mRNA_Ecto-sp6_S_contig9.18138.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18138.1
Unique NamemRNA_Ecto-sp6_S_contig9.18138.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE)

HSP 1 Score: 638 bits (1646), Expect = 4.440e-227
Identity = 342/401 (85.29%), Postives = 354/401 (88.28%), Query Frame = 2
Query:  137 SGTPPLPRRCPASHRPRRDPMTFH*PSSRPCVAVTWFPTATEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV 1339
            S TPPL R   A   P   P T   P  R   A           QRPRE+WLKSIVATIMVAVRFL+GPNGQR RQGCRGD XXXXX  APAQRATWRERAAAAARR LRSARNKIKN KDRLLAMFDISVA+RTARLLDLARKINVQDMPRRAGFRRQGSDELFEVD SRLGVS+ VAAAVKEICTKLAA FPVIGYNQGFDA+CKA+FICVGGNLG AAAVFTKWAVPLAWMMMNPYR GQLGINTAMRYTWSVIKMHA PVSGWL RDPIVGCDEDN+MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAG+HGPAVTIFVV+SLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTGY+AAMVGVPAC+  VEPV
Sbjct:   50 SPTPPLSRLPSAEENPPVLPPTIIPPLWRVEDAXXXX---XXXXQRPRESWLKSIVATIMVAVRFLVGPNGQRTRQGCRGDDXXXXXH-APAQRATWRERAAAAARRFLRSARNKIKNAKDRLLAMFDISVAKRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVEPV 446          
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE)

HSP 1 Score: 641 bits (1654), Expect = 5.950e-226
Identity = 332/361 (91.97%), Postives = 344/361 (95.29%), Query Frame = 2
Query:  254 ATEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEP 1336
            A EEQQRPRE+WLKSIVATIMVAVRFL+GPNGQRARQGCRGD XXXXX  APAQRATWRERAAAAARR LRSARNKIKN KDRLLAMFDISVA+RTARLLDLARKINVQDMPRRAGFRRQGSDELFEVD SRLGVS+ VAAAVKEICTKLAA FPVIGYNQGFDA+CKA+FICVGGNLG AAAVFTKWAVPLAWMMMNPYR GQLGINTAMRYTWSVIKMHA PVSGWL RDPIVGCDEDN+MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAG+HGPAVTIFVV+SLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTG +AAMVGVPAC+  VEP
Sbjct:   91 AAEEQQRPRESWLKSIVATIMVAVRFLVGPNGQRARQGCRGDDXXXXXH-APAQRATWRERAAAAARRFLRSARNKIKNAKDRLLAMFDISVAKRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGCRAAMVGVPACNDCVEP 450          
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5L0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z2_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 3.490e-103
Identity = 216/401 (53.87%), Postives = 228/401 (56.86%), Query Frame = 2
Query:  137 SGTPPLPRRCPASHRPRRDPMTFH*PSSRPCVAVTWFPTATEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV 1339
            S TPPL R   A   P   P T   P  R   A           QRPRENWLKSIVA IMVAVRFL+GPNGQRARQGCRGDXXXXXXXX               ARR LRSARNKIKN +DRL AMFDISVA+RTARLLDLARKI VQDMPRRAGFRRQGSDELFE+D SRLGVS+ VAAAVK+ICTKLAA FPVIGYNQ                                                                                                                   TMRAG+HGP VTIFV++SLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTGY+AAMVGVPAC+  VEPV
Sbjct:   33 SPTPPLSRLPSAEDDPPGFPPTIIPPLWRVEDAXXXX---XXXXQRPRENWLKSIVAAIMVAVRFLVGPNGQRARQGCRGDXXXXXXXXXXXXXXXXXXXXXXXARRFLRSARNKIKNAEDRLHAMFDISVAKRTARLLDLARKITVQDMPRRAGFRRQGSDELFEIDRSRLGVSDAVAAAVKDICTKLAAVFPVIGYNQ-------------------------------------------------------------------------------------------------------------------TMRAGIHGPTVTIFVIMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVEPV 315          
