mRNA_Ecto-sp6_S_contig9.18152.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18152.1
Unique NamemRNA_Ecto-sp6_S_contig9.18152.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: D8LLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV0_ECTSI)

HSP 1 Score: 522 bits (1344), Expect = 9.250e-186
Identity = 270/334 (80.84%), Postives = 271/334 (81.14%), Query Frame = 1 
Query:    1 MAWVSDESKPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHKLG 1002
            MAWVSDESKPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAME                     IWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQ          GIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGT                              LAIEIAAHSRTINAMDLHPSSMLLATVGEDLF NVWELPKCGQEGP G+VGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHKLG
Sbjct:    1 MAWVSDESKPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAME---------------------IWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQ----------GIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGT------------------------------LAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPKCGQEGPSGQVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHKLG 273
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: A0A7S2FDR9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDR9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.930e-36
Identity = 81/232 (34.91%), Postives = 120/232 (51.72%), Query Frame = 1 
Query:  307 GSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGS--VVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHK 996
            G   V D GN       G P + G A+V   ++  VGCS+GD+  FQ           L  T++ H  PI+      +   SGD  G V +W+     +++  F G+G P T L   + +  +VA +A G LR+     + + +E+AAHSR I A+D+HP+  +  TV ED +  VW LP   ++    +V L+   RV++R LTGVQF  DGS RI+  AYD   L +W +
Sbjct:   13 GLKDVMDSGN------SGMPFMRGAAVVDATQDVCVGCSNGDIAVFQMAANSNAR---LQRTVKCHEAPISTMTGGGDLVASGDDEGQVCLWN--AQFDQQAIFPGEGLPCTCLGMHNDADALVAGFAHGVLRIVQLSTREVTVEVAAHSRCIMALDVHPTQPIFTTVSEDTYMKVWALPD-SEDKSASEVALIYEERVEDRFLTGVQFTRDGSERILAAAYDSKELLVWDR 232
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: UPI00106D036C (WD repeat-containing protein 54-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D036C)

HSP 1 Score: 127 bits (318), Expect = 2.300e-30
Identity = 99/335 (29.55%), Postives = 153/335 (45.67%), Query Frame = 1 
Query:   31 LPLKLSPSLGFNNLTSSVS---TFAYIHKGDVLIY-----GLDGVLRQTLVND----GGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQ-ARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHK 996
            + LK +PS+  NN+ ++ +   ++A +HK  V +      G   V +Q         G V  M+   C     D LV+A   GVQ++  DG  +I++        S    +  +F+  ARG               +   +G   G +  F   +  QG    L  TL  H   IT  A+  +  VS D  G ++VW   + +++     G GTP T+L   +G ++A+Y++GH+R++D     L IEI AHSR IN++D+   S LL +V ED F  VW LPK        KV LV  + V +  L G +FL D         YD   + ++ K
Sbjct:    8 MALKGTPSMLPNNMATNKTKHLSYAVVHKSVVCVNTIVAAGSSPVQKQIACKGDGSAGNVTVMQAKWCHVSGRDILVIASAKGVQMYEQDGSIMIFWHSV-----SQQQLENKSFSYFARG---------ICSTLNKYLCIGTCTGSILVFDIPS--QGTTITLHKTLDHHNVGITDLASVKDKLVSADEDGNIVVWQCDQTMKKITEIRGSGTPCTSLALWNGFILAAYSSGHIRIYDLALGILKIEICAHSRCINSLDIASESCLLLSVSEDSFVRVWALPK----DSSNKVELVFQAPVSDSQLCGGRFLDDAGQSFGVSGYDLAEIVVFGK 322
