mRNA_Ecto-sp6_S_contig9.18159.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18159.1
Unique NamemRNA_Ecto-sp6_S_contig9.18159.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18159.1 vs. uniprot
Match: D7G0N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N9_ECTSI)

HSP 1 Score: 835 bits (2157), Expect = 3.730e-299
Identity = 452/497 (90.95%), Postives = 458/497 (92.15%), Query Frame = 1 
Query:  100 MTADTVVGRRLSYGGGESGLLEAGSSSGYQHLEVHPASAARKGKKNGGSKRAXXXXXXXXXXXXXXXXXXXVKARKEGGRRLLQASTDGALLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNTFFAKDEEGVPTTWYITQASPDSTFFLSLESDVFEPADLEGLEDLLQPWVRNNDPNCGSCISKLRMSCSAWTADAIAAAPVTTTPAPNDXXXXXXAENENSMMSTAETVVPPATTPXXXDLPTDTTMADTSAVGGCTNLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGANRTDVVFSTTMNVCASGYGVVDADWADRVEYLPPTSTVNAVFLMYVAENVGVDTADDAAATIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAAAADTRYGGEEEQGTASLSSNSTALVPVGSEPNARWLSTMFAL 1590
            MTADTVVGRR SY GGESGLLEAGSS GYQHLEVHPASAARKGKKNGGSKRA  XXXXXXXXXXXXXXXX V+A K GGRRLLQAS DGALLPAC+SLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGN FFAKDEEGVPTTWYITQASP+S FFLSLES VFEPADL+  ED+LQPWVRNNDP CGSCISKL MSCSAWTAD IAAAPVTTTPAPND  X   AENENS MSTAETVVPPATTP   DLPTDTTM DTSAVGGC NLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGA+RTDVVFSTTMNVCASGYGVVDADWA  VEYLPPTSTVN VFLMYVAENVGVDTADDAAA       SSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAA ADTRYGGEEEQGTASLSSNSTALVPVGSEPNARWLSTMFAL
Sbjct:    1 MTADTVVGRRASYRGGESGLLEAGSSGGYQHLEVHPASAARKGKKNGGSKRAKKXXXXXXXXXXXXXXXXKVEANKGGGRRLLQASADGALLPACSSLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFAKDEEGVPTTWYITQASPNSKFFLSLESAVFEPADLKDPEDMLQPWVRNNDPTCGSCISKLHMSCSAWTADVIAAAPVTTTPAPNDPVXSSPAENENSTMSTAETVVPPATTPAPTDLPTDTTMVDTSAVGGCANLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGADRTDVVFSTTMNVCASGYGVVDADWAVGVEYLPPTSTVNTVFLMYVAENVGVDTADDAAA-------SSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAATADTRYGGEEEQGTASLSSNSTALVPVGSEPNARWLSTMFAL 490
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BLAST of mRNA_Ecto-sp6_S_contig9.18159.1 vs. uniprot
Match: A0A6H5JU08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU08_9PHAE)

HSP 1 Score: 777 bits (2006), Expect = 3.760e-276
Identity = 439/498 (88.15%), Postives = 448/498 (89.96%), Query Frame = 1 
Query:  100 MTADTVVGRRLSYGGGESGLLEAGSSSGYQH-LEVHPASAARKGKKNGGSKRAXXXXXXXXXXXXXXXXXXXVKARKEGGRRLLQASTDGALLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNTFFAKDEEGVPTTWYITQASPDSTFFLSLESDVFEPADLEGLEDLLQPWVRNNDPNCGSCISKLRMSCSAWTADAIAAAPVTTTPAPNDXXXXXXAENENSMMSTAETVVPPATTPXXXDLPTDTTMADTSAVGGCTNLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGANRTDVVFSTTMNVCASGYGVVDADWADRVEYLPPTSTVNAVFLMYVAENVGVDTADDAAATIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAAAADTRYGGEEEQGTASLSSNSTALVPVGSEPNARWLSTMFAL 1590