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: D7FR87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR87_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.130e-27
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  260 EEQQRPRE-NWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQ 736
            +EQQ+P E NW K + AT+M+A+R  + PN  RARQ  R D           + + W +RA A+AR+ L    + ++  K+R L +FD  +AR TARLL+L +++N +DMPR+ G RRQ S +LF  D  R    + +AA++K+IC  L A FP IGYNQ
Sbjct:  112 QEQQQPGETNWPKRLAATVMIAIRLFVRPNDVRARQESRDDENGHDHRHHEPRPSPW-DRARASARKLLDRPGDTLRQAKNRFLGLFDNPIAR-TARLLELVKRLNFRDMPRQPGSRRQSSGDLFIADRCRRRTCSAIAASIKKICATLVAEFPQIGYNQ 269          
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5K8H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.880e-19
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 2
Query: 1181 VVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV 1339
            VVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTGY+AAMVGVPAC+  VE V
Sbjct:    9 VVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVESV 61          
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: D8LM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM24_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.200e-8
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 2
Query:  884 MRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFME-PLSTFCSRLGLPQCVINDIVEETMRA 1093
            M YTWS IKMHA  VSGWL RDPIVGC+  ++MA T+L  + M+ PL    S +      + D+ E    A
Sbjct:   10 MGYTWSDIKMHAARVSGWLPRDPIVGCNTADEMAWTVLRGVMMKVPLMVTASTVRY----LKDLEERAPAA 76          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JQ60_9PHAE4.440e-22785.29Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K5C0_9PHAE5.950e-22691.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z2_9PHAE3.490e-10353.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR87_ECTSI1.130e-2743.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8H3_9PHAE3.880e-1986.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM24_ECTSI3.200e-846.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1286984..1292372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1342
Hectar predicted targeting categoryother localisation
Exons7
Cds size1029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18138.1prot_Ecto-sp6_S_contig9.18138.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1288326..1292372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350529.9708145-UTR-Ecto-sp6_S_contig9:1286983..12870661682350529.9708145-UTR-Ecto-sp6_S_contig9:1286983..1287066Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1286984..1287066 +
1682350529.982995-UTR-Ecto-sp6_S_contig9:1287818..12879651682350529.982995-UTR-Ecto-sp6_S_contig9:1287818..1287965Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1287819..1287965 +