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: A0A0G4F6I2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6I2_VITBC)

HSP 1 Score: 113 bits (282), Expect = 5.100e-25
Identity = 93/335 (27.76%), Postives = 146/335 (43.58%), Query Frame = 1 
Query:   28 PLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAME-VLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGG-NFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLR-GHCQPITCAAADSECC----VSGDAGGTVIVW---SIAKHLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFLV-------DGSHRIIGLAYDCDHL 981
            P+ LK SPSL   NL +S    AY H+  V  Y +D            + ++  V +        L+V +  G Q+W+ DG R++Y+   +    S+T      N     G+       +   P+  + I+G S G++   +      G+A    AT +     P+   A   E      +SG A G ++ W   +   +++   +        T +     ++   + TGHLRV+D  R+ L IEIAAH R IN +D+     L+A+VGED   NVW  P C  E     V L  ++ V   LLTGV F         +G+  +  +AYD + L
Sbjct:   14 PVVLKASPSLIHGNLVASQRRIAYAHQSKVCFYAVDSERCVDGPTTSKIISLHYVHIRKAGPKPMLIVNMANGTQMWNQDGTRMLYYLPVQHPQTSATSTSAAQNAAVDIGKCHRGAA-VCAFPQADHVIIGSSAGELIIIRT----DGDAFHSLATRKVASASPVMVVACSGEGSDQHVMSGHANGEIVWWRPEANGMYMQLPGALQHAQDTPTCMKVLGNTLYCGFGTGHLRVYDAVRRELKIEIAAHGRWINDIDVRHDG-LVASVGEDTVLNVWRCPSCDSE-----VSLAHSAVVTESLLTGVAFTQRRGDTADEGAFAVCVVAYDSEVL 337
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: A0A835YMF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMF8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.110e-24
Identity = 68/169 (40.24%), Postives = 91/169 (53.85%), Query Frame = 1 
Query:   88 TFAYIHKGDVLIYGLDGVLRQTLVNDG-GVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIA 591
            T AYIHK +V+  G  G   + L   G   RA++      +  + LVVAL+TGVQ+WS++G RL+YFF  +     S V +GG     RG        I+ V RG + +VGCSDGDVF F         A EL+ +LRGH +P+T  AA      S D GG +I W +A
Sbjct:    8 TQAYIHKDEVITLGCGGAAPRALGRGGENGRALQARFVVADAQELLVVALSTGVQMWSANGTRLLYFFSLR-----SVVAEGGPAVSCRG--------ISAVERGCHVLVGCSDGDVFVF---------AVELSRSLRGHTRPVTATAASRTIAASADMGGRIIAWRVA 154
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: A0A7M5UFF3_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UFF3_9CNID)

HSP 1 Score: 110 bits (274), Expect = 4.080e-24
Identity = 81/334 (24.25%), Postives = 148/334 (44.31%), Query Frame = 1 
Query:   37 LKLSPSLGFNNL----TSSVSTFAYIHKGDVLIYGLDGV------LRQTLVNDGGVRAMEVLL----CSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFL--VDGSHRIIGLAYDCDHLQIW 990
            +K S SL +NNL    ++S   +A +HK +V ++  + +       R+ +    G +    ++    C       LVV    G Q++  +G  +I++   +  P                 G+P               +G +DG ++ F   +  +G   +L  T+  H   +T   A  +C VS D  G +I+W +   + +    +G G P T++   +  ++A+Y +GHLR F+    T+ +E+AAH++ INAMDL     L+ T  ED F  ++++     +  K          + +  LTGV+F+  +D S  + G  YD   + I+
Sbjct:    9 IKSSASLLYNNLDVLSSASGLQYAVVHKSNVWVFDAEEIQTNQAAYRRVVCKGEGTQTSSTIMQAKWCVLPQRTLLVVGSVKGAQMFDENGSMMIFWQALQPHPKE---------------GKPQFVRGITAAGDNRICIGTADGSIYVFDIPS--KGNGVKLHDTINAHTCALTDLHALDDCMVSADDMGKIILWKVGGAVTKTLEIEGFGFPCTSVRLHENFIIAAYGSGHLRKFNCKTGTIIVEVAAHAKWINAMDLSQDGTLVVTASEDTFLRLFDVETFELKFQKA---------ITDVQLTGVRFMDAIDNSFGVTG--YDSSEITIF 314
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: A0A2C9LSC8_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LSC8_BIOGL)

HSP 1 Score: 107 bits (268), Expect = 3.140e-23
