18160.1|Name=mRNA_Ecto-sp6_S_contig9.18160.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1488640..1489592- (Ectocarpus species6 EcLAC_371)
GGCGGCGTGAGTGCGAACCGCAGGCTCGGCTGCGACCCAGATCGGCAGCA
GCAGCAGCAGCAGCAGCCGCAGAAGCAGAGGCGACATCAGAGTTCGCCGT
CCCTCTCGTCAGCCACACTTCCGCCTTTTTCATCTTCATCCAGCATGCCG
CGGAGGGCCACAATAGGCGGGTTGGAGGGCAGTACAAAGGAGGGAGCAAG
ATGGACCTCTCAACATCAGCAGCAGCAGCGGCAACCCGCCAAAATGCGGG
AGGTCAGCCTGAGGTTCGCAGAAACCCCACAAAGGCAGCAGCAGCAAAAA
CAACGACAGACTGGACGGGGAAAGAGCCCTGCTACGCGGGGAGGAGACGC
G
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