1682350529.9923792-UTR-Ecto-sp6_S_contig9:1288242..12883251682350529.9923792-UTR-Ecto-sp6_S_contig9:1288242..1288325Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1288243..1288325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350530.0018516-CDS-Ecto-sp6_S_contig9:1288325..12887481682350530.0018516-CDS-Ecto-sp6_S_contig9:1288325..1288748Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1288326..1288748 +
1682350530.0113163-CDS-Ecto-sp6_S_contig9:1289082..12892261682350530.0113163-CDS-Ecto-sp6_S_contig9:1289082..1289226Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1289083..1289226 +
1682350530.0212123-CDS-Ecto-sp6_S_contig9:1289604..12897381682350530.0212123-CDS-Ecto-sp6_S_contig9:1289604..1289738Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1289605..1289738 +
1682350530.0307949-CDS-Ecto-sp6_S_contig9:1289992..12901581682350530.0307949-CDS-Ecto-sp6_S_contig9:1289992..1290158Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1289993..1290158 +
1682350530.0400422-CDS-Ecto-sp6_S_contig9:1292210..12923721682350530.0400422-CDS-Ecto-sp6_S_contig9:1292210..1292372Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1292211..1292372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18138.1

>prot_Ecto-sp6_S_contig9.18138.1 ID=prot_Ecto-sp6_S_contig9.18138.1|Name=mRNA_Ecto-sp6_S_contig9.18138.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=343bp
MVAVRFLIGPNGQRARQGCRGDDDDDDDNHAPAQRATWRERAAAAARRCL
RSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQ
GSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAV
FICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKM
HAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVI
NDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAA
ASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:1286984..1292372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18138.1 ID=mRNA_Ecto-sp6_S_contig9.18138.1|Name=mRNA_Ecto-sp6_S_contig9.18138.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5389bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1286984..1292372+ (Ectocarpus species6 EcLAC_371)
ATGATCATCATCGCGGCGTTGGCGGTAAGCGCCTTCTCCGTATCATCCCC AAGCCACGAGGTGCCCTCAAGTACCGCACCAGGGTGAGCCACACTGACTG GGGTTAGTCAGTCAAGTCGACCCGCCCGTCTCCAGTTCAAGCCTAGATTT CGCCGAATATGCACCTCTCGCGCGCATAGCTTGAGACGATTGTGATTCGT TGTCTTGGATGAATGTGGGATCGTTGCTCTTGGCAACCTTCGATGGTACC AGAAGGGTGCTTAGTCGAAACTGCCATTTGCACCATTCAAGACTACTACT GCTGATTGTAGCCCAATCAATGGCGAGGTCCATCAGGTCGGATTGATGTC AGAAAAGAAAAATGAGAACCGTCGTGAAACTATGCTGCATGTATTTCTCC GTTAGTACTTCGCTCCATATACTGTCGGTGCTCGCAGTATCCACCCTACG TGTGGCAGGAGCGCTCTTGTCCGGGGTCTCACACAGACGGTTCCTCTAAA GTTGCATGCCGTCAGGGCGTTAGGCCTACGAATCCCCTCCCCCTGGTCAA CTACAGCTTCAATTCGAAATAGGTGTACTTCACGAAGAAGCACTACTTAC GCGGCGTCCCGGCGACATTCGAACGCGAAACATTGTCTTCTCAGCGCTTG AGGGCACGCCAATAGACCAATAGACCACGCCAACGAGCCACGGCGGCAGT GCGAGTAGAACCACGTTCGTAGAGAGGGGCAAGTGGAAACCAGATCACAG CAACGCACAACCTTCTCGTGTATCCAACAACGAAATCAATACAATCTTGA TACCTCCACCAACGCGCCGCCCGTCGAACATACAGGCGCAATGACTCCTT CTTGGACACGGTCTTCCTGTTCGCGACCACGGTCAGTATCGGGGACCCCT CCCCTACCCCGCCGCTGTCCAGCCTCCCATCGGCCGAGGAGAGACCCGAT