Identity = 95/341 (27.86%), Postives = 156/341 (45.75%), Query Frame = 1 
Query:   25 KPLPLKLSPSLGFNNLTSSVS------TFAYIHKG--DVLIYGLDG--VL-RQTLVND--GGVRAMEVLLCSGEDFD---FLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSI-AKHLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHK 996
            KP+ LK S S   NNL   V       ++A ++K   ++ +  +DG  VL +Q    D    +    VL C   +      LV+    G+Q++ SDG  L+Y+     +   S +        ARG     + G+     G NF+   SD  V  F   +  +G    L+ TL  H  PIT  A+D +  VS D  GT++ W +    L +  +  G+G P  ++    G +V  +A+GHLR+F+     +  E+AAH+R+INA+D+   + L+ +V +D +  +W+L          ++       V +  L G QF+ D    I    YDC+ +  + K
Sbjct:    6 KPIVLKSSTSSLCNNLAVYVLPDKRQISYAVVYKSMVNLSVATIDGNSVLGKQVGCKDPSASIGVPFVLQCKWVNLPSRTILVMTSTRGIQMFESDGVTLVYWHSLGDSLEESHL--------ARG-----IEGV-----GENFLCVGSDNSVLVFNIPS--KGPNVALSDTLHVHKAPITHLASDHDMLVSADELGTIVTWKVKGSGLVQISNIRGEGWPCNSVAVWKGIIVGGFASGHLRIFNASSGAIGAEVAAHARSINAVDISKENGLVLSVSDDTYLKIWQLKPLNIP----QIEYRHAECVTDLQLVGGQFVDDQGKVICVTGYDCNEIIFFVK 322
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: UPI000719EA49 (WD repeat-containing protein 54-like isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719EA49)

HSP 1 Score: 107 bits (267), Expect = 4.630e-23
Identity = 85/320 (26.56%), Postives = 150/320 (46.88%), Query Frame = 1 
Query:   19 ESKPLPLKLSPSLGFNNLT------SSVSTFAYIHKG--DVLIYGLDG----VLRQTLVND----GGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAK-HLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQF 927
            + K L +K S S   +NL+          ++  +HK   +++    DG    + RQ +V +    G    M++  C   +   +V+A   G+QI+ SDG  ++Y+      P S+ V      ++A  RG  +L    +        +G   G +  F+    P+G    L  +L+ H  PI+C  +      SGD  G +I+W + +  L      DG G+P + +   +  +VA+Y +GH+R+F      +  E+ AH+R INA+D+   + ++ TV ED F  +W+L    +EG   ++  +++  V N LL G  F
Sbjct:    4 KEKSLSMKGSTSALCHNLSVYTDNDKRTQSYGVVHKSVANIITIAADGANVLMQRQVIVKEPGGHGSTIVMQMKYCEFPERSLMVMACQRGIQIYESDGSVMLYWHSL-VNPESNEV------SKAYARGICTLQDSMLC-------IGTDSGTILVFEIP--PKGTNILLKESLKEHVLPISCLHSHGLVLASGDDSGCIILWRVEESQLHPYKRIDGLGSPCSGVRLWNELLVATYGSGHIRLFKVISGHMCAEVTAHARWINAIDVVHRNGMVLTVSEDSFAKIWQL----KEGDAPEIEHLSSECVQNVLLCGAAF 303
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: A7S438_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S438_NEMVE)

HSP 1 Score: 105 bits (261), Expect = 3.080e-22
Identity = 94/338 (27.81%), Postives = 142/338 (42.01%), Query Frame = 1 
Query:   28 PLPLKLSPSLGFNNLT------SSVSTFAYIHKGDVLIY----GLDGVLRQTLVNDGGVRAMEVLL----CSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFI-VGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHK 996
            P+ LK S S   NNL           T+A +HK  V +     G     RQ      G  +   +L    C   + + LV+A   GVQ++  DG  ++++   ++ P     +    F++          GI  V  G  +I VG SDG +  F      +G   +L  TL  H   I    +     VS D  G +I+W    H  +     G G P +++      V+  Y TGH+RVF+     L IE+ AH+R INA+D+ P + LL +V ED F  VW +     E  K K  +     V++  L G +FL           YD   + ++ K
Sbjct:    7 PVNLKASASSLCNNLAIWPVKEKETITYAVVHKAFVCLTNVAKGSIPTQRQVSCKGEGAHSSSSVLQAKWCELPNRNVLVIASVKGVQMFDPDGSIMVFW---QSLPPCEATEVYSQFSR----------GICAV--GDKYICVGSSDGGIMVFDVPA--RGTGVKLQETLSSHNGAICDLVSHGGKMVSSDESGHMIIWQSGGHFTQLSQIKGFGNPCSSIALLRNLVIGGYGTGHIRVFNGATGKLLIEVCAHARWINALDVAPDAGLLLSVSEDTFVRVWLI---SGEDDKPKFEMKFQHPVNDIQLCGGKFLDTQGTSFGVTGYDLPDIVVFKK 324
