mRNA_Ecto-sp6_S_contig9.18138.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE) HSP 1 Score: 638 bits (1646), Expect = 4.440e-227 Identity = 342/401 (85.29%), Postives = 354/401 (88.28%), Query Frame = 2
Query: 137 SGTPPLPRRCPASHRPRRDPMTFH*PSSRPCVAVTWFPTATEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV 1339
S TPPL R A P P T P R A QRPRE+WLKSIVATIMVAVRFL+GPNGQR RQGCRGD XXXXX APAQRATWRERAAAAARR LRSARNKIKN KDRLLAMFDISVA+RTARLLDLARKINVQDMPRRAGFRRQGSDELFEVD SRLGVS+ VAAAVKEICTKLAA FPVIGYNQGFDA+CKA+FICVGGNLG AAAVFTKWAVPLAWMMMNPYR GQLGINTAMRYTWSVIKMHA PVSGWL RDPIVGCDEDN+MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAG+HGPAVTIFVV+SLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTGY+AAMVGVPAC+ VEPV
Sbjct: 50 SPTPPLSRLPSAEENPPVLPPTIIPPLWRVEDAXXXX---XXXXQRPRESWLKSIVATIMVAVRFLVGPNGQRTRQGCRGDDXXXXXH-APAQRATWRERAAAAARRFLRSARNKIKNAKDRLLAMFDISVAKRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVEPV 446
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE) HSP 1 Score: 641 bits (1654), Expect = 5.950e-226 Identity = 332/361 (91.97%), Postives = 344/361 (95.29%), Query Frame = 2
Query: 254 ATEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEP 1336
A EEQQRPRE+WLKSIVATIMVAVRFL+GPNGQRARQGCRGD XXXXX APAQRATWRERAAAAARR LRSARNKIKN KDRLLAMFDISVA+RTARLLDLARKINVQDMPRRAGFRRQGSDELFEVD SRLGVS+ VAAAVKEICTKLAA FPVIGYNQGFDA+CKA+FICVGGNLG AAAVFTKWAVPLAWMMMNPYR GQLGINTAMRYTWSVIKMHA PVSGWL RDPIVGCDEDN+MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAG+HGPAVTIFVV+SLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTG +AAMVGVPAC+ VEP
Sbjct: 91 AAEEQQRPRESWLKSIVATIMVAVRFLVGPNGQRARQGCRGDDXXXXXH-APAQRATWRERAAAAARRFLRSARNKIKNAKDRLLAMFDISVAKRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGCRAAMVGVPACNDCVEP 450
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5L0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z2_9PHAE) HSP 1 Score: 318 bits (816), Expect = 3.490e-103 Identity = 216/401 (53.87%), Postives = 228/401 (56.86%), Query Frame = 2
Query: 137 SGTPPLPRRCPASHRPRRDPMTFH*PSSRPCVAVTWFPTATEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVVSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV 1339
S TPPL R A P P T P R A QRPRENWLKSIVA IMVAVRFL+GPNGQRARQGCRGDXXXXXXXX ARR LRSARNKIKN +DRL AMFDISVA+RTARLLDLARKI VQDMPRRAGFRRQGSDELFE+D SRLGVS+ VAAAVK+ICTKLAA FPVIGYNQ TMRAG+HGP VTIFV++SLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTGY+AAMVGVPAC+ VEPV
Sbjct: 33 SPTPPLSRLPSAEDDPPGFPPTIIPPLWRVEDAXXXX---XXXXQRPRENWLKSIVAAIMVAVRFLVGPNGQRARQGCRGDXXXXXXXXXXXXXXXXXXXXXXXARRFLRSARNKIKNAEDRLHAMFDISVAKRTARLLDLARKITVQDMPRRAGFRRQGSDELFEIDRSRLGVSDAVAAAVKDICTKLAAVFPVIGYNQ-------------------------------------------------------------------------------------------------------------------TMRAGIHGPTVTIFVIMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVEPV 315
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: D7FR87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR87_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.130e-27 Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query: 260 EEQQRPRE-NWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRCLRSARNKIKNTKDRLLAMFDISVARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQ 736
+EQQ+P E NW K + AT+M+A+R + PN RARQ R D + + W +RA A+AR+ L + ++ K+R L +FD +AR TARLL+L +++N +DMPR+ G RRQ S +LF D R + +AA++K+IC L A FP IGYNQ
Sbjct: 112 QEQQQPGETNWPKRLAATVMIAIRLFVRPNDVRARQESRDDENGHDHRHHEPRPSPW-DRARASARKLLDRPGDTLRQAKNRFLGLFDNPIAR-TARLLELVKRLNFRDMPRQPGSRRQSSGDLFIADRCRRRTCSAIAASIKKICATLVAEFPQIGYNQ 269
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: A0A6H5K8H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H3_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 3.880e-19 Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 2
Query: 1181 VVMVKVPLMAAASSVKSFKDILEHVPVSLEHFLTGYQAAMVGVPACDGWVEPV 1339
VVMVKVPLMAAASSVKSF+DILEH PVSLEHFLTGY+AAMVGVPAC+ VE V
Sbjct: 9 VVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVESV 61
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Match: D8LM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM24_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 3.200e-8 Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 2
Query: 884 MRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFME-PLSTFCSRLGLPQCVINDIVEETMRA 1093
M YTWS IKMHA VSGWL RDPIVGC+ ++MA T+L + M+ PL S + + D+ E A
Sbjct: 10 MGYTWSDIKMHAARVSGWLPRDPIVGCNTADEMAWTVLRGVMMKVPLMVTASTVRY----LKDLEERAPAA 76 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18138.1 >prot_Ecto-sp6_S_contig9.18138.1 ID=prot_Ecto-sp6_S_contig9.18138.1|Name=mRNA_Ecto-sp6_S_contig9.18138.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=343bp MVAVRFLIGPNGQRARQGCRGDDDDDDDNHAPAQRATWRERAAAAARRCLback to top mRNA from alignment at Ecto-sp6_S_contig9:1286984..1292372+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18138.1 ID=mRNA_Ecto-sp6_S_contig9.18138.1|Name=mRNA_Ecto-sp6_S_contig9.18138.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5389bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1286984..1292372+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1286984..1292372+ >mRNA_Ecto-sp6_S_contig9.18138.1 ID=mRNA_Ecto-sp6_S_contig9.18138.1|Name=mRNA_Ecto-sp6_S_contig9.18138.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1286984..1292372+ (Ectocarpus species6 EcLAC_371)back to top |