            MTADTVVGRR++YGGGESGLL AGSS GY+H LEV PA+ A + KKNGGSKRA   XXXXXXXXXXXXXXX V+A K GGRRL QASTDGALLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGN FFAKDEEGVPTTWY+TQASP+STFFLSLES VFEPADLE L    QPWVRNNDP C SCISKL MSCSA TADAI  AP TTTPA   XXXXXXAENEN  MSTAETVVPPATTPXXX LP DTTMADTSAVGGC NLKINNGEDRAGVYSLS VDGEGGVVFRNGRPSYAAVGANRTDVVFST MNVCASGYGVVDADWA+ V YLPPTSTVNAVFLMYVAENVGVDTADDAAA IATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWID GCA AGEVEEA AAA  T YGGEEEQGTASL SNSTALVPVG EPNARWLSTM AL
Sbjct:    1 MTADTVVGRRVNYGGGESGLLGAGSSGGYRHHLEVQPAATANQSKKNGGSKRAKKSXXXXXXXXXXXXXXXKVRANKGGGRRLQQASTDGALLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFAKDEEGVPTTWYVTQASPNSTFFLSLESAVFEPADLEDL----QPWVRNNDPTCRSCISKLSMSCSALTADAIPTAPETTTPAXXXXXXXXXAENENLTMSTAETVVPPATTPXXXXLPPDTTMADTSAVGGCANLKINNGEDRAGVYSLSDVDGEGGVVFRNGRPSYAAVGANRTDVVFSTMMNVCASGYGVVDADWANHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAAAIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCAAAGEVEEASAAAVATGYGGEEEQGTASLWSNSTALVPVGWEPNARWLSTMLAL 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0N9_ECTSI3.730e-29990.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU08_9PHAE3.760e-27688.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1484215..1486579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2243
Hectar predicted targeting categorychloroplast
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001700.1
Cds size1593
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350532.4034705-UTR-Ecto-sp6_S_contig9:1484214..14845071682350532.4034705-UTR-Ecto-sp6_S_contig9:1484214..1484507Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1484215..1484507 -
1682350532.4141917-UTR-Ecto-sp6_S_contig9:1484629..14849861682350532.4141917-UTR-Ecto-sp6_S_contig9:1484629..1484986Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1484630..1484986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350532.4241953-CDS-Ecto-sp6_S_contig9:1484986..14865791682350532.4241953-CDS-Ecto-sp6_S_contig9:1484986..1486579Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1484987..1486579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18159.1prot_Ecto-sp6_S_contig9.18159.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1484987..1486579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18159.1

>prot_Ecto-sp6_S_contig9.18159.1 ID=prot_Ecto-sp6_S_contig9.18159.1|Name=mRNA_Ecto-sp6_S_contig9.18159.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=531bp
MSNTAAVSLAALSVVLGLTTTPCSGGTSLRGSAMTADTVVGRRLSYGGGE
SGLLEAGSSSGYQHLEVHPASAARKGKKNGGSKRAKKSKESKKAGRAKKS
KKSKVKARKEGGRRLLQASTDGALLPACASLFVPTGAGDELTGTYDFQGH