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Match: T0Q2G5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q2G5_SAPDV)

HSP 1 Score: 105 bits (261), Expect = 3.280e-22
Identity = 95/342 (27.78%), Postives = 158/342 (46.20%), Query Frame = 1 
Query:    7 WVSDESKPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAM-EVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVF------AFQAKTGPQGEACELTATLRGHCQPITCAAADSEC----CVSGDAGGTVIVWSIAKH-LERECSFDGDGTPATAL-CARDGSVVASYATGHLRVFDTHRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKG-KVGLVATSRVDNRLLTGVQFLVDGSHRIIGLAYDCDHLQIW 990
            WV+  ++ + + +SPSL   NL+ +    A+    DV+++      +   V+      + + L+C+ E    LV+A  +G QIW   G  L +       P S +    G +   RG        I      ++ +VG S G ++      A +AK     E   L +T++GH   +   A +        VS D  GT+IVW +    LE++    G   P T+L C +   V+    TG LR+ D H   ++ ++ AHSR ++A+D+H   +  ATVGED + +VW+L      G  G +  L  + R  + L+TGV F    S +I+  +YD   ++ W
Sbjct:    2 WVTT-AEAVEMDVSPSLLPGNLSRAGDYVAFASMEDVVVFNTTTNAKPNKVSLVEKTVVYQALVCAFEREQLLVIANESGCQIWDLLGEHLYFSLALTKEPPSGSE---GEYHFCRG--------ICAETTTKSILVGSSLGKLYMLSQTAAGEAKGRDHSEF-HLQSTVKGHNAAVQAVATNGSAKEPLAVSSDDDGTLIVWGVEPSGLEKKQVIQGTSFPTTSLRCFQTRWVLTGDTTGKLRLVDMHDGVISADVGAHSRHLSALDVHNDRV--ATVGEDGYLHVWKLKD--DAGATGLRFELEHSHRAGDDLMTGVAFA--SSTKILTTSYDSTLIKAW 324
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LLV0_ECTSI9.250e-18680.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FDR9_9STRA2.930e-3634.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI00106D036C2.300e-3029.55WD repeat-containing protein 54-like n=1 Tax=Dendr... [more]
A0A0G4F6I2_VITBC5.100e-2527.76Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A835YMF8_9STRA1.110e-2440.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7M5UFF3_9CNID4.080e-2424.25Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A2C9LSC8_BIOGL3.140e-2327.86Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
UPI000719EA494.630e-2326.56WD repeat-containing protein 54-like isoform X1 n=... [more]
A7S438_NEMVE3.080e-2227.81Predicted protein n=1 Tax=Nematostella vectensis T... [more]
T0Q2G5_SAPDV3.280e-2227.78Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1424383..1433091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score130.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog7668.SPU_008043-tr
Preferred nameWDR54
Model size1005
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.WD repeat domain 54
EggNOG OGs28JFT@1,2QRUZ@2759,39TF6@33154,3B9FN@33208,3CVNI@33213
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-14_001760.1
Cds size1005
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18152.1prot_Ecto-sp6_S_contig9.18152.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1424383..1433091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350531.5500557-CDS-Ecto-sp6_S_contig9:1424382..14244751682350531.5500557-CDS-Ecto-sp6_S_contig9:1424382..1424475Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1424383..1424475 +
1682350531.564353-CDS-Ecto-sp6_S_contig9:1425351..14254441682350531.564353-CDS-Ecto-sp6_S_contig9:1425351..1425444Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1425352..1425444 +