GACTTTCCACTGACCATCATCCCGCCCCTGTGGTGCGAGGAGGATGCGGC GGCAAGCTTGCCGCCGCATCCTCCTCGCACCACAGGGGCGGGATGATGGT CATGGGAAAGTCATCGGGTCTCTCCTCGGCCGATGGGAGGCTGGACAGCG GCGGGGTAGGGGAGGTGTCCCCGATACTGACCGTGGTCGCGAACAGGAAG ACCGTGTCCAAGAAGGAGTCATTGCGCCTGTATGTTCGACGGGCGGCACG TTGGTGGAGGTAACAAGATTGTATTGATTTCGTTGTTGGATACACGAGAA GGTTGTGAGTTGCTGTGACCTGGTTTCCTACTGCGACCGAAGAACAACAA CGGCCGCGCGAAAACTGGCTGAAGAGCATCGTCGCCACCATCATGGTGGC CGTTCGCTTCCTGATTGGCCCTAATGGCCAGAGGGCGAGGCAGGGATGCC GGGGCGACGACGACGACGACGACGACAACCACGCCCCCGCCCAACGCGCT ACGTGGCGAGAGCGAGCCGCAGCTGCCGCTCGTAGGTGTCTGCGCTCAGC GAGAAACAAGATCAAAAACACCAAGGACCGCCTCCTCGCCATGTTCGACA TCTCCGTCGCCAGGAGAACCGCTCGACTGTTGGACCTGGCGCGCAAGATC AACGTGCAGGACATGCCGCGCCGGGCGGGGTTCAGACGCCAAGGCAGCGA CGAGCTCTTTGAGGTCGATAGTAGCCGCCTGGGAGTGAGCAATACCGTCG CCGCCGCTGTGAAGGAGATTTGCACCAAGTTGGCGGCGGCATTCCCTGTC ATCGGATACAACCAGGTGAGGACATGGCGAGGCCGCGGGGTGCCGTAGTA CTTGTGTGACCTCGATCCTTACCCGCCGACCGTTGGCGCGAGATGGCTGT CCGAGTGGCTGCGGGATTGGTTGCTTGCGGTTGGACATATCTGTGACACA AGAGGATATTGTTGCCCGATCGGTGCTCTCTGTTGCTTGGTGGATTTCCA AAGCGTTCAATTTCTCTGCCCGCTGCTACCCTGTCCTAGAACTGCTCCAT GTTGCAGTGTATCTGCCGCAGAGCCATTATTTATTGGCTTGTTCGTTCAC CTGATCTTGGCCGTACCCACACCGCCCCCGCCTTAACACCGCGCCCCAGG GCTTCGACGCCGCCTGTAAGGCGGTCTTTATCTGTGTGGGCGGAAACCTG GGTGCGGCCGCCGCAGTTTTCACCAAGTGGGCCGTTCCCTTGGCGTGGAT GATGATGAACCCATACAGGGACGGCCAGCTCGGCATCAACACTGTGAGCA TCAGCAGACTGCTGCTGCGTGATATGTGCCATGGACGTATCGTGCTGACG TAGGGGTGGAACGTGTGTACACGTCAGAAATGAGCGGGGATGCTTTCAGC CGACGGAAGGAGAGAGACGACGGCTGAACCCACCTTGATTCTGATGATAA ATATACGATTAACATAGTCAACAATGAAAAACGGAACACACAACGGCATG TACCGCCAGCGATGGGTGTTCTTTAGCCGCATCGTCAGCGAAATGTCATG AGGTAAGGTTTACCTGTGGATGAACGGCCGATGTGCCTCCCGTACATGAC CGCCTGACACTACGACGGCAAAATGCGTTCGTACTACTTCTGGTTTACGT CTTGCCACTGTTTTTGAGCAGGCCATGCGATACACCTGGTCGGTGATCAA AATGCACGCCGGTCCGGTGTCCGGATGGCTGTCACGCGACCCGATCGTTG GCTGCGACGAGGACAACGACATGGCCGACACGATTCTCGCACACATCTTC ATGGAGTGAGCCCACGCTTGTATGGTGTACATGTAGGTTGACATATCTGC TTGGTTTCGGAAGCAATGGCCGAGCTCAGTACGGATGTATCATATTTTTG GACAAGATGGTGCCGTAGTTGTCACCATGCATGCATGCGACGACCGAACA CGTGTCCATCTCCACTTGCCTCTCCCTGTGCTCGATTCTCTGTATTTACG CTGGCACCCCTCGCCGCACTTGTCCAATGTTCCTCTTCTTCTCCTGTCGC TGCTGCCAGGCCGCTCTCGACCTTCTGCTCAAGGCTGGGCCTCCCCCAGT GTGTCATCAACGACATCGTGGAGGAGACGATGCGGGCTGGCCTTCATGGC CCGGCTGTCACGATATTCGTTGTTGTGTCTCTTCTCTGCTTGGCGGAGAA GCAGGGGGCGGAGGACGCCGACGTGGTAAGCGAAGGCCGTTGCAGTAGGA GTAGATTGCCATTGATGGCGGCGTCTCACCGGTACCTGTTCCAGTTACCG TCATCGTGTCTTTACCGCCCCCCTTCCCCCGCTGTCGACGTACTGCTTCT TCCTGGACGTTAAAAAGGCATACGATACCGTATGGAGAAATAGGCTGTGG AAACATTTGTCCAGGTACAGGATCAAGGGGAAAATATGGAGAGTGCTGTG AAGAAGATGACAAAGCGTACAAAAAGCGCGGTCATGCTAGACGGAGAGCT GTCTAAGTTCTTCGACATGGAGCGGAGGGTTCCACAAGGTTGCACGCCGT CCCCAACATTGCTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG GCAGTCCGGAAGGAAGTAAAAGTAGGGCACACGGAAACTTCGGTGTCAGG AATGCTGTTTGCGGATGATTTTGTTGGTATGTCGGACACCGCTGAGGGAC TGCAACTGCAAATAGACGCGGCGAAGAAATTTCCTGAAAAGTGGAGATTG TCTGCCAACGTTACGAAGAGTGCCGTCATGGTATGCAACGAGGTCAAGGA GAAACCAGTAGAACATAGATGGACGTGGGGGATCGGGGAGATTGCAGTAG TGGACCAGTACACGTACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGG AATGCACACATGTCCAAGGTAGCGGAAAACGGCAAAGCACGAGCAGCGAA GCTGCACCCAATACTCGCATTCCGGCATCTCGATACACGCATGAAATTGA CGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTA TGGGAAGGAAATAAGAAGGTAGTGAGAGAACTCGAGGTGGCGCAGATGAA AGCAGTGAAAATCATCCTCGGATGCTCCAAGCGCACAAGTAATGCAGCAG TCAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCAAGG AAGCTGACACGGCGGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCC GAGAATAGTATGGGAGGCGAAGTGGACAAACAAAAAGAGGGGTAGACAAC CCACGGAATGGGTCAAGGTTGTGGAGGACGTATGGAAGGGGTTCGACATC GACGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGA GACGATATCTGTTGCTTGTGCCGAAAGAGAAGAACATAATCTAAGGAAAG AAACCGAGGATAAGGAGGGTCCAGAAGTGTACGGAATGTTGCAAGAAGGA ATAGGGTTCAAGGACTACCTGCATGGACCAATGGATGCAGGGACAAAGAA GATCAAATTCAGGACCGGGAACATAGGCCTTCGAGAACGTCGACGAAGAC ATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGATTGCGGCTTC GAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCGTCTGTACAATAA GGAGAGGGAAGTGTACATGACTGAGCGGGGAACATACAACGAGATGTTTG AGGCATGGAATAGAGAGGAGAAGACGGTAGCTGTACTGGGAAGTAGGAAG TGGTTTGAAAAGGCGGGAAGGGATATCGTTAGGATTGCTGGACTAGGGAC AACATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCG GTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTC AATGGTCTAACCGCTAAGGCATGCAAAACATAAGAGTACGCCCCCCCTCC CCGGCTGATCCTGTACCTTGCCACCCACCACTTGATATTTTATTCTTCCA TCTTGAGACGAAAACTGAACAAGAAGGATGCAACCTCGACGCTCCTCCCC CTCGTCGCCCTCTCCCTTGCTTTTTTGGTTGTTTACGACGAGAACAGAAG CTGGCTGTGTTCCAAAGTACGCATTTCATACATGGTTCATCATGACAATA CTATGCGTACGTGACCGCTTTTCGTAACACAAGCACTTGCGGCTGTACTT CACTGGTCTGGTGTCCCATCATTGCAGGTGGTGATGGTGAAGGTCCCTCT AATGGCCGCAGCAAGCAGCGTGAAGTCCTTCAAGGACATCTTGGAGCACG TCCCGGTGTCGCTCGAGCACTTCTTGACTGGGTACCAAGCCGCAATGGTC GGAGTACCGGCGTGCGATGGCTGGGTAGAGCCGGTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1286984..1292372+

>mRNA_Ecto-sp6_S_contig9.18138.1 ID=mRNA_Ecto-sp6_S_contig9.18138.1|Name=mRNA_Ecto-sp6_S_contig9.18138.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1286984..1292372+ (Ectocarpus species6 EcLAC_371)
ATGGTGGCCGTTCGCTTCCTGATTGGCCCTAATGGCCAGAGGGCGAGGCA
GGGATGCCGGGGCGACGACGACGACGACGACGACAACCACGCCCCCGCCC
AACGCGCTACGTGGCGAGAGCGAGCCGCAGCTGCCGCTCGTAGGTGTCTG
CGCTCAGCGAGAAACAAGATCAAAAACACCAAGGACCGCCTCCTCGCCAT
GTTCGACATCTCCGTCGCCAGGAGAACCGCTCGACTGTTGGACCTGGCGC
GCAAGATCAACGTGCAGGACATGCCGCGCCGGGCGGGGTTCAGACGCCAA
GGCAGCGACGAGCTCTTTGAGGTCGATAGTAGCCGCCTGGGAGTGAGCAA
TACCGTCGCCGCCGCTGTGAAGGAGATTTGCACCAAGTTGGCGGCGGCAT
TCCCTGTCATCGGATACAACCAGGGCTTCGACGCCGCCTGTAAGGCGGTC
TTTATCTGTGTGGGCGGAAACCTGGGTGCGGCCGCCGCAGTTTTCACCAA
GTGGGCCGTTCCCTTGGCGTGGATGATGATGAACCCATACAGGGACGGCC
AGCTCGGCATCAACACTGCCATGCGATACACCTGGTCGGTGATCAAAATG
CACGCCGGTCCGGTGTCCGGATGGCTGTCACGCGACCCGATCGTTGGCTG
CGACGAGGACAACGACATGGCCGACACGATTCTCGCACACATCTTCATGG
AGCCGCTCTCGACCTTCTGCTCAAGGCTGGGCCTCCCCCAGTGTGTCATC
AACGACATCGTGGAGGAGACGATGCGGGCTGGCCTTCATGGCCCGGCTGT
CACGATATTCGTTGTTGTGTCTCTTCTCTGCTTGGCGGAGAAGCAGGGGG
CGGAGGACGCCGACGTGGTGGTGATGGTGAAGGTCCCTCTAATGGCCGCA
GCAAGCAGCGTGAAGTCCTTCAAGGACATCTTGGAGCACGTCCCGGTGTC
GCTCGAGCACTTCTTGACTGGGTACCAAGCCGCAATGGTCGGAGTACCGG
CGTGCGATGGCTGGGTAGAGCCGGTGTAG
back to top