YSDRRPVYAAANGNTFFAKDEEGVPTTWYITQASPDSTFFLSLESDVFEP
ADLEGLEDLLQPWVRNNDPNCGSCISKLRMSCSAWTADAIAAAPVTTTPA
PNDPVPSSPAENENSMMSTAETVVPPATTPAPTDLPTDTTMADTSAVGGC
TNLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGANRTDVVFSTT
MNVCASGYGVVDADWADRVEYLPPTSTVNAVFLMYVAENVGVDTADDAAA
TIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEAT
SWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAAAADTRYGGEEEQ
GTASLSSNSTALVPVGSEPNARWLSTMFAL*
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mRNA from alignment at Ecto-sp6_S_contig9:1484215..1486579-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18159.1 ID=mRNA_Ecto-sp6_S_contig9.18159.1|Name=mRNA_Ecto-sp6_S_contig9.18159.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2365bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1484215..1486579- (Ectocarpus species6 EcLAC_371)
ATGTCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCCGTCGTCCTAGG
CTTGACCACCACACCTTGCTCAGGTGGCACCTCCCTGCGTGGATCGGCCA
TGACCGCAGATACCGTGGTGGGAAGGAGGTTGAGCTACGGCGGCGGCGAG
AGTGGTCTTCTTGAGGCCGGAAGCAGCAGTGGGTACCAACATCTGGAGGT
GCATCCAGCGTCGGCGGCCAGGAAGGGCAAGAAGAACGGCGGCTCCAAGA
GGGCTAAGAAGAGCAAGGAGAGCAAGAAGGCCGGACGCGCCAAGAAATCC
AAGAAAAGCAAGGTCAAGGCTCGCAAGGAAGGCGGCCGCAGGCTGCTACA
AGCGTCCACCGACGGCGCCCTGCTGCCGGCGTGCGCTAGCCTGTTCGTTC
CTACGGGGGCCGGGGACGAACTGACCGGCACGTACGACTTCCAGGGCCAC
TACAGCGACCGGAGGCCGGTCTACGCCGCCGCAAACGGCAACACGTTCTT
CGCGAAAGACGAGGAGGGGGTACCTACCACGTGGTACATCACCCAGGCGT
CGCCCGATTCGACGTTCTTCCTGTCCCTCGAATCGGACGTTTTCGAGCCG
GCCGACCTGGAGGGCCTGGAGGACCTGCTGCAGCCCTGGGTCAGGAACAA
CGATCCCAACTGCGGGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCG
CCTGGACCGCCGACGCCATCGCCGCGGCGCCGGTGACCACCACCCCGGCG
CCCAATGACCCAGTCCCCTCTTCGCCTGCGGAGAACGAGAACTCGATGAT
GTCCACCGCGGAGACCGTCGTCCCCCCGGCAACAACGCCGGCACCTACCG
ATCTCCCCACCGACACGACGATGGCCGACACGTCCGCGGTCGGCGGCTGC
ACGAACCTCAAGATCAACAACGGCGAGGACCGGGCGGGCGTCTACTCCCT
CAGCGGCGTCGACGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGGCCGA
GCTACGCCGCCGTCGGCGCCAACCGGACGGACGTCGTCTTCTCCACCACG
ATGAACGTCTGCGCGTCCGGGTACGGCGTGGTGGACGCCGACTGGGCCGA
CCGCGTGGAGTACCTGCCCCCGACCTCCACCGTCAACGCCGTCTTCCTCA
TGTACGTGGCCGAGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCC
ACCATCGCCACCGCCGCCGCCTCCTCCGACAACGACGGCTGCGAGGTGCC
CGTCTGGCTCCTGGTCGCGGACGGCGCCGAGAGCCTCGACGCCGCGGGGG
AGAACACGTTCCTGTCGGTGTCCGGGGTCGACGACCCTTCCGAGGCGACC
TCGTGGGCCAAGTTCACGCCGGCGACGAGCACCACGCGCCCGACCCTGGA
GGAGAACTTCTGGATCGACTTCGGCTGCGCGGATGCCGGCGAGGTGGAGG
AGGCGTTGGCAGCAGCAGCGGACACGAGATACGGTGGGGAGGAAGAGCAG
GGTACTGCTAGCCTGTCGAGCAACTCTACCGCGCTGGTGCCGGTAGGGTC
GGAGCCCAACGCTCGCTGGCTGTCGACCATGTTCGCTTTGTGAAATGCGG
ATCGTGGGTGGGTGCAGTCTTGTTTTACGCCCGGCGTTGGGTTGAGTGGA
GGATCGACGTAGAGGTGATGTATCGATTCGCGTGCGTTTGTTTTGTGTTT
GTTGTGTTAATTGTTGAATGTGTGTTGGAATTTTTACTCGGCTTCGTCTT