1682350531.5745296-CDS-Ecto-sp6_S_contig9:1427580..14276431682350531.5745296-CDS-Ecto-sp6_S_contig9:1427580..1427643Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1427581..1427643 +
1682350531.5843823-CDS-Ecto-sp6_S_contig9:1428669..14287951682350531.5843823-CDS-Ecto-sp6_S_contig9:1428669..1428795Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1428670..1428795 +
1682350531.5956876-CDS-Ecto-sp6_S_contig9:1429509..14295871682350531.5956876-CDS-Ecto-sp6_S_contig9:1429509..1429587Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1429510..1429587 +
1682350531.6060345-CDS-Ecto-sp6_S_contig9:1429938..14300451682350531.6060345-CDS-Ecto-sp6_S_contig9:1429938..1430045Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1429939..1430045 +
1682350531.6164415-CDS-Ecto-sp6_S_contig9:1430598..14306671682350531.6164415-CDS-Ecto-sp6_S_contig9:1430598..1430667Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1430599..1430667 +
1682350531.6271532-CDS-Ecto-sp6_S_contig9:1430997..14310871682350531.6271532-CDS-Ecto-sp6_S_contig9:1430997..1431087Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1430998..1431087 +
1682350531.6368377-CDS-Ecto-sp6_S_contig9:1431676..14317491682350531.6368377-CDS-Ecto-sp6_S_contig9:1431676..1431749Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1431677..1431749 +
1682350531.6471665-CDS-Ecto-sp6_S_contig9:1432069..14321371682350531.6471665-CDS-Ecto-sp6_S_contig9:1432069..1432137Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1432070..1432137 +
1682350531.657936-CDS-Ecto-sp6_S_contig9:1432663..14326731682350531.657936-CDS-Ecto-sp6_S_contig9:1432663..1432673Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1432664..1432673 +
1682350531.6680248-CDS-Ecto-sp6_S_contig9:1432956..14330911682350531.6680248-CDS-Ecto-sp6_S_contig9:1432956..1433091Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1432957..1433091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18152.1

>prot_Ecto-sp6_S_contig9.18152.1 ID=prot_Ecto-sp6_S_contig9.18152.1|Name=mRNA_Ecto-sp6_S_contig9.18152.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=335bp
MAWVSDESKPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQ
TLVNDGGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYFFDAKA
APGSSTVDDGGNFTQARGRGRPSLPGIAMVPRGRNFIVGCSDGDVFAFQA
KTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHL
ERECSFDGDGTPATALCARDGSVVASYATGHLRVFDTHRKTLAIEIAAHS
RTINAMDLHPSSMLLATVGEDLFFNVWELPKCGQEGPKGKVGLVATSRVD
NRLLTGVQFLVDGSHRIIGLAYDCDHLQIWHKLG*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:1424383..1433091+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18152.1 ID=mRNA_Ecto-sp6_S_contig9.18152.1|Name=mRNA_Ecto-sp6_S_contig9.18152.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8709bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1424383..1433091+ (Ectocarpus species6 EcLAC_371)
ATGGCTTGGGTCTCGGACGAAAGTAAGCCCCTCCCCCTCAAGCTCTCACC
TTCGCTGGGATTCAACAACCTGACGTCTAGCGTTTCCACCTTCGTGAGTA
CAGCATTACATGCGCGCAATATCTTTGCTGGCGACCGTCAAAGATACATG
TCGGCAGCAAATGCTAGATACAGACTGTCCTGCTGCTTTTTGTTGTACGT
GGGCGGGTCGGGATGCTGTCCGCTCAACACACAGGCCTTGCGGCCAGAAG
GGGTCAGATGTTAGGAAAAGACGGATACTCCACCGGGTGTGGTAACAAGT
GTGTACAGAGCAACGCGTGAGATAACACCCCCATCTTGCTAATGGCATGA
AACCCATCAGCCGCGTTTCTCAAAGGTTCAAAACAAACAAACACGTGTAC
CTTGTACAGTCATGGATATCGTACTGCGGACAGATGTGAGTAGGAAATAC