GGTTTGGTTGAAACACGCAGCCCGTACCGTTCCACCTCACGAATGTGTTT
CGGTCATCTGGCGTTATTTGTTGATTGGTATTATTATTATCCTATTCTCG
TGTTTTTATTTCTTCTGTACATGATGCGTGTGTTAGTTTTGGCCCTTGGG
CGAGGTTCCTTCCTTTGTTTTTCCGTTCGATGCTAAGAGAGGAGGGATTT
GTAACCGCTGTTTTCTCCTGGGCGTTTTGATATGCCCTCGGCTTTTGTTC
TCAAGAAAAAAGCAGCGTCCTTCTTTCATAAGTAGGACCAGTGCTTTCTT
TCATCGATCTGTTTGCCGTGAGTATGGTATCCTCAGTTAGTTGTGGTATT
TGCTTGCTTGTCGGTGTATGGCGACGGTGTTGCTTTGTATCCGACGCTCT
TGCAAAGGGGGTGGTTTTCACATTGGACCGCCTTAGAAAAAAGTGTTGTG
CGTGTGGGGCGGGCTTGCATTTGTTTGAAGATACATGTGTTTGATGTGGT
TGGTTGCGGCGGCTACGTAAGCGTAGGTAGCTCTGTTGATGAGAGTATAT
TCTTGCGGCATCAATTTGTCGCCGGGCTCCGCTTCACGGTAGCCCGAAAC
GATGAGAGAGAATGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1484215..1486579-

>mRNA_Ecto-sp6_S_contig9.18159.1 ID=mRNA_Ecto-sp6_S_contig9.18159.1|Name=mRNA_Ecto-sp6_S_contig9.18159.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1593bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1484215..1486579- (Ectocarpus species6 EcLAC_371)
ATGTCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCCGTCGTCCTAGG
CTTGACCACCACACCTTGCTCAGGTGGCACCTCCCTGCGTGGATCGGCCA
TGACCGCAGATACCGTGGTGGGAAGGAGGTTGAGCTACGGCGGCGGCGAG
AGTGGTCTTCTTGAGGCCGGAAGCAGCAGTGGGTACCAACATCTGGAGGT
GCATCCAGCGTCGGCGGCCAGGAAGGGCAAGAAGAACGGCGGCTCCAAGA
GGGCTAAGAAGAGCAAGGAGAGCAAGAAGGCCGGACGCGCCAAGAAATCC
AAGAAAAGCAAGGTCAAGGCTCGCAAGGAAGGCGGCCGCAGGCTGCTACA
AGCGTCCACCGACGGCGCCCTGCTGCCGGCGTGCGCTAGCCTGTTCGTTC
CTACGGGGGCCGGGGACGAACTGACCGGCACGTACGACTTCCAGGGCCAC
TACAGCGACCGGAGGCCGGTCTACGCCGCCGCAAACGGCAACACGTTCTT
CGCGAAAGACGAGGAGGGGGTACCTACCACGTGGTACATCACCCAGGCGT
CGCCCGATTCGACGTTCTTCCTGTCCCTCGAATCGGACGTTTTCGAGCCG
GCCGACCTGGAGGGCCTGGAGGACCTGCTGCAGCCCTGGGTCAGGAACAA
CGATCCCAACTGCGGGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCG
CCTGGACCGCCGACGCCATCGCCGCGGCGCCGGTGACCACCACCCCGGCG
CCCAATGACCCAGTCCCCTCTTCGCCTGCGGAGAACGAGAACTCGATGAT
GTCCACCGCGGAGACCGTCGTCCCCCCGGCAACAACGCCGGCACCTACCG
ATCTCCCCACCGACACGACGATGGCCGACACGTCCGCGGTCGGCGGCTGC
ACGAACCTCAAGATCAACAACGGCGAGGACCGGGCGGGCGTCTACTCCCT
CAGCGGCGTCGACGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGGCCGA
GCTACGCCGCCGTCGGCGCCAACCGGACGGACGTCGTCTTCTCCACCACG
ATGAACGTCTGCGCGTCCGGGTACGGCGTGGTGGACGCCGACTGGGCCGA
CCGCGTGGAGTACCTGCCCCCGACCTCCACCGTCAACGCCGTCTTCCTCA
TGTACGTGGCCGAGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCC
ACCATCGCCACCGCCGCCGCCTCCTCCGACAACGACGGCTGCGAGGTGCC
CGTCTGGCTCCTGGTCGCGGACGGCGCCGAGAGCCTCGACGCCGCGGGGG
AGAACACGTTCCTGTCGGTGTCCGGGGTCGACGACCCTTCCGAGGCGACC
TCGTGGGCCAAGTTCACGCCGGCGACGAGCACCACGCGCCCGACCCTGGA
GGAGAACTTCTGGATCGACTTCGGCTGCGCGGATGCCGGCGAGGTGGAGG
AGGCGTTGGCAGCAGCAGCGGACACGAGATACGGTGGGGAGGAAGAGCAG
GGTACTGCTAGCCTGTCGAGCAACTCTACCGCGCTGGTGCCGGTAGGGTC
GGAGCCCAACGCTCGCTGGCTGTCGACCATGTTCGCTTTGTGA
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