ATTCTTTGGGTAAGGCTGCCTAGGTGTGCTCATATCGAACGAAGTAGTAA
AAGGCGTTGTGGCACCGCCCTGCCGCCACGGCGTTTCCCTCTTTTGAGTA
TCTTCAAACTCCACGGACGCAACTTCTCGTGCATTTTCCCACGATATAGC
GCCAGTCTTGGATGACAGGTGATGCCTATCTAGATACAGAATGAATGCGA
AAACATGATTAGCGAAAGGTCTTATTGGATCCCGCAGGAGGCGGCCAGAG
TTAACAAAATAGGTCAGACTGGAAGGTTAGAAAGGGTGGGGTGCGAGAAG
TTGAGTGGCATGGAAAATGGTGCTCTTGTCGAGACTAGCCTTGACTACAA
CCCCTGTACGTCTCCAATAAGCTTTCCCCTGTTCAAAGTTCTTTGAGTTT
CACCGGGCGCTTGCTTGTCGGACTGCATGCTTGTCCCTGTGTTATCTGAA
CGTGGATGCTAACTAGCTTGAATGCACGTCGTGCGCTTCACATTTCTTCC
AATCTCGCGAATGCCACAGGCCTACATTCACAAGGGCGATGTGCTCATCT
ACGGGCTTGACGGAGTGCTGAGGCAGACTCTGGTCAACGATGGTGGGGTA
CGGGCTATGGAGGTGAAGATTTTTCGGTTTAGTATTCAATAAAGTCGAAC
TAGCATGCCTTGGCAATGTAGAATACCGTGGGAGTGGAGAGACGGCACCG
GGGGGGGGCGTACTCTTATGTTTTGCATGCCTTAGCGATTAGACCATTGA
CCACGCGTCCTCGAGAGGACGGAGCATTGTCCCCACAGGACCGATCACCG
ATGGCCAATCGTTCCTTCCTACTTTGCCAAAGGTGGCTCAAAAATGTCTT
CCCTAGTCTGTCTATCCTAACGATATCCCTTCCCGCCTTTTCAAACCACT
TCCTACTCCCCAGTACAGCTACCGTCCTCTCCTCTCTATTCCATGCCTCA
AACATCTCCCTGTACGTCCCTTGTATGTTTCCCAGCTCAGTCATGTACAC
TTCCCTCTCCTCTTCGTACCACGGACATTCCGCGACTACATGAACACGGT
CTTCGCATTCGAAGCCGCAATCACATTTGAACTTGTCGTCTTCGTCGTCT
ACCGTCCTATGTCTTCGTCGACGTTCTCGAAGGCCCATGTCCCCGGTCCT
GAATTTGACCTTAAGCTTTGGCCCTGCATCTATTGGTCCTTGTAGGTAAT
CCTTGAACCCTATTCCTTCTTTCAACATTCTGTACACTTCTAGACCCTCC
TTATCCTTGGTTTCTTTCCTTAGATTCTGTTCTTCTCTCTCGGCAAAAGC
AACAGATATCTTCTCCTTGAACCCCTGTAGACCCTCCGTTGCCAGCGACG
GCACCGGGGTGCGAAAAAAAACAAGAACAGCGTGATTTTATTGTACTTCC
GCAACGGGGTCTGGTGCGATCTCACCGATCCTCAAATCCAAGATTGAGCT
CTTTCTGGCCTGCCGTAAAGAGGTACACTTGCGCCCCTTTCACGTGTGAA
CACAGGTGTCAACGGAGCGCGACCTTTACGTATCTATGTACGGTCGGCGC
AGTTCACGCGGGATCGTCTGTTGTTTTCATGTGATCAGTATGGAAGTTGC
AAACCATACACCACTCAAGTGCAACCTACCCCCACCTTCGGCAGCAAGTA
AATACATTGTGCTGCTTGCGTACTGGTTCTCGTAGAGGATGACCGAAACG
AAAGAGGGAGGCAAACAGACACCGTTTTTACCGGTACCCCAGATGGAAAC
CGCATCGTTTGTTGTTCTTTTGTCATTCAAAAGCCGAACTCGCATTCAAA
CCCATGACCATTCGCTGCATGGAAAACTGCTATGCACCAGCCTACGTTGT
GAATATGTACGGTACGCCGCACATCGTCTGCTTGTGAGTACCTACATGGT
ACCAATACTCAGAGGGGGAGAGACACACCGGTCGGGGACATGGCACCGGG
GTGCGCGCAAACAACACCACCGTAGCACTACAAGTAAGACCGCTGTCTGT
ATTTGATTGGGCATTGCGCCGGTCGGAGAGATCGCACCGGGGTGCCTTGA
AAAGAACTAAACGAGATTATTTACTTGCATTCCCGCACCGGGGTTGGAAA
GATCCCACAGAGGTGTGACAATAAACACGAAAAAAGAGTATCTTATAAAT
CGACCGCACCTGGTGCCGTCTCTCCGACTCTTACGGTACTTTCACGGCCG
GCTCCTTGCGAAAGAAAGCCCCATTGGCGAAGGGAAGCACTTGTTGCAGT
CGGTCGAAAATTGTGGAGCACAACAAGCATCACCCTAAGTCAGGCTTGGC
AAGGCACTGCGTCATTGGCTTGGCTTCCTATAAAATAGAATATTCTCCGT
GTGCGGATAGCCGGAACTTCTCATGGCTTGTCGATCCCAACCATGAGTCA
AGACTACCCAAGCGCATCCACCACCCCGCCATCACAACTCTTCGTAATAA
CGTGGCATCGATGACTGTACAAAGTTCTTGCCGACGAGTTTTACCTGATT
GATTGCGTACGCCGGTCGCCACACGGCACACCAAGCAAGGCATACCTGCG
TATTGTGGAGGTGGAGAATGTTGGTGTGGGCGATTTCACGGCCGATAGTG
TTCTACCACGACGACACCATAGTATGTTGTCTCGTGGCTCCTGGTGGCTT
GTTTTATCCCCGTGAACACGTTTACTGCGCGTTTGACGTTTCCTGGAGTG
CTTGACCACAGGCTAACGTCGTACACGTATATGCATGCAACACACAAGGT
GCTCTTGTGCTCGGGCGAAGACTTCGACTTCCTTGTGGTGGCCCTCAACA
CGGGGGTGCAGGTAATTGCTTTAGTCTACTACAACAAATAGCAGTGGTAA
AAAGGTATCTCGGTATGAGCTCATCTTTTTGCTGTACTGTGTTCTCGAGA
AAAATGAAAACAAAGCGCAGAGAGAATCATATTCGAATACATAAGATGGA
CAACATAGGGTATTTGGAAGGAGAGGCGGTTTAGAGTTGGCTGCAGTTCT
GCGTGGACGGAACCCACACACAATACAAGAGCCAACAGGAGAGGGTGTGT
GAGTGTTTGAGTCATTCCTGGCGCCAGCGAACGTGCCACCTGGCTTGTGG
CTTGCCACTTGCGATAAACGCCTGCCTCGGGAAAATGACTTTAGGTACCC
ATTATTAGTAGGGTGGGCGTCGCGGGCTCGGGACATGGCAACCAGCAGAC
GTCGTCACAGATAGCCCTCGGTAAATGTTTTTTTTATCTGTCGGCGTTTG
TTGGACTATGCACGGCAACCTGGGCAGGCACAAGACGTTCTGAGGCCGCT
CTCCTCCAACGTGTACGAGCTCGGCGTGTTTCTGCTGTTCTCTCGTCATA
TTCCTTCTTCACCTATGATTTCGTGTCTTGTGCTTGGCTCAGGCACATCA
GTTCAGATTTTTTAAAGGAGGTGAAGCCGTGGGCGGTAGCTTTCTCCTAG
AGATAGATGAAGGTTCTGTCGTTGACACTCTTGTCCATGACCACGTTGAG
ATGGGAAAGTTGCTTGTTGTTGCGAGACGATCAGCAAGGGTCTGAGATGA
AGCGGGGATCCAACTTCATCTCAGGGGGTACACAGAATAGACAATTCTAA
GAGGGTAGGGGTCTGAAGGGTAGTCTATACCTCCTGGGACCGACCCACAT
CCTGTCAACAATAAGATGTACCCTATTCATGCTAGCAGCCACACTCCTTA
ACATTTGTTGGTGCGGAGTCGGTTGTGGGTTGAGCCTACATGCGCCCCTT
TACCCTCAGATCGATGACCGAACTATGTTGGGTGTGCGTCCTCCCCATAA
CACAGCCAGTTCGTCGGCATCCTCCTCGTGGTGTCAGATCTGGTCGAGCG
ACGGGAGACGGCTGATCTACTTCTTCGATGCGAAGGCAGCGCCCGGTTCG
TCCACGGTCGACGACGGCGGCAACTTCACTCAGGCAAGGGGGAGGGGGCG
GCCTTCACTCCCCGTCGATCTTTGTTGAATTTTTTGCTGTTTATCACGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCGTGGTGACGGCAT
TGTTTGCGTGGTGGTGGTCGTGCTACTATCCTACTCCGATGAGTAAGATC
CATGATTATCCCTCCCCTGGTGTTTCATCGCGAACAACTGGTTGCCAGAT
TGTTACCGATAGTGCAAGAAAGGGCGAAAGGGAGATATAGAGTTGGAGAG
GAACAGAGAGCAAAGCATGGTGTGTCTCTTGACTGCATTAATAATGAACA
GCCGCCCGTGACCGTTTCTTTGCGGTGGGCCTACTGTAGACCGCATCGCC
TCAAGAAAACCTTAAAAATCCACAACGAGACCAGGGCATTCTTAGCTCAC
GCGAGGCTTTCGAGAGAGAACGCCACCCATACAGTGTGTTGGGGTGGTCG
TCCATATGCAGTACTGGAATGTAAGCCCATACTACGATGACGACAAACCG
CTCAACAGCAGATACGTGTGCATGACCAAAGTTGTCCACCTTGGAGAAAA
AAAACAGATAGGACAATCTAAACAGCTCTCCGGCTTGATGTGTGGGTCTG
AATCAAAAGCCCGTGGAGCGCAAACCTCTTCTTGCGCCCATACATACGTG
CCACATATTCTTGCCTCTCGTGCTCCGAACATCTGAAACCTGACCCAACG
AATGTTGCCCGTGTTCATTTCAATCAGGGCATTGCAATGGTCCCGAGAGG
GCGGAATTTTATCGTTGGCTGCAGCGACGGAGACGTGTTTGCGTTCCAAG
CTAAGGTACAGGATTTTAGAGGATGCTTACAATGCAGGGGATAATACTGC
GGGGGGGTCGGGGAGCGCAGTCGGTCAGTCCACCCCCACACGTTTGTTTG
TTTTTTCAAAGTTCCGAGCAAAGCCGAAGGTGCGCAACGGGCCGTATGTT
ATACCGTATTCTTCCCCTCGCAAGAGAAGATCTGGTCAGAGAACTGCTTC
AAAGTTGCACGGGCTAGCGAGGAGACCACAACTAATCAAGATTGTGCATG
GCCGTGTCTAGAAATGTTTTAAAGAAAACCATCCCTTTCATCGTTTTACC
GATATGTCTTGAAATTGTGCGTACTTTCTTCGTCGGTCGATTGCACGAGA
GGGCAGACCGGCCCCCAAGGGGAAGCGTGCGAGCTGACGGCTACTCTGAG
AGGGCACTGCCAACCGATCACGTGCGCGGCGGCCGACTCGGAGTGCTGCG
TCTCCGGAGACGCGTGAGTGCCTCACGCATCGCTAGCCCTAACCTTCCTC
TAGCCGTACATGCTGGACGCAGCCCTAACCTGATCCCTAGAAAAAAAAAA
CTGACCCAAGGGGAACGGTATCGATCAATATGTATCACGCTATCCCCTGC
AAGACTCTGGGGTGGTACATTGGGAAGGGGATGGGGGTCACAGTGCTGTG
GAGCAGCCAGGGACAGCGGTGCCTGCATCACCGCGATTCGTTTCTTCTTG
AATTGTGGACCCGTTAGGGAATTTGATCTCTGTCTTCCAATAGTTGTAGC
CTTGTGCTGTGTAGCCTTGTGCTGTTCGAGAGACGGAATTGAACTCTTCC
CTAGGATGACGGTCAACACCCGAGGAGCGGTTCCGATGTTGTCATCAAGA
GTAAATGGGTGAAAATGCTATACCAAGGGGACACTCGCTACTGCGGTTGT
TCTGCGTCGTCTCTTTTTGTTCAATGCTCTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCACCTCCACCTCCACCTCCTCCTCCTCCTCCTCTTCCCCCT
CCTCCTCCTTCCGCAGGGGGGGCACGGTCATTGTGTGGAGTATCGCCAAG
CACCTTGAACGGGAATGTTCCTTCGACGGCGACGGGTGAGATTATGGCAC
AGGCACTACGGTCAGAGTTAGGGATGGTACATCGTGTAGAGAATCGCATG
CAGATACTTGATACCGAAGGAGGGAAAGGATAACGCCGGTGTCACGCGGC
ACACGGGCACTGAAAAGACAGTAACCTGGGGTAGTTGATGCTGATGCCTT
CTTCACACTCAGCATGTATTTCTGGCCTTTGTCCAGTAGAGCGTCCCCTC
TTCCGTGTTCTTCAATCGACAGAACCGAATTCCCGACGGATCATGTATGC
CCGGGGGTTGTGCTTATAGTTCGCCACCATACATACCCCCGAAATCGCGC
CCTCTTGCCGCCCAGCACCCCCGCTACCGCCCTGTGTGCACGAGACGGCT
CAGTGGTGGCCTCGTACGCCACCGGACACCTGCGCGTTTTCGACACCCAC
AGAAAGTGAGGATCGACCGAAGCGGTGGGGGAAAGGGGGCAGTGCGGAGG
ACGTTCCCCGAAGCTATTGCACCCATCATGCGGTTGTAGGCTTCGTGCGT
CTCGTCGTTGCGTCGCCGTTGTTGATTATTCCGTGTTGGGTGCTGCGTTT
GTCTCGAAAAACATGTGCACGTTAGGGAGGGAGGGAGATTCCGCGACCCA
GCTGAGTTACGTGGGCATCAATCACAACACACGAAACGTCGAGGTCAAAA
GAGCTACAAGCAGCGCCCATTTTCCGATGGCAAAACGGCGATGGCCCTCC
ATTTCTGGACATACCTACTCCGCGGTACCAGAAACACAGCACATCTCGCC
GTTATTTCGATGTTGCCGGTGTCATGCTGTCGGTGGCGTCGTCTACACAC
CGCAACGGCGCGGTGGTGCCGTGGCGGGCGCCGGGGGCGAATTCTTATGT
CGCTTGCCAACTGTGATACGAGCGTTAACCAGCACCCGTCGCTCTCGAGA
ACGCTACCATTTACTACCCCTCCTCACCACATCTTGACGGCCTTGACGTT
TTGCTGTTCGTGCGGGCGGGCGCGGGGGGCGGCGGGGCTGCCAGAACACT
TGCGATCGAGATCGCAGCGCACAGCCGCACTATCAACGCGATGGACCTGC
ATCCCTCCAGCATGCTGGTGAGACCTGCTATTAGGGCGAGACGAAGGCAA
GGCATGGAGAGAAACGGTTGAAGCATTCGTGGGGGGACAATCGATACTTC
CCGGCAAGGAGAAACAATTGCCCGCGTCGGCAGCCTGATGTGTGTAGGAA
CGGTAACTTGTTTTGTGCGGTGCGAGCTCAGACCCCCTTTCAACCAATAT
AGCTGCCGCATCTGACCGGCTTACCGTCCGGATGAAGAGAAAGAGAGGAG
AAAGAGTCGTTCGTTGTCAACTCATCCCATTCTATCGTTGCCTGTTTATG
TAACGTTTATATCTCCCGCTCGTACGTCCTATCGCAGTTGGCTACGGTCG
GGGAAGACTTGTTTTTCAACGTGTGGGAGCTGCCCAAGTGCGGCCAGGAG
GGACCGTCAGGCCAGGCAAGAGAAAGCCCGTGCTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTGTGGGGTGTTGCGGCACGAAGTGTTCCTTCGCT
ACCGCGTGGTGGAAGATGCCGCCATCCTCGCGTGTGCATACACGCTTCGC
TGGCGAGTGTACCTGCGTTAGGAACGCTACACTGGGAGTTTGTCAAACGG
GGGTGCGGGGGGGGGGGGTGCgGGGGAGTGCCCCTCTTGCGGGCAAAAAA
AAGTCCTTCCGGCACGTGGTGTTGGGGATAGGGATGTGCCCTTGCTATCC
TTGCTGGCGGCGAGCGGAGCCCATGTGGATTCGGACACCAGGGGGAAACG
TAACGACTGTTTCTTGGATCTTATCGCTTGCTCCACGCCACCCCCCGAAA
GGGAGAGCACATCCGAAACCTCAAGTATTTCAGACATCGCTCAGGCCCTT
GGCACGCCCCTTTGACGCTAGCCGAGAGGGGGAGAGTACGGGGTGCGATG
TGCGCTCCGCGAATTCTTGAGCGATTGTTAGAAAGGGCAAGGTTAATACC
ATGCTTGGTGCGAATTGAAATGATTCTGGCGTGCGTTGCAGTGGCTCGAG
CGGACGGAAACTTCGTGGTATGTACGCCAACAACGACCGACCTCTCTTCG
TTGTGTGTACGATGCCGGCCAAATACTAGTGCCCTTTCCACATGGCCCAA
AAACAAATTGGGGAGCATGCGCGCGTCGCTGTTGTATCTTGATTTGCTAT
TATGTGCATAATTTCACCGTGTCGTGGCTGCGTCCCTACACGCGCACATG
AAATATCAAACATCATATCATCAGGTGGGATTAGTGGCTACGTCACGCGT
GGACAACCGCCTCTTGACCGGAGTGCAGTTCTTGGTGGACGGCAGCCATC
GAATCATCGGCCTCGCTTACGACTGTGACCACTTGCAGATTTGGCACAAG
CTTGGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1424383..1433091+

>mRNA_Ecto-sp6_S_contig9.18152.1 ID=mRNA_Ecto-sp6_S_contig9.18152.1|Name=mRNA_Ecto-sp6_S_contig9.18152.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1424383..1433091+ (Ectocarpus species6 EcLAC_371)
ATGGCTTGGGTCTCGGACGAAAGTAAGCCCCTCCCCCTCAAGCTCTCACC
TTCGCTGGGATTCAACAACCTGACGTCTAGCGTTTCCACCTTCGCCTACA
TTCACAAGGGCGATGTGCTCATCTACGGGCTTGACGGAGTGCTGAGGCAG
ACTCTGGTCAACGATGGTGGGGTACGGGCTATGGAGGTGCTCTTGTGCTC
GGGCGAAGACTTCGACTTCCTTGTGGTGGCCCTCAACACGGGGGTGCAGA
TCTGGTCGAGCGACGGGAGACGGCTGATCTACTTCTTCGATGCGAAGGCA
GCGCCCGGTTCGTCCACGGTCGACGACGGCGGCAACTTCACTCAGGCAAG
GGGGAGGGGGCGGCCTTCACTCCCCGGCATTGCAATGGTCCCGAGAGGGC
GGAATTTTATCGTTGGCTGCAGCGACGGAGACGTGTTTGCGTTCCAAGCT
AAGACCGGCCCCCAAGGGGAAGCGTGCGAGCTGACGGCTACTCTGAGAGG
GCACTGCCAACCGATCACGTGCGCGGCGGCCGACTCGGAGTGCTGCGTCT
CCGGAGACGCGGGGGGCACGGTCATTGTGTGGAGTATCGCCAAGCACCTT
GAACGGGAATGTTCCTTCGACGGCGACGGCACCCCCGCTACCGCCCTGTG
TGCACGAGACGGCTCAGTGGTGGCCTCGTACGCCACCGGACACCTGCGCG
TTTTCGACACCCACAGAAAAACACTTGCGATCGAGATCGCAGCGCACAGC
CGCACTATCAACGCGATGGACCTGCATCCCTCCAGCATGCTGTTGGCTAC
GGTCGGGGAAGACTTGTTTTTCAACGTGTGGGAGCTGCCCAAGTGCGGCC
AGGAGGGACCAAAGGGCAAGGTGGGATTAGTGGCTACGTCACGCGTGGAC
AACCGCCTCTTGACCGGAGTGCAGTTCTTGGTGGACGGCAGCCATCGAAT
CATCGGCCTCGCTTACGACTGTGACCACTTGCAGATTTGGCACAAGCTTG
GTTGA
back to top